MS009285 (gene) Bitter gourd (TR) v1

Overview


Name	MS009285
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	scaffold813: 64038 .. 65037 (-)
RNA-Seq Expression	MS009285
Synteny	MS009285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGTAAAATCGCGAACCCTAAATATTTTTTTGTTCATAGTCTGTTTCATTCGACGATCGATTGCTTTTTTTTTCTCTGTATACAACCACCGGTCGCCGTCTCCGTTGTGATTTGTTTCTGTACGGACCTCCATTTTGTTGCCATTGTAGGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCATACTAGAGAGAGAGGATCATACCGTCGGAAACATCCTCCGCATGTAGGGTTTTCTGTTAATCGGAGATATTTTATGGCGATTTTAACTCGTTCCTTCGTTTTTGTTTAGCGTACTTTGTATTGAGTGTTCTGGCGTGAATAATCAGGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAATACTTATCCGGGTTAGTACTTCGGTTATTTTCCCATCGTGTATATGTTTCTCTGTTGCATGAATGGTTAATTGATGAACAGCACTGTAATCATATTTGCAATCGATGTTGCTTTTTGGCAATGGCAGCTTATACTCTAGATTGGTTATGAATACTGTAACTCTATGGAGAGGTGGAGCCATTTTTCAATTTCAAGAAATTTAAAGGGACAATTGAAGGAGAAAACCTTAAAAGCTTAACTTTTTTATATGATTTTTTAATCTAAAACGAATTAGGAGGGGCTTTGTTATGGTCTGTTCTTGATTAAATTACAATTGACTAATAAGTTCTGTTTGATGTTCTCTTATCATTCATTTTTCGATTCTTTTGATGCATGATGTTAGTATTATGCAGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGGTAACGCTTTCATTCCCCCTTGACCATTTTCTTCTGCAATTTGGGTGTGAT

mRNA sequence

ATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCATACTAGAGAGAGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAATACTTATCCGGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGGTAACGCTTTCATTCCCCCTTGACCATTTTCTTCTGCAATTTGGGTGTGAT

Coding sequence (CDS)

ATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCATACTAGAGAGAGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAATACTTATCCGGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGGTAACGCTTTCATTCCCCCTTGACCATTTTCTTCTGCAATTTGGGTGTGAT

Protein sequence

MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLSFPLDHFLLQFGCD

Homology

[Close]

BLAST of MS009285 vs. NCBI nr
Match: XP_022150995.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELE  LS
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELS 110

[Close]

BLAST of MS009285 vs. NCBI nr
Match: KAA0058617.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLSFPLDHF 117
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELEV LS PLD F
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFF 116

[Close]

BLAST of MS009285 vs. NCBI nr
Match: TYK10426.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLSFPLDHF 117
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELEV LS PLD F
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFF 116

[Close]

BLAST of MS009285 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEIS 110

[Close]

BLAST of MS009285 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEIS 110

[Close]

BLAST of MS009285 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.6e-47
Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLK--FELEV 108
           YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+LK  FE EV
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEV 109

[Close]

BLAST of MS009285 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-24
Identity = 48/102 (47.06%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHT+GN++RMQL  D +++FA 
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLK 103
           Y++PHPL++ + IRI T + ++P++   +++  L +E   L+
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLE 102

[Close]

BLAST of MS009285 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-23
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTL 110
           Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  L+    V +
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of MS009285 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-23
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTL 110
           Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  L+    V +
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of MS009285 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-23
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
          MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN++R QL +D NVLFA 
Sbjct: 1  MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61 YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL 99
          Y++PHPL+++ +IRI T +  SP +A+  A+ DL  EL
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAEL 98

[Close]

BLAST of MS009285 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELE  LS
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELS 110

[Close]

BLAST of MS009285 vs. ExPASy TrEMBL
Match: A0A5D3CJ64 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00720 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLSFPLDHF 117
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELEV LS PLD F
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFF 116

[Close]

BLAST of MS009285 vs. ExPASy TrEMBL
Match: A0A5A7UV57 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00860 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLSFPLDHF 117
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELEV LS PLD F
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFF 116

[Close]

BLAST of MS009285 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEIS 110

[Close]

BLAST of MS009285 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS 111
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELE   S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFS 110

[Close]

BLAST of MS009285 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 188.0 bits (476), Expect = 4.7e-48
Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLK--FELEV 108
           YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+LK  FE EV
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEV 109

[Close]

BLAST of MS009285 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-43
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILIR------------------------------IHTASQSSPMQAYNQA 108
           YQLPHPLKY+I++R                              IHT SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of MS009285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150995.1	2.6e-53	98.18	DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]	[more]
KAA0058617.1	3.5e-53	91.38	DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. mak...	[more]
TYK10426.1	3.5e-53	91.38	DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. mak...	[more]
XP_008461312.1	1.0e-49	90.91	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
XP_004135939.1	1.4e-49	90.91	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]

BLAST of MS009285 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	6.6e-47	80.73	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	4.6e-24	47.06	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	3.0e-23	44.04	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	3.0e-23	44.04	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]
Q9VJE4	6.6e-23	50.00	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of MS009285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DA06	1.3e-53	98.18	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]
A0A5D3CJ64	1.7e-53	91.38	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. m...	[more]
A0A5A7UV57	1.7e-53	91.38	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. m...	[more]
A0A1S3CFN3	5.0e-50	90.91	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1KX24	1.1e-49	90.00	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]

BLAST of MS009285 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	4.7e-48	80.73	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	2.6e-43	63.31	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..107
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..107
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..111 e-value: 6.2E-46 score: 156.9
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..105
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..102 e-value: 2.9E-23 score: 81.4
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..102 e-value: 2.44837E-45 score: 140.42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009285.1	MS009285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity