MS009648 (gene) Bitter gourd (TR) v1

Overview


Name	MS009648
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit epsilon, mitochondrial
Location	scaffold813: 2985268 .. 2985483 (+)
RNA-Seq Expression	MS009648
Synteny	MS009648

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGAACGCAGCGGTGCCCTTTTGGAGAGCGGCGGGGATGACATACATCACGTACTCAAACATATGCGCCAATCTGGTCAGGAACTGTCTCAAGGAGCCTTACAAGGCCGAAGTTCTCAGCCGCGAGAAGGTTCACTTTTCAATTTCCAAGTGGGCGGACGGCAAGCCCCAGAAGCCCAGTATGTTCTCTCTCTCGCTCCTATTTAGAATT

mRNA sequence

ATGGCTTCGAACGCAGCGGTGCCCTTTTGGAGAGCGGCGGGGATGACATACATCACGTACTCAAACATATGCGCCAATCTGGTCAGGAACTGTCTCAAGGAGCCTTACAAGGCCGAAGTTCTCAGCCGCGAGAAGGTTCACTTTTCAATTTCCAAGTGGGCGGACGGCAAGCCCCAGAAGCCCAGTATGTTCTCTCTCTCGCTCCTATTTAGAATT

Coding sequence (CDS)

ATGGCTTCGAACGCAGCGGTGCCCTTTTGGAGAGCGGCGGGGATGACATACATCACGTACTCAAACATATGCGCCAATCTGGTCAGGAACTGTCTCAAGGAGCCTTACAAGGCCGAAGTTCTCAGCCGCGAGAAGGTTCACTTTTCAATTTCCAAGTGGGCGGACGGCAAGCCCCAGAAGCCCAGTATGTTCTCTCTCTCGCTCCTATTTAGAATT

Protein sequence

MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQKPSMFSLSLLFRI

Homology

[Close]

BLAST of MS009648 vs. NCBI nr
Match: XP_022147265.1 (ATP synthase subunit epsilon, mitochondrial [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60

Query: 61 PSMFS 66
          P++ S
Sbjct: 61 PTLRS 65

[Close]

BLAST of MS009648 vs. NCBI nr
Match: MBA0655004.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E LSREKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLS 68
          PSMF  S
Sbjct: 61 PSMFLFS 67

[Close]

BLAST of MS009648 vs. NCBI nr
Match: MBA0619645.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E LSREKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLS 68
          PSMF  S
Sbjct: 61 PSMFLFS 67

[Close]

BLAST of MS009648 vs. NCBI nr
Match: KAE8709934.1 (ATP synthase subunit epsilon [Hibiscus syriacus])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E L+REKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLSLLF 71
          PSM+  ++ F
Sbjct: 61 PSMYLFTIFF 70

[Close]

BLAST of MS009648 vs. NCBI nr
Match: XP_021897296.1 (ATP synthase subunit epsilon, mitochondrial [Carica papaya])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK+E L+REKVHFS+SKWADGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKSEALNREKVHFSVSKWADGKPQK 60

Query: 61 PSMFSLSLLFRI 73
          PS+ S    F I
Sbjct: 61 PSISSFYCFFII 72

[Close]

BLAST of MS009648 vs. ExPASy Swiss-Prot
Match: Q06450 (ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-28
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSN+CAN+VRNCLKEPY+AE LSREKVHFS SKW DGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQK 60

Query: 61 PSMFS 66
          P++ S
Sbjct: 61 PAIRS 65

[Close]

BLAST of MS009648 vs. ExPASy Swiss-Prot
Match: Q96253 (ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g51650 PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-28
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYI+YSNICAN+VRNCLKEP+KAE L+REKVHFS+SKWADGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQK 60

Query: 61 PSMFS 66
          P + S
Sbjct: 61 PVLRS 65

[Close]

BLAST of MS009648 vs. ExPASy Swiss-Prot
Match: Q41898 (ATP synthase subunit epsilon, mitochondrial OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-23
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 2  ASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQKP 61
          A+ AAVPFWRAAGMTYI YSNICA LVRNCLKEP+K+E  SREKVHFSISKW DGK +KP
Sbjct: 3  ATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQEKP 62

Query: 62 SM 64
          ++
Sbjct: 63 TV 64

[Close]

BLAST of MS009648 vs. ExPASy Swiss-Prot
Match: Q75JK6 (ATP synthase subunit epsilon, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=atp5f1e PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 9  FWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQKPSMFSLSL 68
          +WRAAG+TY+ Y+NIC   VRNCLKEP++A   +RE    +   + +GK     + +  L
Sbjct: 5  YWRAAGITYLQYANICGTHVRNCLKEPFRAAAKNREGFISNTVMYQNGKESSTIILNSEL 64

Query: 69 L 70
          L
Sbjct: 65 L 65

[Close]

BLAST of MS009648 vs. ExPASy Swiss-Prot
Match: Q9VXN2 (Protein stunted OS=Drosophila melanogaster OX=7227 GN=sun PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-08
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 10 WRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKP 59
          WRAAG+TYI YSNI A ++R  LK   +A+   R+  H   + WA+GKP
Sbjct: 4  WRAAGITYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANGKP 52

[Close]

BLAST of MS009648 vs. ExPASy TrEMBL
Match: A0A6J1CZN8 (ATP synthase subunit epsilon, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016259 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60

Query: 61 PSMFS 66
          P++ S
Sbjct: 61 PTLRS 65

[Close]

BLAST of MS009648 vs. ExPASy TrEMBL
Match: A0A7J8S133 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_005463 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.2e-28
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E LSREKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLS 68
          PSMF  S
Sbjct: 61 PSMFLFS 67

[Close]

BLAST of MS009648 vs. ExPASy TrEMBL
Match: A0A7J8UXQ1 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_007529 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.2e-28
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E LSREKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLS 68
          PSMF  S
Sbjct: 61 PSMFLFS 67

[Close]

BLAST of MS009648 vs. ExPASy TrEMBL
Match: A0A6A3AYS3 (ATP synthase subunit epsilon OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG00909 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E L+REKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPEK 60

Query: 61 PSMFSLSLLF 71
          PSM+  ++ F
Sbjct: 61 PSMYLFTIFF 70

[Close]

BLAST of MS009648 vs. ExPASy TrEMBL
Match: A0A7J9E938 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_017842 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.6e-27
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYK E LSREKVHFSISKW DGKP+K
Sbjct: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFSISKWTDGKPEK 60

Query: 61 PSM-FSLS 68
          PSM FS S
Sbjct: 61 PSMSFSFS 68

[Close]

BLAST of MS009648 vs. TAIR 10
Match: AT1G51650.1 (ATP synthase epsilon chain, mitochondrial )

HSP 1 Score: 124.4 bits (311), Expect = 3.7e-29
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MASNAAVPFWRAAGMTYITYSNICANLVRNCLKEPYKAEVLSREKVHFSISKWADGKPQK 60
          MASNAAVPFWRAAGMTYI+YSNICAN+VRNCLKEP+KAE L+REKVHFS+SKWADGKPQK
Sbjct: 1  MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQK 60

Query: 61 PSMFS 66
          P + S
Sbjct: 61 PVLRS 65

The following BLAST results are available for this feature:

BLAST of MS009648 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147265.1	8.6e-28	95.38	ATP synthase subunit epsilon, mitochondrial [Momordica charantia]	[more]
MBA0655004.1	1.9e-27	91.04	hypothetical protein [Gossypium klotzschianum]	[more]
MBA0619645.1	1.9e-27	91.04	hypothetical protein [Gossypium davidsonii]	[more]
KAE8709934.1	2.5e-27	84.29	ATP synthase subunit epsilon [Hibiscus syriacus]	[more]
XP_021897296.1	2.5e-27	84.72	ATP synthase subunit epsilon, mitochondrial [Carica papaya]	[more]

BLAST of MS009648 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06450	2.3e-28	86.15	ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=2	[more]
Q96253	5.2e-28	86.15	ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q41898	1.7e-23	79.03	ATP synthase subunit epsilon, mitochondrial OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q75JK6	2.7e-08	42.62	ATP synthase subunit epsilon, mitochondrial OS=Dictyostelium discoideum OX=44689...	[more]
Q9VXN2	7.8e-08	48.98	Protein stunted OS=Drosophila melanogaster OX=7227 GN=sun PE=1 SV=1	[more]

BLAST of MS009648 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZN8	4.1e-28	95.38	ATP synthase subunit epsilon, mitochondrial OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A7J8S133	9.2e-28	91.04	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_005463 PE=3 SV...	[more]
A0A7J8UXQ1	9.2e-28	91.04	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_007529 PE=3...	[more]
A0A6A3AYS3	1.2e-27	84.29	ATP synthase subunit epsilon OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328...	[more]
A0A7J9E938	4.6e-27	91.18	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_017842 PE=3 SV=1	[more]

BLAST of MS009648 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51650.1	3.7e-29	86.15	ATP synthase epsilon chain, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036742	ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial	GENE3D	1.10.1620.20	ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial	coord: 9..64 e-value: 2.0E-25 score: 90.6
IPR036742	ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial	SUPERFAMILY	48690	Epsilon subunit of mitochondrial F1F0-ATP synthase	coord: 7..53
IPR006721	ATP synthase, F1 complex, epsilon subunit, mitochondrial	PFAM	PF04627	ATP-synt_Eps	coord: 9..56 e-value: 2.2E-23 score: 82.0
IPR006721	ATP synthase, F1 complex, epsilon subunit, mitochondrial	PANTHER	PTHR12448	ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL	coord: 1..66
IPR006721	ATP synthase, F1 complex, epsilon subunit, mitochondrial	CDD	cd12153	F1-ATPase_epsilon	coord: 9..53 e-value: 6.90347E-21 score: 74.9869
None	No IPR available	PANTHER	PTHR12448:SF6	BNAC01G32170D PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009648.1	MS009648.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism