MS009507 (gene) Bitter gourd (TR) v1

Overview
NameMS009507
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 3, chloroplastic
Locationscaffold813: 1796814 .. 1798520 (-)
RNA-Seq ExpressionMS009507
SyntenyMS009507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATGTAAGTCGTTGTGCCGAATTTGGGGTTTTAATGTGGATTGCCTTGCCTAATCGTGTGTTTTTCTAGTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATGTGAGTTTTTCCACTTCCTCAACTTTATGTAATGATAATAATAATGGGTTTTCAAACGATTTACTGTGTCATTCCTCCTTTGATGTTCTCTTGCAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGGTGATTTTACTTGCTTTAGAATTTGGATCATGTTATGTTATGAAGAGGATTTATTCAGTGCCCTTTTCATTTCGTCTTTCTGAAACAAATTGTTTGTTTAATCATTATGGTAAAGTTTAAAATGATGGTTTAAATCTCATTTTGGTCAGTCAAACTTTCAAGCTGGTTCAATTTTAGTCCATGATATTTCAAAATGTCTATTTTGGTCTGTGAATCTTCAAGTTTGCTCCATTTTGATCCCGAGCATTCAAATCTCTGTTTTAGTCTATGAACCTCCAAAAAATTATCATTTTAGTCCTTGTCATATTATTTTGCCACCTTAACTATGAACTCACATTAACATGTTAGTACACATACTTAAAAGTTACGTGTTAATTTGTTAATAACAAAATATAGTTTAGGACCCAAATTTTTGTTTTCTGGGACCAAAGTAGTTTTTCTCTTTTTAAGTTTAGGAACTTTTGAAAGTTTAGATACCAAAATAAAACAAACTTAAAAGTTCAAGGACTAAATTGTACATTTTAAAAGTTCGGGAACCAAAGTAGAATAATCTCGTAAATTTAGGAAATAAAAAAGGATTTTTAGTGAAGGATTTCCACAGGCTGGCATTGAAGTTTAAAACTCAATTTCCTGTGCATTTGCCCATTGAAAAACGACTGAAATGAAGAAGAAATTCAATCTTAATCTCTGACTGAACCATTTTACTGTCCCAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGGTAAGTAAAACAGTAGCCGTTGACATTCTGCACACTCAAACAGAGAATTCATGACATTTCTTTTAGTTTCAATCATTTTTAACGTCTCTTTCTAGCTGAATCAACCCAAGAAATCTAATGATTTTGTTTCATATATGTACAGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGGTAATCTGTACAAGTTTGATTGATGATGATGTTGAATACAACAGTCTCCTCTCTTTCACAAAAGTTCATGAGTATTTTTTGTGTTTTCTTTGGCTGCAGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCA

mRNA sequence

ATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCA

Coding sequence (CDS)

ATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCA

Protein sequence

MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYEKVELSESSESS
Homology
BLAST of MS009507 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 404.8 bits (1039), Expect = 4.2e-109
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYEKVELSESSESS
Sbjct: 181 HEWGYEKVELSESSESS 197

BLAST of MS009507 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 380.9 bits (977), Expect = 6.4e-102
Identity = 183/197 (92.89%), Postives = 191/197 (96.95%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSYRLSSSSS RSFNYIT+S+ TLKR RPL+FRRA IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYEKVE+SESSES+
Sbjct: 181 HEWGYEKVEISESSESA 197

BLAST of MS009507 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSY L SSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

BLAST of MS009507 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 370.9 bits (951), Expect = 6.7e-99
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTVPQSQSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

BLAST of MS009507 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

BLAST of MS009507 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-64
Identity = 124/192 (64.58%), Postives = 143/192 (74.48%), Query Frame = 0

Query: 6   LGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNF---------RRAKIRAVGTVPQSQSET 65
           +GS +LS S  + S     + +H  K  +P ++         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
            D P+EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

BLAST of MS009507 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYEKVELSESSESS
Sbjct: 181 HEWGYEKVELSESSESS 197

BLAST of MS009507 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSY L SSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

BLAST of MS009507 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTVPQSQSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

BLAST of MS009507 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.5e-99
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

BLAST of MS009507 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.2e-97
Identity = 175/197 (88.83%), Postives = 184/197 (93.40%), Query Frame = 0

Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLG      SSS RSFNYITNSTHTL R RPL FRR+KIRAVGTVPQSQS+T++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYEKVELSESSESS
Sbjct: 181 HEWGYEKVELSESSESS 191

BLAST of MS009507 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 124/192 (64.58%), Postives = 143/192 (74.48%), Query Frame = 0

Query: 6   LGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNF---------RRAKIRAVGTVPQSQSET 65
           +GS +LS S  + S     + +H  K  +P ++         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
            D P+EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

BLAST of MS009507 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 0

Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

BLAST of MS009507 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-25
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0

Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

BLAST of MS009507 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-16
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKR 149
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

BLAST of MS009507 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145222.14.2e-109100.00photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia... [more]
XP_038899995.16.4e-10292.89photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida][more]
XP_004141758.12.7e-10091.37photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K... [more]
KAA0059320.16.7e-9990.36photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400... [more]
XP_008462178.11.1e-9890.36PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ... [more]
Match NameE-valueIdentityDescription
Q9LU212.5e-6464.58Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali... [more]
Match NameE-valueIdentityDescription
A0A6J1CVZ72.0e-109100.00photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant... [more]
A0A0A0KC781.3e-10091.372Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C... [more]
A0A5A7UW393.2e-9990.36Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3CGA85.5e-9990.36photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3... [more]
A0A6J1KDJ15.2e-9788.83photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ... [more]
Match NameE-valueIdentityDescription
AT3G16250.11.8e-6564.58NDH-dependent cyclic electron flow 1 [more]
AT4G32590.11.6e-2943.152Fe-2S ferredoxin-like superfamily protein [more]
AT4G32590.38.9e-2542.222Fe-2S ferredoxin-like superfamily protein [more]
AT4G32590.42.6e-1639.132Fe-2S ferredoxin-like superfamily protein [more]
AT4G32590.21.1e-0936.172Fe-2S ferredoxin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPFAMPF00111Fer2coord: 113..161
e-value: 2.9E-10
score: 40.0
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainCDDcd00207fer2coord: 90..161
e-value: 1.92274E-8
score: 47.7748
IPR012675Beta-grasp domain superfamilyGENE3D3.10.20.30coord: 74..181
e-value: 7.7E-19
score: 69.4
NoneNo IPR availablePANTHERPTHR23426FERREDOXIN/ADRENODOXINcoord: 1..188
NoneNo IPR availablePANTHERPTHR23426:SF27PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTICcoord: 1..188
IPR0360102Fe-2S ferredoxin-like superfamilySUPERFAMILY542922Fe-2S ferredoxin-likecoord: 83..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009507.1MS009507.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051536 iron-sulfur cluster binding