MS008933 (gene) Bitter gourd (TR) v1

Overview


Name	MS008933
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold446: 133173 .. 133304 (+)
RNA-Seq Expression	MS008933
Synteny	MS008933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGAAACTGGAGCTTCTAACTATGGTGAATGCGCTAACTATGGATATGATGCTAGAAATAGACCGATTTTATATTGCCCTTCGAATA

mRNA sequence

AGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGAAACTGGAGCTTCTAACTATGGTGAATGCGCTAACTATGGATATGATGCTAGAAATAGACCGATTTTATATTGCCCTTCGAATA

Coding sequence (CDS)

AGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGAAACTGGAGCTTCTAACTATGGTGAATGCGCTAACTATGGATATGATGCTAGAAATAGACCGATTTTATATTGCCCTTCGAATA

Protein sequence

SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALRI

Homology

[Close]

BLAST of MS008933 vs. NCBI nr
Match: YP_009752118.1 (Ycf2 protein [Dendrosicyos socotranus] >YP_009752135.1 Ycf2 protein [Dendrosicyos socotranus] >QIT05528.1 Ycf2 protein [Dendrosicyos socotranus] >QIT05545.1 Ycf2 protein [Dendrosicyos socotranus])

HSP 1 Score: 75.9 bits (185), Expect = 9.9e-11
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALTMDMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTMDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. NCBI nr
Match: ASY96395.1 (Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrestis])

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1681 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1723

[Close]

BLAST of MS008933 vs. NCBI nr
Match: YP_009945458.1 (Ycf2 [Sechium edule] >QOE55988.1 Ycf2 [Sechium edule])

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTMDMMSEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. NCBI nr
Match: YP_009751949.1 (Ycf2 protein [Cyclanthera pedata] >YP_009751966.1 Ycf2 protein [Cyclanthera pedata] >QIT04767.1 Ycf2 protein [Cyclanthera pedata] >QIT04784.1 Ycf2 protein [Cyclanthera pedata] >QWQ50151.1 hypothetical protein RF2 [Cyclanthera pedata] >QWQ50152.1 hypothetical protein RF2 [Cyclanthera pedata])

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1685 SGDIDDSDDIDRDLDTELELLTMMNALTMDMMSEIDRFYITLQ 1727

[Close]

BLAST of MS008933 vs. NCBI nr
Match: QRW36598.1 (hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplast RF21 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-12
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DIDDSDDIDRDLDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1686 SDDIDDSDDIDRDLDTELELLTMMNALTMDMMPEIDRFYITLQ 1728

[Close]

BLAST of MS008933 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-12
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DIDDSDDIDR+LDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1699 SNDIDDSDDIDRELDTELELLTMMNALTMDMMSEIDRFYITLQ 1741

[Close]

BLAST of MS008933 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DID SDDIDRDLDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1682 SDDIDASDDIDRDLDTELELLTMMNALTMDMMPEIDRFYITLQ 1724

[Close]

BLAST of MS008933 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DID SDDIDRDLDT+LELLTM+NALTMDMM EIDRFYI L+
Sbjct: 1701 SDDIDASDDIDRDLDTELELLTMMNALTMDMMPEIDRFYITLQ 1743

[Close]

BLAST of MS008933 vs. ExPASy Swiss-Prot
Match: P56786 (Protein Ycf2 OS=Arabidopsis thaliana OX=3702 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DID S+DIDR+LDT+LELLTM+NALTMDMMLEIDRFYI L+
Sbjct: 1695 SDDIDASNDIDRELDTELELLTMMNALTMDMMLEIDRFYITLQ 1737

[Close]

BLAST of MS008933 vs. ExPASy TrEMBL
Match: A0A6H0EUM8 (Protein Ycf2 OS=Dendrosicyos socotranus OX=229694 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-11
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALTMDMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTMDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. ExPASy TrEMBL
Match: A0A249RYX8 (Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. ExPASy TrEMBL
Match: G3ETW1 (Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. ExPASy TrEMBL
Match: A0A249RZ46 (Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. ExPASy TrEMBL
Match: A0A1S4EU72 (Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            SGDIDDSDDIDRDLDT+LELLTM+NALT DMMLEIDRFYI L+
Sbjct: 1683 SGDIDDSDDIDRDLDTELELLTMMNALTKDMMLEIDRFYITLQ 1725

[Close]

BLAST of MS008933 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-12
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DID S+DIDR+LDT+LELLTM+NALTMDMMLEIDRFYI L+
Sbjct: 1695 SDDIDASNDIDRELDTELELLTMMNALTMDMMLEIDRFYITLQ 1737

[Close]

BLAST of MS008933 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-12
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1    SGDIDDSDDIDRDLDTKLELLTMVNALTMDMMLEIDRFYIALR 44
            S DID S+DIDR+LDT+LELLTM+NALTMDMMLEIDRFYI L+
Sbjct: 1695 SDDIDASNDIDRELDTELELLTMMNALTMDMMLEIDRFYITLQ 1737

The following BLAST results are available for this feature:

BLAST of MS008933 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752118.1	9.9e-11	90.70	Ycf2 protein [Dendrosicyos socotranus] >YP_009752135.1 Ycf2 protein [Dendrosicyo...	[more]
ASY96395.1	4.9e-10	88.37	Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrest...	[more]
YP_009945458.1	4.9e-10	88.37	Ycf2 [Sechium edule] >QOE55988.1 Ycf2 [Sechium edule]	[more]
YP_009751949.1	4.9e-10	88.37	Ycf2 protein [Cyclanthera pedata] >YP_009751966.1 Ycf2 protein [Cyclanthera peda...	[more]
QRW36598.1	4.9e-10	88.37	hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplas...	[more]

BLAST of MS008933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	5.5e-12	86.05	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
B1A978	9.3e-12	83.72	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
A0A379	4.6e-11	83.72	Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	4.6e-11	83.72	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
P56786	7.9e-11	81.40	Protein Ycf2 OS=Arabidopsis thaliana OX=3702 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS008933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EUM8	4.8e-11	90.70	Protein Ycf2 OS=Dendrosicyos socotranus OX=229694 GN=ycf2 PE=3 SV=1	[more]
A0A249RYX8	2.4e-10	88.37	Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1	[more]
G3ETW1	2.4e-10	88.37	Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1	[more]
A0A249RZ46	2.4e-10	88.37	Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1	[more]
A0A1S4EU72	2.4e-10	88.37	Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS008933 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	5.6e-12	81.40	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	5.6e-12	81.40	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 3..43
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 3..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008933.1	MS008933.1	mRNA