MS009647 (gene) Bitter gourd (TR) v1

Overview
NameMS009647
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
Locationscaffold813: 2983546 .. 2983964 (+)
RNA-Seq ExpressionMS009647
SyntenyMS009647
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTGAAATCTCAAACGATCGGATTAGTGGTGAAGTTTTAGAAGACCAAGACTACTTGGAGAAGATAAATAAGCTAGAGGGTTACATGGATGAGGTGAAATTCTTCCTCCAAGTTCCCATCTCAGAAATAATGAAACCATACTTGTTCCTGCACCTTCCTTATGGTTTGCTTAATGGCTTATCGGTTGAGTAATTTATTGTCAATATGATTTTGAGTGTTCACATAATTATAATTTAATTTGGTTTCAGTGTTTTTATCTGGTGCTTGGTGGCTCATGTTCAATTCAGGTGAAGAAGATTGCAAGAGAAAGCTGTTCCCAAGAAGTTGTAGAAGTGGCATTGAGCTCAATCTCCTCCCTAATTACCCTTCTCTCCTCCATGTCTTCTACCAACCTCATCCTCCATTCTTCACTT

mRNA sequence

ATGGAAGCTGAAATCTCAAACGATCGGATTAGTGGTGAAGTTTTAGAAGACCAAGACTACTTGGAGAAGATAAATAAGCTAGAGGGTTACATGGATGAGGTGAAGAAGATTGCAAGAGAAAGCTGTTCCCAAGAAGTTGTAGAAGTGGCATTGAGCTCAATCTCCTCCCTAATTACCCTTCTCTCCTCCATGTCTTCTACCAACCTCATCCTCCATTCTTCACTT

Coding sequence (CDS)

ATGGAAGCTGAAATCTCAAACGATCGGATTAGTGGTGAAGTTTTAGAAGACCAAGACTACTTGGAGAAGATAAATAAGCTAGAGGGTTACATGGATGAGGTGAAGAAGATTGCAAGAGAAAGCTGTTCCCAAGAAGTTGTAGAAGTGGCATTGAGCTCAATCTCCTCCCTAATTACCCTTCTCTCCTCCATGTCTTCTACCAACCTCATCCTCCATTCTTCACTT

Protein sequence

MEAEISNDRISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTNLILHSSL
Homology
BLAST of MS009647 vs. NCBI nr
Match: KAG7025939.1 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 7.1e-17
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 1  MEAEISNDRISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITL 60
          MEAEIS+D+I G+  EDQDYLEKI KL+GY+DEVKKI RESCS+EV+EVALSS+SSLI++
Sbjct: 1  MEAEISDDQIIGKAFEDQDYLEKITKLQGYLDEVKKIVRESCSEEVLEVALSSVSSLISI 60

Query: 61 LSSMSSTNLI--LHSSL 76
          LSSM+S++    LHSSL
Sbjct: 61 LSSMASSSSFTKLHSSL 77

BLAST of MS009647 vs. NCBI nr
Match: XP_016902860.1 (PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like [Cucumis melo] >KAA0059347.1 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.7e-15
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MEAEISND-RISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLIT 60
          MEA++  D +I G VLEDQDYLEKI KL+GY+DEVKKI  ESCSQEV+EVAL+SISSLIT
Sbjct: 1  MEAKVLVDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALNSISSLIT 60

Query: 61 LLSSMSSTNLILHSSL 76
          +LSSMSS+   LHSSL
Sbjct: 61 ILSSMSSSTK-LHSSL 75

BLAST of MS009647 vs. NCBI nr
Match: KGN45427.1 (hypothetical protein Csa_016056 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 8.7e-15
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MEAEISND-RISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLIT 60
          MEA++ +D +I G VLEDQDYLEKI KL+GY+DEVKKI  ESCSQEV+E+AL SISSLIT
Sbjct: 1  MEAKVLDDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLELALDSISSLIT 60

Query: 61 LLSSMSSTNLILHSSL 76
          +LSSMSS+   LHSSL
Sbjct: 61 ILSSMSSSTK-LHSSL 75

BLAST of MS009647 vs. NCBI nr
Match: KAG6593594.1 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSM--SSTNLILH 74
           L +QDYLEKI KL+GY+DEVKKI RESCS+EV+EVALSS+SSLI++LSSM  SS++  LH
Sbjct: 359 LSNQDYLEKITKLQGYLDEVKKIVRESCSEEVLEVALSSVSSLISILSSMASSSSSTKLH 418

Query: 75  SSL 76
           SSL
Sbjct: 419 SSL 421

BLAST of MS009647 vs. NCBI nr
Match: XP_042987994.1 (pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like isoform X1 [Carya illinoinensis])

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 16  EDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTNLILHS 74
           +D DY+EKI +L+GY+D VKKIA+  CS+EV+ VALSS+SSL+ LLSSMSS +  L S
Sbjct: 81  KDLDYMEKIKELQGYLDMVKKIAKPGCSEEVLNVALSSMSSLVNLLSSMSSRSKTLAS 138

BLAST of MS009647 vs. ExPASy Swiss-Prot
Match: Q41140 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis OX=3988 GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 27/55 (49.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTNL 70
           +EDQDY+ +I KL+ Y+D+V+ I +  CSQEV++ ALS ++S+  +L +MSST+L
Sbjct: 557 VEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLLTMSSTSL 611

BLAST of MS009647 vs. ExPASy Swiss-Prot
Match: Q9C9K3 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 OS=Arabidopsis thaliana OX=3702 GN=PFP-ALPHA2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 24/54 (44.44%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTN 69
           +EDQDY+ KI KL+ Y+D+V+ I +  CSQ+V++ ALS ++S+  +L+++SS++
Sbjct: 557 VEDQDYMGKIKKLQEYLDQVRTIVKPGCSQDVLKAALSVMASVTDVLTTISSSS 610

BLAST of MS009647 vs. ExPASy Swiss-Prot
Match: P21342 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum OX=4113 GN=PFP-ALPHA PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.9e-05
Identity = 24/56 (42.86%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTNLI 71
           +EDQDY+ +I KL+ Y+D+V+ I +  CSQ+V++ ALS+++S+  +LS +SS + +
Sbjct: 557 VEDQDYIGRIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMASVTDILSVISSPSSV 612

BLAST of MS009647 vs. ExPASy Swiss-Prot
Match: Q9SYP2 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PFP-ALPHA1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.5e-05
Identity = 23/52 (44.23%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSS 67
           +EDQDY+ +I KL+ Y+D+V+ I +  CSQ+V++ ALS ++S+  +L+++SS
Sbjct: 559 VEDQDYMGRIKKLQEYLDQVRTIVKPGCSQDVLKAALSVMASVTDVLTTISS 610

BLAST of MS009647 vs. ExPASy TrEMBL
Match: A0A5A7UXI5 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00720 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MEAEISND-RISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLIT 60
          MEA++  D +I G VLEDQDYLEKI KL+GY+DEVKKI  ESCSQEV+EVAL+SISSLIT
Sbjct: 1  MEAKVLVDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALNSISSLIT 60

Query: 61 LLSSMSSTNLILHSSL 76
          +LSSMSS+   LHSSL
Sbjct: 61 ILSSMSSSTK-LHSSL 75

BLAST of MS009647 vs. ExPASy TrEMBL
Match: A0A0A0KAL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447890 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MEAEISND-RISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLIT 60
          MEA++ +D +I G VLEDQDYLEKI KL+GY+DEVKKI  ESCSQEV+E+AL SISSLIT
Sbjct: 1  MEAKVLDDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLELALDSISSLIT 60

Query: 61 LLSSMSSTNLILHSSL 76
          +LSSMSS+   LHSSL
Sbjct: 61 ILSSMSSSTK-LHSSL 75

BLAST of MS009647 vs. ExPASy TrEMBL
Match: A0A1S4E4F9 (pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS=Cucumis melo OX=3656 GN=LOC103500631 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MEAEISND-RISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLIT 60
          MEA++  D +I G VLEDQDYLEKI KL+GY+DEVKKI  ESCSQEV+EVAL+SISSLIT
Sbjct: 1  MEAKVLVDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALNSISSLIT 60

Query: 61 LLSSMSSTNLILHSSL 76
          +LSSMSS+   LHSSL
Sbjct: 61 ILSSMSSSTK-LHSSL 75

BLAST of MS009647 vs. ExPASy TrEMBL
Match: A0A2I0AYQ0 (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Apostasia shenzhenica OX=1088818 GN=PFP-ALPHA PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 6   SNDRISGEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMS 65
           S+ +    ++EDQDY+ K+ +L+ Y+D+VKKI +  CSQEV++VALSS++S++ +LS MS
Sbjct: 456 SDSKTISLLVEDQDYMGKVKELQAYIDKVKKIVKPGCSQEVLKVALSSMASVVDILSVMS 515

BLAST of MS009647 vs. ExPASy TrEMBL
Match: A0A5J4ZCX1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_018620 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 12  GEVLEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSS 67
           G  L+D DY+ KI +L+ Y+D+VKKI +  CSQEV+EVALSS+SSL+  LS +SS
Sbjct: 101 GLCLQDHDYIGKIKELQVYVDKVKKIVKPGCSQEVLEVALSSMSSLVETLSVLSS 155

BLAST of MS009647 vs. TAIR 10
Match: AT1G76550.1 (Phosphofructokinase family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 24/54 (44.44%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSSTN 69
           +EDQDY+ KI KL+ Y+D+V+ I +  CSQ+V++ ALS ++S+  +L+++SS++
Sbjct: 557 VEDQDYMGKIKKLQEYLDQVRTIVKPGCSQDVLKAALSVMASVTDVLTTISSSS 610

BLAST of MS009647 vs. TAIR 10
Match: AT1G20950.1 (Phosphofructokinase family protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.6e-06
Identity = 23/52 (44.23%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 15  LEDQDYLEKINKLEGYMDEVKKIARESCSQEVVEVALSSISSLITLLSSMSS 67
           +EDQDY+ +I KL+ Y+D+V+ I +  CSQ+V++ ALS ++S+  +L+++SS
Sbjct: 559 VEDQDYMGRIKKLQEYLDQVRTIVKPGCSQDVLKAALSVMASVTDVLTTISS 610

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025939.17.1e-1771.43Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Cucurbit... [more]
XP_016902860.18.7e-1573.68PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alph... [more]
KGN45427.18.7e-1572.37hypothetical protein Csa_016056 [Cucumis sativus][more]
KAG6593594.12.6e-1173.02Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, partial ... [more]
XP_042987994.16.6e-0762.07pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like isof... [more]
Match NameE-valueIdentityDescription
Q411403.4e-0649.09Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinu... [more]
Q9C9K32.2e-0544.44Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 OS=Arab... [more]
P213424.9e-0542.86Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanu... [more]
Q9SYP26.5e-0544.23Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 OS=Arab... [more]
Match NameE-valueIdentityDescription
A0A5A7UXI54.2e-1573.68Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS... [more]
A0A0A0KAL44.2e-1572.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447890 PE=4 SV=1[more]
A0A1S4E4F94.2e-1573.68pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS... [more]
A0A2I0AYQ01.8e-0548.33Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Aposta... [more]
A0A5J4ZCX11.8e-0558.18Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_018620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76550.11.6e-0644.44Phosphofructokinase family protein [more]
AT1G20950.14.6e-0644.23Phosphofructokinase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR43650:SF14PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHAcoord: 7..68
NoneNo IPR availablePANTHERPTHR43650PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASEcoord: 7..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009647.1MS009647.1mRNA