MS009326 (gene) Bitter gourd (TR) v1

Overview


Name	MS009326
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein 2, chloroplastic
Location	scaffold813: 304675 .. 306716 (+)
RNA-Seq Expression	MS009326
Synteny	MS009326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTGCGTAATTATCTGCCTAAAATGGAATTGTTCTGATTTTTCGTCGTCTTCTTTTGGGGATTTTGAATTTTGTTCGATACCCAGCTTCGAATTTTTGATTTCGGGGGCAATCTGGCTGGACTCTCTTGCGCGCCTTATCTGCTTATTTGTCTTGAATCTTCGCATTGATCGAGTTCACTTGTTCATAAATTCATCAAACTGCTGAGTGTATGCGGGTTTTTGGGCTAAATTTGTTGACCATTATCTTCCAAATGGAGTCTGCAGATTGTTATCTTCTAGAAAGAATTTTGAACCCTTTCTTTACTTTTGTTTTGCACAAGCTTTGAAGCAGATTGTTTAGTTTTCGAGGTTGGATTTGGTTCGATTGTCGTCTATGAATCAAACCGAATCAATTTTCACCTCCATCAAACTAGAACATGATAAGAAGTAGTTCAATAATAGCTAAACACACGGCAGTCCTTGTTTATTGCTTATATATGGTTTCCAAAGTATCCATTCCAACTCGAATATCTTATGTCATTCTCATTAGAACATGCCTGTGGCTGTGGAGCCAATCACATAAGTTTTATCCATTGTTGCTCAGGAATTGGGATCTTATTTCCGGGACACAGGTAAGTTTTAGGTCTTTAAGGAGAGGGATGAGTTCATAGGAGGTGAAAGGACAGTTACATTCTGTTAGTCAACAGTAAGTAGCCATGTATTAAGGGGACAGAGACTCAGAGAGTGTAGAGGAAGTCAGGAAGATGTTAGGAGAAACAGAATCAAATCCTCTGAAAAGCCTGTCATTGGCTCGTAGAACTTCTGTAGGTTATAATTCAATTCTTGCTGCTTTTCGGGTTCGATCAGGGTCGTTATGTTTGCATGAGAATGTCTTAGATAAGCAGATATGGCTTTTCAGCTGCTCGTTGTAGCTGTAGCTGATCTTTAGCTAGAATCTTCTTGGTGACAAATCCAAGTGTAAACTACTTTTGGCACCAGAAAATTAAATGCCGTAGATGCTGTAGCATTTGGTTGACTTCGGTCATGTATCGAACTCACCCCGCACGGCCTTAAACCGAACTGTTTGTTAAATCGAGTAGCTAGCAACTTTCCTTGAATTTTAGCATCACGATCCACTTGTCCTTAGTCTTTACTTGGTGGCTGTTGATGTTGGCTTTAAGACTCCAATTTTCTTCCATTTCCAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGTAAGTTAATACCTACAAAGTGAAATTCTCTCATATTGTCTCACTATATCAGTTGTGCTGACGGTATTGTTCTATCGACAGGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTATGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTGTAAGTAACTTGCTCCCATTCTATATTATACCAGAT

mRNA sequence

ATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTATGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTGTAAGTAACTTGCTCCCATTCTATATTATACCAGAT

Coding sequence (CDS)

ATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTATGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTGTAAGTAACTTGCTCCCATTCTATATTATACCAGAT

Protein sequence

MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIRLFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFNNAVSNLLPFYIIPD

Homology

[Close]

BLAST of MS009326 vs. NCBI nr
Match: XP_022153800.1 (30S ribosomal protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 460.3 bits (1183), Expect = 1.1e-125
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR
Sbjct: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA
Sbjct: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 248

[Close]

BLAST of MS009326 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 2.6e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 246

[Close]

BLAST of MS009326 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 385.6 bits (989), Expect = 3.4e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 246

[Close]

BLAST of MS009326 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 385.6 bits (989), Expect = 3.4e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 202

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 263 ISSFNNAL 268

[Close]

BLAST of MS009326 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.4 bits (986), Expect = 7.7e-103
Identity = 211/248 (85.08%), Postives = 221/248 (89.11%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE AV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 246

[Close]

BLAST of MS009326 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-65
Identity = 131/183 (71.58%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NAV 249
           N++
Sbjct: 242 NSL 242

[Close]

BLAST of MS009326 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64
Identity = 141/252 (55.95%), Postives = 182/252 (72.22%), Query Frame = 0


Query: 1   MASLSSILSPPNLI-HSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTI 60
           MA++SSIL    L+ H S+  + +  K S+Q L  +        L+L + + T+     +
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  RLFAVAEAAVTAQDPSSA---AARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKY 120
           R     E + ++   SS+    ARRLY+GNIPRN++N++L  IVEEHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEES 180
           SGRSRRF FVTMKTV+DANAVIEKLN+TE+ GR IKVNITEKPL     +D++  QAE+S
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL---EGMDIATTQAEDS 180

Query: 181 QFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEE 240
           QF++SPYKVY+GN++ TV+ E LK  FSEKG VL AKV R PGTSKS+G+GFV+FSSEEE
Sbjct: 181 QFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 240

Query: 241 VETAISSFNNAV 249
           VE AI + NN+V
Sbjct: 241 VEAAIQALNNSV 249

[Close]

BLAST of MS009326 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.1e-27
Identity = 65/182 (35.71%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 64  VAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T Q  +S    RLY+GN+P  + + +L++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQ--ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPY 183
            FVTM ++++A   ++  N +++ GRT+KVN  E P      V  + ++     ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISS 243
           KVY GN+   ++++ LK  F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FN 246
            N
Sbjct: 282 MN 281

[Close]

BLAST of MS009326 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 64/173 (36.99%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 73  DPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           +  S    RLY+GN+P ++ + QL+ I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 133 DANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKVYVGNISS 192
           +A   I   + ++V GRT+KVN  E P      V  + +++    F+DSP+K+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 193 TVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 246
            ++++ L+  F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMN 279

[Close]

BLAST of MS009326 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 0


Query: 71  AQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 130
           A+ P  +   +L++GN+P +VD+  L  + E  G VE  EV+YDK SGRSR F FVTM T
Sbjct: 79  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMST 138

Query: 131 VDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSV-----------------DLSLLQA 190
            ++  A  ++ N  E++GR I+VN    P     S                  + S   A
Sbjct: 139 KEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGA 198

Query: 191 EESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSS 246
              + +DS  +VYVGN+S  V    LK+LFSE+GNV+ AKV     + +S G+GFVT+SS
Sbjct: 199 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 258

[Close]

BLAST of MS009326 vs. ExPASy TrEMBL
Match: A0A6J1DHV7 (30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021229 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 5.3e-126
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR
Sbjct: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA
Sbjct: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 248

[Close]

BLAST of MS009326 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 246

[Close]

BLAST of MS009326 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 246

[Close]

BLAST of MS009326 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 212/248 (85.48%), Postives = 222/248 (89.52%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 202

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 263 ISSFNNAL 268

[Close]

BLAST of MS009326 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.0e-92
Identity = 199/248 (80.24%), Postives = 213/248 (85.89%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIH+S KPTE    LS+QFLRPISFH    LLR+S V    AA+   R
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SS A R+LYIGNIPRNV+NE+LTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTV+DANA IEKLNETEV GR IKVNITEKP+V T  VDLS+LQAEESQFID
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNT--VDLSILQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNAV 249
           ISSFNNA+
Sbjct: 241 ISSFNNAL 240

[Close]

BLAST of MS009326 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 7.2e-67
Identity = 131/183 (71.58%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NAV 249
           N++
Sbjct: 242 NSL 242

[Close]

BLAST of MS009326 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 7.2e-67
Identity = 131/183 (71.58%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NAV 249
           N++
Sbjct: 242 NSL 242

[Close]

BLAST of MS009326 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-29
Identity = 91/257 (35.41%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 1   MASLSSILS------PPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLL----RLSSVL 60
           MA+ S +LS       PNL+H         +  SNQ L   +F    PLL      S   
Sbjct: 1   MAASSVLLSCFKSHHQPNLLHGC-------NYSSNQTLLRFNFSTPKPLLISSRSCSRRF 60

Query: 61  QTSAAKHTIRLFAVA--EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEK 120
           +  +   T++L      + A    DP +A   +LY GN+P NVD+  L +I+++    E 
Sbjct: 61  RVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL 120

Query: 121 AEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDL 180
            EV+Y++ +G+SR FAFVTM  V+D N +I+ L+ TE  GR +KVN  +KP         
Sbjct: 121 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPN------ 180

Query: 181 SLLQAEESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGF 240
                +E  + ++ +K++VGN+S TV++E+L   F E G+V+ A+V     T +S GYGF
Sbjct: 181 -----KEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGF 239

Query: 241 VTFSSEEEVETAISSFN 246
           V +SS+ E+ETA+ S +
Sbjct: 241 VCYSSKAEMETALESLD 239

[Close]

BLAST of MS009326 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-28
Identity = 65/182 (35.71%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 64  VAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T Q  +S    RLY+GN+P  + + +L++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQ--ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPY 183
            FVTM ++++A   ++  N +++ GRT+KVN  E P      V  + ++     ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISS 243
           KVY GN+   ++++ LK  F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FN 246
            N
Sbjct: 282 MN 281

[Close]

BLAST of MS009326 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-25
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 72  QDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S +A  +L++GN+P NVD+ QL ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQF------------- 191
            +  A  ++ N  E++GR ++VN    P       +    +   S F             
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPP----PKREDGFSRGPRSSFGSSGSGYGGGGGS 202

Query: 192 -IDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 248
              S  +VYVGN+S  V    L+ LFSE+G V+ A+V     + +S G+GFVT+ S +EV
Sbjct: 203 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 262

The following BLAST results are available for this feature:

BLAST of MS009326 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153800.1	1.1e-125	99.60	30S ribosomal protein 2, chloroplastic [Momordica charantia]	[more]
XP_022991923.1	2.6e-103	85.48	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022954329.1	3.4e-103	85.48	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	3.4e-103	85.48	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
KAG6575671.1	7.7e-103	85.08	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of MS009326 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYM4	1.0e-65	71.58	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P82277	1.9e-64	55.95	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q39061	7.1e-27	35.71	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	1.6e-26	36.99	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P49314	4.6e-26	39.58	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of MS009326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHV7	5.3e-126	99.60	30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JXN0	1.3e-103	85.48	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	1.7e-103	85.48	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	1.7e-103	85.48	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A5A7UYL6	1.0e-92	80.24	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS009326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	7.2e-67	71.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	7.2e-67	71.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	6.0e-29	35.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	5.1e-28	35.71	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.1e-25	36.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 e-value: 5.4E-25 score: 99.0 coord: 184..257 e-value: 3.9E-15 score: 66.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 82..152 e-value: 2.2E-18 score: 65.8 coord: 185..247 e-value: 1.4E-15 score: 56.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 80..158 score: 17.966896
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 183..246 score: 14.91398
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 170..250 e-value: 3.5E-19 score: 71.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..160 e-value: 1.1E-25 score: 92.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..248
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..248
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 81..158 e-value: 1.53821E-33 score: 114.633
None	No IPR available	CDD	cd00590	RRM_SF	coord: 185..246 e-value: 1.85842E-15 score: 67.3301
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 80..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009326.1	MS009326.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding