MS009535 (gene) Bitter gourd (TR) v1

Overview


Name	MS009535
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase III subunit RPC7-like isoform X1
Location	scaffold813: 1995685 .. 1996863 (-)
RNA-Seq Expression	MS009535
Synteny	MS009535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATGTAACCCTACCCAGCGTTAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCCTTTTTCCTAGAGGAGAATGTCTTGAAAAGTTAGTGTCGCTTATTACTTCTCTTTTATTGAAAGCATTGCTATTGCCTTTCTGTCTCGAACATTTTGTTGCATTAGATTTGGTAATTTTGTACACTGCTTGGATTTTTTTTTTTTTTTATATCAGAGATGCAAAGAACCGAGATAGAGAAGTTTTCTGATAGATCCAAGTTAAATAGTACATTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACATCTAGGAACTTCCCTGAAGAATTGGTTGAAGGTTTGTTATCTAAGATCTCTCAGTGAGGGATGAGATATATACTAAGATCATCTGTTTAACTTGGCATTTACAGTAATCCTTTATTTTCAGGTCGCTTTATGTATACTGATACCCTACTGTCAAATTTCAGGTTTCAAAGGGAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGTTTGTTGGGACGATATGAGTTTCTGTCTCTCAACAAATTCAATGCCTATGCTATCTCTATTAGTCAGTTTTGATGGATCCTTGATTTACATATCTTGTTACAGGGCTGCAAAAATTGGACTTTCTCGAGAAGCGCGAAGAATCTCTCAAGGTAAGACATTTTCCACTTCAATCTCTAATTCCATTTATAACTGCAACTCACTCTTTTTTTATATTATTGTTGTGGTTTATAATTAGATATTATTCTACACTTTGCATAAGATCCCTGTGCTGATATTTCTTTTTTGTTTTTACTTCATTAGGGGCAGGACAAGGATGACAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGAAGACGAAGAGGACGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGGTTCTGACTGATATACTGAATATGAATCTAAATCTTCATAAGAGCTCTTTATAGGATCTATTTCCATTTTTCTGTTTCAATTCTTCTGCTTGGCAAAACCTCTTGTATTCACTCTTGAAATATTTTCTCCCACTGACATCACTGAGTTGCAGAACGAATACTTCGACGATGACGAAGACGATTACAACATGGAAGACGATGGTGGA

mRNA sequence

CAGAATGTAACCCTACCCAGCGTTAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCCTTTTTCCTAGAGGAGAATGTCTTGAAAAAGATGCAAAGAACCGAGATAGAGAAGTTTTCTGATAGATCCAAGTTAAATAGTACATTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACATCTAGGAACTTCCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTCGAGAAGCGCGAAGAATCTCTCAAGGGGCAGGACAAGGATGACAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGAAGACGAAGAGGACGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGAACGAATACTTCGACGATGACGAAGACGATTACAACATGGAAGACGATGGTGGA

Coding sequence (CDS)

CAGAATGTAACCCTACCCAGCGTTAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCCTTTTTCCTAGAGGAGAATGTCTTGAAAAAGATGCAAAGAACCGAGATAGAGAAGTTTTCTGATAGATCCAAGTTAAATAGTACATTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACATCTAGGAACTTCCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTCGAGAAGCGCGAAGAATCTCTCAAGGGGCAGGACAAGGATGACAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGAAGACGAAGAGGACGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGAACGAATACTTCGACGATGACGAAGACGATTACAACATGGAAGACGATGGTGGA

Protein sequence

QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

Homology

[Close]

BLAST of MS009535 vs. NCBI nr
Match: XP_022154143.1 (ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154151.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154160.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154168.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST
Sbjct: 31  ENVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 90

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD
Sbjct: 91  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 150

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
Sbjct: 151 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 202

[Close]

BLAST of MS009535 vs. NCBI nr
Match: XP_023548752.1 (DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 6.5e-74
Identity = 154/172 (89.53%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQRTEIE+FSDR+K NST
Sbjct: 29  ENVTLPNVSDIPEAKGLVICNSRLLNYWKASPFYLEENVMKKMQRTEIERFSDRTKSNST 88

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPESGL KLDFLEKREESLKGQ+
Sbjct: 89  LKRDSLAQILQLTSRNFPEELVEGFKGKLRSKRKVQWNPESGLTKLDFLEKREESLKGQN 148

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGE  EDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 149 KDDKEKKEGEGEEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 200

[Close]

BLAST of MS009535 vs. NCBI nr
Match: XP_038898866.1 (glutamic acid-rich protein-like isoform X3 [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 8.5e-74
Identity = 154/172 (89.53%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           QNVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NST
Sbjct: 20  QNVTLPIVSDMPEEKSLAIRNNKFLNYWKASPFYLEENVMKKMQRTEVEKFSDRSKSNST 79

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPESGLQKLDFLEKREESLKGQD
Sbjct: 80  LKRDSLAQILQLTSRNFPEELVDGFKGKLRTKRKVQWNPESGLQKLDFLEKREESLKGQD 139

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 140 KDDKEKKEGEEGEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 191

[Close]

BLAST of MS009535 vs. NCBI nr
Match: XP_038898860.1 (glutamic acid-rich protein-like isoform X1 [Benincasa hispida] >XP_038898861.1 glutamic acid-rich protein-like isoform X1 [Benincasa hispida] >XP_038898862.1 glutamic acid-rich protein-like isoform X1 [Benincasa hispida] >XP_038898863.1 glutamic acid-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 8.5e-74
Identity = 154/172 (89.53%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           QNVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NST
Sbjct: 75  QNVTLPIVSDMPEEKSLAIRNNKFLNYWKASPFYLEENVMKKMQRTEVEKFSDRSKSNST 134

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPESGLQKLDFLEKREESLKGQD
Sbjct: 135 LKRDSLAQILQLTSRNFPEELVDGFKGKLRTKRKVQWNPESGLQKLDFLEKREESLKGQD 194

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 195 KDDKEKKEGEEGEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 246

[Close]

BLAST of MS009535 vs. NCBI nr
Match: XP_038898864.1 (glutamic acid-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 153/172 (88.95%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NST
Sbjct: 30  ENVTLPIVSDMPEEKSLAIRNNKFLNYWKASPFYLEENVMKKMQRTEVEKFSDRSKSNST 89

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPESGLQKLDFLEKREESLKGQD
Sbjct: 90  LKRDSLAQILQLTSRNFPEELVDGFKGKLRTKRKVQWNPESGLQKLDFLEKREESLKGQD 149

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 150 KDDKEKKEGEEGEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 201

[Close]

BLAST of MS009535 vs. ExPASy TrEMBL
Match: A0A6J1DMV9 (ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=3673 GN=LOC111021466 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST
Sbjct: 31  ENVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 90

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD
Sbjct: 91  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 150

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
Sbjct: 151 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 202

[Close]

BLAST of MS009535 vs. ExPASy TrEMBL
Match: A0A6J1GNY2 (glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 152/172 (88.37%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQ+TEIE+FSDR+K NST
Sbjct: 29  ENVTLPNVSDIPEAKGLVICNSRLLNYWKASPFYLEENVMKKMQKTEIERFSDRTKSNST 88

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPESGL KLDFLEKREESLKGQ+
Sbjct: 89  LKRDSLAQILQLTSRNFPEELVEGFKGKLRSKRKVQWNPESGLTKLDFLEKREESLKGQN 148

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGE  EDE++E+DDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 149 KDDKEKKEGEGEEDEDEEDDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 200

[Close]

BLAST of MS009535 vs. ExPASy TrEMBL
Match: A0A6J1JVL5 (DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 GN=LOC111488719 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.5e-73
Identity = 152/172 (88.37%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQ+ EIE+FSDR+K NST
Sbjct: 29  ENVTLPNVSDIPEAKGLVICNSRLLNYWKASPFYLEENVMKKMQKIEIERFSDRAKSNST 88

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPESGL KLDFLEKREESLKGQ+
Sbjct: 89  LKRDSLAQILQLTSRNFPEELVEGFKGKLRSKRKVQWNPESGLTKLDFLEKREESLKGQN 148

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           KDDKEKKEGE  EDE++EED+AQSEELTDDDYYQNEYFDDDEDDYNMED+GG
Sbjct: 149 KDDKEKKEGEGEEDEDEEEDEAQSEELTDDDYYQNEYFDDDEDDYNMEDEGG 200

[Close]

BLAST of MS009535 vs. ExPASy TrEMBL
Match: A0A1S3CGV4 (DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 145/172 (84.30%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLPSVS++PEE  L +     L YWKASPF+LEENV+KKMQRTEIEKFSDR K+NST
Sbjct: 30  ENVTLPSVSEMPEELALAMGQINFLKYWKASPFYLEENVMKKMQRTEIEKFSDRLKMNST 89

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQI+QLTSRNFPEELVEGFKGKLR KRKVQWNPESGL+K+DFLEKREESLKGQD
Sbjct: 90  LKRDSLAQIIQLTSRNFPEELVEGFKGKLRTKRKVQWNPESGLKKMDFLEKREESLKGQD 149

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           K+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 150 KEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 201

[Close]

BLAST of MS009535 vs. ExPASy TrEMBL
Match: A0A5D3BVU1 (DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00450 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 145/172 (84.30%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 60
           +NVTLPSVS++PEE  L +     L YWKASPF+LEENV+KKMQRTEIEKFSDR K+NST
Sbjct: 30  ENVTLPSVSEMPEELALAMGQINFLKYWKASPFYLEENVMKKMQRTEIEKFSDRLKMNST 89

Query: 61  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 120
           LKRDSLAQI+QLTSRNFPEELVEGFKGKLR KRKVQWNPESGL+K+DFLEKREESLKGQD
Sbjct: 90  LKRDSLAQIIQLTSRNFPEELVEGFKGKLRTKRKVQWNPESGLKKMDFLEKREESLKGQD 149

Query: 121 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
           K+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Sbjct: 150 KEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGG 201

[Close]

BLAST of MS009535 vs. TAIR 10
Match: AT4G01590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 0


Query: 3   VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLN 62
           +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ 
Sbjct: 29  ITLPDPKSISTDSQLVQSYFTFNKFWRNSPYHLGDGGVSKKEKESLNIERYSDSLKPKMK 88

Query: 63  STLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKG 122
           S  K  S    L L   NFP+EL+   + + R  ++ +W+ E+ LQKLD  EK E   K 
Sbjct: 89  SN-KNGSFFDFLVLRPDNFPKELLGDTRREQRPVKRAKWSQEADLQKLDVFEKLEAKFKV 148

Query: 123 QDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG 172
           + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Sbjct: 149 EGKEEK-----EEGEDDE-EVVESEGEESDNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]

BLAST of MS009535 vs. TAIR 10
Match: AT4G01590.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 0


Query: 3   VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLN 62
           +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ 
Sbjct: 29  ITLPDPKSISTDSQLVQSYFTFNKFWRNSPYHLGDGGVSKKEKESLNIERYSDSLKPKMK 88

Query: 63  STLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKG 122
           S  K  S    L L   NFP+EL+   + + R  ++ +W+ E+ LQKLD  EK E   K 
Sbjct: 89  SN-KNGSFFDFLVLRPDNFPKELLGDTRREQRPVKRAKWSQEADLQKLDVFEKLEAKFKV 148

Query: 123 QDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG 172
           + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Sbjct: 149 EGKEEK-----EEGEDDE-EVVESEGEESDNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]

BLAST of MS009535 vs. TAIR 10
Match: AT4G01590.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 0


Query: 3   VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLN 62
           +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ 
Sbjct: 29  ITLPDPKSISTDSQLVQSYFTFNKFWRNSPYHLGDGGVSKKEKESLNIERYSDSLKPKMK 88

Query: 63  STLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKG 122
           S  K  S    L L   NFP+EL+   + + R  ++ +W+ E+ LQKLD  EK E   K 
Sbjct: 89  SN-KNGSFFDFLVLRPDNFPKELLGDTRREQRPVKRAKWSQEADLQKLDVFEKLEAKFKV 148

Query: 123 QDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG 172
           + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Sbjct: 149 EGKEEK-----EEGEDDE-EVVESEGEESDNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]

BLAST of MS009535 vs. TAIR 10
Match: AT4G35680.1 (Arabidopsis protein of unknown function (DUF241) )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 55/172 (31.98%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 3   VTLPSVSDVPEEKGLVICNSRLL--NYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNST 62
           +TLP    +  +  LV+  S      +W  SP+ L +  + K ++  ++           
Sbjct: 354 ITLPDPKSISTDSQLVVVQSYFTFNKFWMNSPYHLCDGGVSKKEKASLD----------- 413

Query: 63  LKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESLKGQD 122
           ++R            NF +ELV   + + R  ++ +W+ E+ LQKLD  EK E   K Q 
Sbjct: 414 IERPD----------NFSKELVGDTRREQRPVKRAKWSQEADLQKLDVFEKLESKFKTQG 473

Query: 123 KDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG 173
            ++K     E+GED+E +  +++ EE  + DY QN+ FDDDEDDYN E+DGG
Sbjct: 474 NEEK-----EDGEDDE-QVVESEGEESDNGDYDQNQDFDDDEDDYNHEEDGG 498

The following BLAST results are available for this feature:

BLAST of MS009535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154143.1	2.2e-82	99.42	ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_02...	[more]
XP_023548752.1	6.5e-74	89.53	DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo]	[more]
XP_038898866.1	8.5e-74	89.53	glutamic acid-rich protein-like isoform X3 [Benincasa hispida]	[more]
XP_038898860.1	8.5e-74	89.53	glutamic acid-rich protein-like isoform X1 [Benincasa hispida] >XP_038898861.1 g...	[more]
XP_038898864.1	1.9e-73	88.95	glutamic acid-rich protein-like isoform X2 [Benincasa hispida]	[more]

BLAST of MS009535 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMV9	1.1e-82	99.42	ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=36...	[more]
A0A6J1GNY2	1.6e-73	88.37	glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE...	[more]
A0A6J1JVL5	3.5e-73	88.37	DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3CGV4	3.0e-69	84.30	DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 ...	[more]
A0A5D3BVU1	3.0e-69	84.30	DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var...	[more]

BLAST of MS009535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01590.1	3.6e-14	36.99	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein...	[more]
AT4G01590.2	3.6e-14	36.99	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein...	[more]
AT4G01590.3	3.6e-14	36.99	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G35680.1	4.6e-09	31.98	Arabidopsis protein of unknown function (DUF241)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PFAM	PF11705	RNA_pol_3_Rpc31	coord: 13..163 e-value: 3.8E-10 score: 40.4
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PANTHER	PTHR15367	DNA-DIRECTED RNA POLYMERASE III	coord: 2..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..172
None	No IPR available	PANTHER	PTHR15367:SF2	DNA-DIRECTED RNA POLYMERASE III SUBUNIT	coord: 2..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009535.1	MS009535.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III