MS009669 (gene) Bitter gourd (TR) v1

Overview


Name	MS009669
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pre-mRNA-processing protein 40C
Location	scaffold813: 3123007 .. 3124893 (+)
RNA-Seq Expression	MS009669
Synteny	MS009669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGTACGCCTAAAAATACGGAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCTCAGGTATATCTTTTGGGCCATGATTATGGGGTTAGTTTTGGGAAAATGAAACAAGAAAAGAGAGAAGGTAATGGATTAAGAAATATGGAGCCTGGTATGTCTATCAGTCTAGTGTAATAGGGTTTGACCTTTTGCTGGTGAATTTAAAAGCATAATCAATTAAATATTTCACTTAAAATTGTCTGACATGAAATAAACCGTAAGCTGTTGGATCATTTGTTTTTCAATTAAACGGCATCTGATCATTCCCCTACTAATGAGCAATAGTCAAACGCATTCTAGTTTGGTTGATCCTTCAGTGTCAACTATGTCACGCTTTTTTTTGGTGTGCTTAGGCCTCTTGGACTGAGTCAAAAATTAAATTGGAGAAGGATCCACAAGGGCGTGCATCTAATCCTGATTTAGATCCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGGTAATTCTATGACTCACTGATCTTAGACTTTTCGTCCGTTTCACTACCATTTGCAGATCAATGTGCAATATTATTTTACAAGATGTGTATGATTTCTCTACAGTTTACTTTTCCAGGTTTCTTTTTCTCTTTTCTTGTTTTCTTTTAATAACTGGGAGTCGGAGCTTTGCTCCCCATACCTCGGGGCACCGGCGCCCATCCCAAGGCCCCCCGACCGTAGGAGACATCAAGGGTTTTTTTGTATTAAACTCACCGAAGATCCGAACTTGAAATCTCTAGGTCGATATGACCAAGAGACCCCAGGTCCCAAGTCCTTGCTAACAGGCCGCCTTTGGGGCTTTCCTGTTTTTCTTTATACTGGTTTTTACTGCATCTATTGCAGTTAATTTGAATTTTGAGCTAGTATTACATCAAGTCATGAAGTTTTTATAGATGCCTTTCTGAGCTTCTGATATAAAGGGAGGCAATCTTGAGTTTTGATCTCATTCCTTCGATTCTCTTCCCGTATCTCTACCTCTATGTTCTCTCTCTTCTAGGATTCAAATTTTATGAAAACTTATTTTCTTATCTTATTGTGCTGTTCAGCAGATGCTTGTAATAATACGTCCAAGCTCAATAAAATTTGGGATCATGTTTATGAATCTGTTCGTTTTATTCAGTGATGCCTAAGCCTAAAAGCTCTTAGATTGGAAATAGTTGTGCGTTCTAAATTTCTATTTCTTGTGGAAGAATCACCTGCGTGAGATGTTGATTGTTTCACTAATTTTCAAACCAAGTGGTATAAGACTAGGTCGTATACACTTTTAAGTATATAGCAAATGAACTTCGAAGAATTGGGGGAACAGTTGTGTAAATCGTTATACTGTCTGAATAATTGCTTTCCAGATATTTAACATGACATGAAAGTTGTTCTCTTAATGTAGGTTGGTGACTCATGAGTGTCCATTCACTGCACTACAACTGGAGTGAATGTTTATTGCTATTAAGAGAACGCCATCGCATTATGTCTCACTCGATTTCTTTTCCGTTTGAATTTCTGCAGCGTTGTGCTAATGAGTTCAGAACTCTATTGTCTGACGCCTTTACAGCCGAGGCAGTAGCACATGTATCAGAAGATGGAAAGACAGTTCTTAACTCTTGGACGATGGCTAAACGAATTCTGAAGCCTGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGTGTTGTGGCGTCGATATGCTGACGATACGTTGCGGAAGCAAAAGTTGGTAAATGATCAGAAGGGAGAAAAACATGGCTCAAAGAGTAGAGCAACCACTGACGCTGGAAAATTTCCTTCGAAACCAAGAATCCAAGAG

mRNA sequence

ATGGAAAGGGTACGCCTAAAAATACGGAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCTCAGGCCTCTTGGACTGAGTCAAAAATTAAATTGGAGAAGGATCCACAAGGGCGTGCATCTAATCCTGATTTAGATCCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGTTGTGCTAATGAGTTCAGAACTCTATTGTCTGACGCCTTTACAGCCGAGGCAGTAGCACATGTATCAGAAGATGGAAAGACAGTTCTTAACTCTTGGACGATGGCTAAACGAATTCTGAAGCCTGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGTGTTGTGGCGTCGATATGCTGACGATACGTTGCGGAAGCAAAAGTTGGTAAATGATCAGAAGGGAGAAAAACATGGCTCAAAGAGTAGAGCAACCACTGACGCTGGAAAATTTCCTTCGAAACCAAGAATCCAAGAG

Coding sequence (CDS)

ATGGAAAGGGTACGCCTAAAAATACGGAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCTCAGGCCTCTTGGACTGAGTCAAAAATTAAATTGGAGAAGGATCCACAAGGGCGTGCATCTAATCCTGATTTAGATCCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGTTGTGCTAATGAGTTCAGAACTCTATTGTCTGACGCCTTTACAGCCGAGGCAGTAGCACATGTATCAGAAGATGGAAAGACAGTTCTTAACTCTTGGACGATGGCTAAACGAATTCTGAAGCCTGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGTGTTGTGGCGTCGATATGCTGACGATACGTTGCGGAAGCAAAAGTTGGTAAATGATCAGAAGGGAGAAAAACATGGCTCAAAGAGTAGAGCAACCACTGACGCTGGAAAATTTCCTTCGAAACCAAGAATCCAAGAG

Protein sequence

MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE

Homology

[Close]

BLAST of MS009669 vs. NCBI nr
Match: XP_022146153.1 (pre-mRNA-processing protein 40C [Momordica charantia])

HSP 1 Score: 334.3 bits (856), Expect = 6.0e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL
Sbjct: 675 MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 734

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP
Sbjct: 735 FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 794

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE 172
           RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
Sbjct: 795 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE 845

[Close]

BLAST of MS009669 vs. NCBI nr
Match: XP_038900162.1 (pre-mRNA-processing protein 40C [Benincasa hispida])

HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79
Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD SDTEKL
Sbjct: 668 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 727

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFRTLLS+AFTAE VA +SEDGKTVLNSWTMAKRILKPDPRYSKVP
Sbjct: 728 FREHVKMLQERCANEFRTLLSEAFTAEVVAQLSEDGKTVLNSWTMAKRILKPDPRYSKVP 787

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDTLRKQKL ND KGEKH   KSRAT DAGKFPSKPRI E
Sbjct: 788 RKEREALWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPRIHE 839

[Close]

BLAST of MS009669 vs. NCBI nr
Match: XP_008462197.1 (PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo] >KAA0059331.1 pre-mRNA-processing protein 40C [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.4e-76
Identity = 151/172 (87.79%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKL
Sbjct: 675 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKL 734

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL+SWTMAKRILKPDPRY KVP
Sbjct: 735 FREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVP 794

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Sbjct: 795 RKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 846

[Close]

BLAST of MS009669 vs. NCBI nr
Match: XP_011659583.1 (pre-mRNA-processing protein 40C [Cucumis sativus] >KGN45409.1 hypothetical protein Csa_016573 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 9.0e-76
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASN DLD S+TEKL
Sbjct: 674 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKL 733

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR LLS++FTAE VA VSEDGKTVLNSWTMAKRILKPDPRY KVP
Sbjct: 734 FREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVP 793

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Sbjct: 794 RKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 845

[Close]

BLAST of MS009669 vs. NCBI nr
Match: XP_023547625.1 (pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo] >XP_023547626.1 pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 150/172 (87.21%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASW+ESK+KLEKDPQGRASNPDLD SDTEKL
Sbjct: 670 MERVRLKVRKKEAVASFQALLVESIKDPQASWSESKVKLEKDPQGRASNPDLDSSDTEKL 729

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFRTLLS+AFTAE V+ VSEDGKTVLNSWTMAKR LKPDPRYSK+P
Sbjct: 730 FREHVKMLQERCANEFRTLLSEAFTAEVVSQVSEDGKTVLNSWTMAKRTLKPDPRYSKLP 789

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDTLRKQK  ND K EKH  SKSR+T  AGK PSKPRI E
Sbjct: 790 RKEREALWRRYADDTLRKQKSANDHKVEKHSNSKSRSTNVAGKLPSKPRIHE 841

[Close]

BLAST of MS009669 vs. ExPASy Swiss-Prot
Match: Q9LT25 (Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana OX=3702 GN=PRP40C PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-47
Identity = 94/154 (61.04%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           +ERVR KIR+KEA +S+QALLVE I+DP+ASWTESK  LE+DPQ RASNPDL+P+D EKL
Sbjct: 682 VERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPILERDPQKRASNPDLEPADKEKL 741

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FR+HVK L ERC ++F+ LL++A ++EA    +EDGKT LNSW+ AK++LKPD RYSK+P
Sbjct: 742 FRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYSKMP 801

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS 155
           R++REV+WRRY +D  RKQ+  N Q+ ++   K+
Sbjct: 802 RQDREVVWRRYVEDISRKQRHENYQEEKQRDYKT 835

[Close]

BLAST of MS009669 vs. ExPASy Swiss-Prot
Match: O14776 (Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +   S   L+  + EKL
Sbjct: 887 IDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWE-SGSLLEREEKEKL 946

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           F EH++ L ++    FR LL +               T+ ++W   K+I+K DPR  K  
Sbjct: 947 FNEHIEALTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFS 999

Query: 121 RKERE 126
             +R+
Sbjct: 1007 SSDRK 999

[Close]

BLAST of MS009669 vs. ExPASy Swiss-Prot
Match: Q8CGF7 (Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 1    MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
            ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +   S   L+  + EKL
Sbjct: 889  IDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWE-SGSLLEREEKEKL 948

Query: 61   FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
            F EH++ L ++    FR LL +               T+ ++W   K+I+K DPR  K  
Sbjct: 949  FNEHIEALTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFS 1001

Query: 121  RKERE 126
              +R+
Sbjct: 1009 SSDRK 1001

[Close]

BLAST of MS009669 vs. ExPASy TrEMBL
Match: A0A6J1CXT9 (pre-mRNA-processing protein 40C OS=Momordica charantia OX=3673 GN=LOC111015435 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.9e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL
Sbjct: 675 MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 734

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP
Sbjct: 735 FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 794

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE 172
           RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
Sbjct: 795 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE 845

[Close]

BLAST of MS009669 vs. ExPASy TrEMBL
Match: A0A5A7V0S2 (Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00550 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 151/172 (87.79%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKL
Sbjct: 675 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKL 734

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL+SWTMAKRILKPDPRY KVP
Sbjct: 735 FREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVP 794

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Sbjct: 795 RKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 846

[Close]

BLAST of MS009669 vs. ExPASy TrEMBL
Match: A0A1S3CHX0 (pre-mRNA-processing protein 40C OS=Cucumis melo OX=3656 GN=LOC103500614 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 151/172 (87.79%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKL
Sbjct: 675 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKL 734

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL+SWTMAKRILKPDPRY KVP
Sbjct: 735 FREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVP 794

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Sbjct: 795 RKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 846

[Close]

BLAST of MS009669 vs. ExPASy TrEMBL
Match: A0A0A0K978 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447710 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.4e-76
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASN DLD S+TEKL
Sbjct: 674 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKL 733

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR LLS++FTAE VA VSEDGKTVLNSWTMAKRILKPDPRY KVP
Sbjct: 734 FREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVP 793

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Sbjct: 794 RKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 845

[Close]

BLAST of MS009669 vs. ExPASy TrEMBL
Match: A0A6J1GNF1 (pre-mRNA-processing protein 40C OS=Cucurbita moschata OX=3662 GN=LOC111456014 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 150/172 (87.21%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           MERVRLK+RKKEAVASFQALLVESIKDPQASW+ESK+KLEKDPQGRASNPDLD SDTEKL
Sbjct: 670 MERVRLKVRKKEAVASFQALLVESIKDPQASWSESKVKLEKDPQGRASNPDLDSSDTEKL 729

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFRTLLS+AFTAE V+ VSEDGKTVLNSWTMAKR LKPDPRYSK+P
Sbjct: 730 FREHVKMLQERCANEFRTLLSEAFTAEVVSQVSEDGKTVLNSWTMAKRTLKPDPRYSKLP 789

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE 172
           RKERE LWRRYADDTLRKQK  ND K EKH  SKSR+T  AGK PSKPRI E
Sbjct: 790 RKEREALWRRYADDTLRKQKSANDDKVEKHSNSKSRSTNVAGKLPSKPRIHE 841

[Close]

BLAST of MS009669 vs. TAIR 10
Match: AT3G19840.1 (pre-mRNA-processing protein 40C )

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-48
Identity = 94/154 (61.04%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 1   MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKL 60
           +ERVR KIR+KEA +S+QALLVE I+DP+ASWTESK  LE+DPQ RASNPDL+P+D EKL
Sbjct: 682 VERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPILERDPQKRASNPDLEPADKEKL 741

Query: 61  FREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FR+HVK L ERC ++F+ LL++A ++EA    +EDGKT LNSW+ AK++LKPD RYSK+P
Sbjct: 742 FRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYSKMP 801

Query: 121 RKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS 155
           R++REV+WRRY +D  RKQ+  N Q+ ++   K+
Sbjct: 802 RQDREVVWRRYVEDISRKQRHENYQEEKQRDYKT 835

The following BLAST results are available for this feature:

BLAST of MS009669 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146153.1	6.0e-88	100.00	pre-mRNA-processing protein 40C [Momordica charantia]	[more]
XP_038900162.1	3.0e-79	91.28	pre-mRNA-processing protein 40C [Benincasa hispida]	[more]
XP_008462197.1	1.4e-76	87.79	PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo] >KAA0059331.1 pre-mRNA...	[more]
XP_011659583.1	9.0e-76	87.21	pre-mRNA-processing protein 40C [Cucumis sativus] >KGN45409.1 hypothetical prote...	[more]
XP_023547625.1	1.3e-74	87.21	pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo] >XP_023547626.1 pre...	[more]

BLAST of MS009669 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT25	1.8e-47	61.04	Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana OX=3702 GN=PRP40C PE=1 S...	[more]
O14776	6.4e-08	28.80	Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2	[more]
Q8CGF7	6.4e-08	28.80	Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=...	[more]

BLAST of MS009669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXT9	2.9e-88	100.00	pre-mRNA-processing protein 40C OS=Momordica charantia OX=3673 GN=LOC111015435 P...	[more]
A0A5A7V0S2	6.7e-77	87.79	Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3CHX0	6.7e-77	87.79	pre-mRNA-processing protein 40C OS=Cucumis melo OX=3656 GN=LOC103500614 PE=4 SV=...	[more]
A0A0A0K978	4.4e-76	87.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447710 PE=4 SV=1	[more]
A0A6J1GNF1	6.3e-75	87.21	pre-mRNA-processing protein 40C OS=Cucurbita moschata OX=3662 GN=LOC111456014 PE...	[more]

BLAST of MS009669 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19840.1	1.3e-48	61.04	pre-mRNA-processing protein 40C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002713	FF domain	SMART	SM00441	FF_2	coord: 10..67 e-value: 0.0027 score: 27.0
IPR002713	FF domain	PFAM	PF01846	FF	coord: 12..64 e-value: 3.4E-5 score: 24.0
IPR002713	FF domain	PROSITE	PS51676	FF	coord: 10..67 score: 8.915093
IPR036517	FF domain superfamily	GENE3D	1.10.10.440	FF domain	coord: 68..134 e-value: 9.7E-15 score: 56.4 coord: 7..67 e-value: 1.6E-20 score: 74.9
IPR036517	FF domain superfamily	SUPERFAMILY	81698	FF domain	coord: 63..140
IPR036517	FF domain superfamily	SUPERFAMILY	81698	FF domain	coord: 3..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..156
None	No IPR available	PANTHER	PTHR15377:SF3	TRANSCRIPTION ELONGATION REGULATOR HOMOLOG	coord: 1..166
IPR045148	Transcription elongation regulator 1-like	PANTHER	PTHR15377	TRANSCRIPTION ELONGATION REGULATOR 1	coord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009669.1	MS009669.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0070063	RNA polymerase binding
molecular_function	GO:0003712	transcription coregulator activity