MS009344 (gene) Bitter gourd (TR) v1

Overview


Name	MS009344
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold813: 481472 .. 481759 (-)
RNA-Seq Expression	MS009344
Synteny	MS009344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACGATGGAGATTATCCCTTTGGAAGGAATTTTAGCGACTGCGGCCGTCTTCTTCCTTGTCCAGATTCTCGTTTATCTCATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACACGAAAAGGTCTCTCAGTTTCAGGCACGTTCGTTCTCTGAGCATTCGTCGGATTTTGGCAGCTCTTTCCGACGTACCGTCCGGCGGCGAGCCGTCTCCTCCGAATGAAAGTCCGTCGCCATTCTCGATCGGTGGAGAATGCGCGGCGATGTTCAGTGACGGCAGTTCT

mRNA sequence

ATGATGACGATGGAGATTATCCCTTTGGAAGGAATTTTAGCGACTGCGGCCGTCTTCTTCCTTGTCCAGATTCTCGTTTATCTCATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACACGAAAAGGTCTCTCAGTTTCAGGCACGTTCGTTCTCTGAGCATTCGTCGGATTTTGGCAGCTCTTTCCGACGTACCGTCCGGCGGCGAGCCGTCTCCTCCGAATGAAAGTCCGTCGCCATTCTCGATCGGTGGAGAATGCGCGGCGATGTTCAGTGACGGCAGTTCT

Coding sequence (CDS)

ATGATGACGATGGAGATTATCCCTTTGGAAGGAATTTTAGCGACTGCGGCCGTCTTCTTCCTTGTCCAGATTCTCGTTTATCTCATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACACGAAAAGGTCTCTCAGTTTCAGGCACGTTCGTTCTCTGAGCATTCGTCGGATTTTGGCAGCTCTTTCCGACGTACCGTCCGGCGGCGAGCCGTCTCCTCCGAATGAAAGTCCGTCGCCATTCTCGATCGGTGGAGAATGCGCGGCGATGTTCAGTGACGGCAGTTCT

Protein sequence

MMTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAALSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS

Homology

[Close]

BLAST of MS009344 vs. NCBI nr
Match: XP_022147203.1 (uncharacterized protein LOC111016209 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MMTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60
          MMTMEIIPLEGI+ATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA
Sbjct: 1  MMTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60

Query: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          ALSDVPSGGEPSPPNESPSPFSIGGECAAMF DGSS
Sbjct: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of MS009344 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 67/95 (70.53%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 61 LSDFPSG--TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of MS009344 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19
Identity = 66/95 (69.47%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSL+IRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 61 LSDFPSG--TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of MS009344 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19
Identity = 66/95 (69.47%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSL+IRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 61 LSDFPSG--DGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of MS009344 vs. NCBI nr
Match: XP_022991948.1 (uncharacterized protein LOC111488440 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-17
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDVPSG-GEP 72
          LSD PSG G+P
Sbjct: 61 LSDFPSGAGDP 71

[Close]

BLAST of MS009344 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.7e-40
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MMTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60
          MMTMEIIPLEGI+ATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA
Sbjct: 1  MMTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60

Query: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          ALSDVPSGGEPSPPNESPSPFSIGGECAAMF DGSS
Sbjct: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of MS009344 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 67/95 (70.53%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFSDGSS 97
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 61 LSDFPSG--TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of MS009344 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.4e-17
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 2  MTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDVPSG-GEP 72
          LSD PSG G+P
Sbjct: 61 LSDFPSGAGDP 71

[Close]

BLAST of MS009344 vs. ExPASy TrEMBL
Match: A0A218WLF6 (uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.6e-13
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MMTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKN-TKRSLSFRHVRSLSIRRIL 60
          M  M+   L  +L    +F LVQ LVYLILSKSSDVFSK+  K+SLSFR VRS+SIRR +
Sbjct: 1  MALMDTNSLGDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFM 60

Query: 61 AALSDVPSGGEPSPPNESP 79
          AALSD+P+GGEPSP   SP
Sbjct: 61 AALSDMPAGGEPSPSPRSP 79

[Close]

BLAST of MS009344 vs. ExPASy TrEMBL
Match: A0A5B7BSX7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041511 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1   MMTMEIIPLEGILATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60
           +M +E   L  IL    +F LVQ LVYL+LSKSS++FSKN  RSLSF+  RS+SIRR+LA
Sbjct: 47  IMAIESSSLGDILMKVGMFALVQALVYLVLSKSSNIFSKNQTRSLSFKPARSVSIRRMLA 106

Query: 61  ALSDVPSGGEPSPPNESPS 80
           AL+D+P+GGEPSP +++ S
Sbjct: 107 ALADMPAGGEPSPTSKNSS 125

[Close]

BLAST of MS009344 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-14
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 10 EGILATAAVFFLVQILVYLILSKSSDVF--SKNTKRSLSFRHVRSLSIRRILAALSDVPS 69
          EG+L   ++F L+Q LVYLILSKSS VF  SK  KR+ SFR  RS+SIRRILA L D+P+
Sbjct: 6  EGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPA 65

Query: 70 GGEPSPPNESPS 80
          GGE SP    PS
Sbjct: 66 GGEMSPSAMGPS 77

[Close]

BLAST of MS009344 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 12 ILATAAVFFLVQILVYLILSKSSDVF--SKNTKRSLSFRHVRSLSIRRILAALSDVPSGG 71
          +L   A+F LVQ LVYLIL KSS VF  S + KR+ SFR +RS+SIRRILAAL D+P+G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 72 EPSPPNESPSPFS 83
          + SP +   S  S
Sbjct: 68 DMSPSSNGSSSSS 80

The following BLAST results are available for this feature:

BLAST of MS009344 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147203.1	7.6e-40	97.92	uncharacterized protein LOC111016209 [Momordica charantia]	[more]
XP_022954080.1	4.3e-19	70.53	uncharacterized protein LOC111456452 [Cucurbita moschata]	[more]
XP_023548863.1	9.7e-19	69.47	uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]	[more]
KAG6575656.1	9.7e-19	69.47	hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991948.1	9.1e-17	81.69	uncharacterized protein LOC111488440 [Cucurbita maxima]	[more]

BLAST of MS009344 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0M4	3.7e-40	97.92	uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1GRF7	2.1e-19	70.53	uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A6J1JXQ0	4.4e-17	81.69	uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440...	[more]
A0A218WLF6	8.6e-13	63.29	uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835...	[more]
A0A5B7BSX7	1.5e-12	58.23	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041511...	[more]

BLAST of MS009344 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	7.7e-14	61.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	3.0e-10	56.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..86
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 9..82
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 9..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009344.1	MS009344.1	mRNA