MS008293 (gene) Bitter gourd (TR) v1

Overview


Name	MS008293
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like
Location	scaffold4: 228193 .. 228324 (-)
RNA-Seq Expression	MS008293
Synteny	MS008293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATATATAATTGATGCAAAAAAGTTCAGCGAGGAGGCAGTAGCCAAAATCACACTGCCACAAAGAGTTCCCTATGGCTTCCATGGTGCTTTCATGCCCATGAATCATGATCTCATGGAGCAAATAATAATC

mRNA sequence

GTATATATAATTGATGCAAAAAAGTTCAGCGAGGAGGCAGTAGCCAAAATCACACTGCCACAAAGAGTTCCCTATGGCTTCCATGGTGCTTTCATGCCCATGAATCATGATCTCATGGAGCAAATAATAATC

Coding sequence (CDS)

GTATATATAATTGATGCAAAAAAGTTCAGCGAGGAGGCAGTAGCCAAAATCACACTGCCACAAAGAGTTCCCTATGGCTTCCATGGTGCTTTCATGCCCATGAATCATGATCTCATGGAGCAAATAATAATC

Protein sequence

VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII

Homology

[Close]

BLAST of MS008293 vs. NCBI nr
Match: XP_022139412.1 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII 45
           VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQII+
Sbjct: 564 VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIIM 607

[Close]

BLAST of MS008293 vs. NCBI nr
Match: XP_008466060.1 (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD 38
           VY++DA+KFSEE +AKITLPQRVPYGFHGAFMP+ ++
Sbjct: 578 VYVLDARKFSEEPIAKITLPQRVPYGFHGAFMPIKNN 614

[Close]

BLAST of MS008293 vs. NCBI nr
Match: XP_022980963.1 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Sbjct: 550 VYIVDAKRFSDEPVAKITLPHRVPYGFHGAFMPIS 584

[Close]

BLAST of MS008293 vs. NCBI nr
Match: XP_016646976.1 (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VY+ID KKFS+E VAKITLP RVPYGFHGAFMPM+
Sbjct: 213 VYVIDTKKFSDEPVAKITLPCRVPYGFHGAFMPMS 247

[Close]

BLAST of MS008293 vs. NCBI nr
Match: XP_022980961.1 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Sbjct: 571 VYIVDAKRFSDEPVAKITLPHRVPYGFHGAFMPIS 605

[Close]

BLAST of MS008293 vs. ExPASy Swiss-Prot
Match: Q8LP17 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum OX=3888 GN=CCD1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-05
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ 42
           V++IDAK+ S E VA + LPQRVPYGFH AF      L EQ
Sbjct: 499 VHVIDAKRMSAEPVAVVELPQRVPYGFH-AFFVTEDQLQEQ 538

[Close]

BLAST of MS008293 vs. ExPASy Swiss-Prot
Match: O65572 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=CCD1 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-04
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII 45
           V +IDAK  S E VA + LP RVPYGFH  F+     L EQ +I
Sbjct: 496 VTVIDAKTMSAEPVAVVELPHRVPYGFHALFV-TEEQLQEQTLI 538

[Close]

BLAST of MS008293 vs. ExPASy Swiss-Prot
Match: C3VEQ4 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar OX=141207 GN=CCD1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-04
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFM 33
           VY+IDAK  S E VA + LP RVPYGFH  F+
Sbjct: 519 VYVIDAKTMSPEPVAVVDLPCRVPYGFHAFFV 550

[Close]

BLAST of MS008293 vs. ExPASy Swiss-Prot
Match: Q94IR2 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris OX=3885 GN=CCD1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-04
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ 42
           V++IDAK  S + VA + LP RVPYGFH AF      L EQ
Sbjct: 501 VHVIDAKTMSADPVAVVELPNRVPYGFH-AFFVTEEQLQEQ 540

[Close]

BLAST of MS008293 vs. ExPASy TrEMBL
Match: A0A6J1CDW2 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like OS=Momordica charantia OX=3673 GN=LOC111010347 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII 45
           VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQII+
Sbjct: 564 VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIIM 607

[Close]

BLAST of MS008293 vs. ExPASy TrEMBL
Match: A0A1S3CQD3 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503600 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD 38
           VY++DA+KFSEE +AKITLPQRVPYGFHGAFMP+ ++
Sbjct: 578 VYVLDARKFSEEPIAKITLPQRVPYGFHGAFMPIKNN 614

[Close]

BLAST of MS008293 vs. ExPASy TrEMBL
Match: A0A6J1FNM1 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445898 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Sbjct: 564 VYIVDAKRFSDEPVAKITLPHRVPYGFHGAFMPIS 598

[Close]

BLAST of MS008293 vs. ExPASy TrEMBL
Match: A0A6J1J0T1 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480255 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Sbjct: 550 VYIVDAKRFSDEPVAKITLPHRVPYGFHGAFMPIS 584

[Close]

BLAST of MS008293 vs. ExPASy TrEMBL
Match: A0A6J1IV34 (carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480255 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN 36
           VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Sbjct: 571 VYIVDAKRFSDEPVAKITLPHRVPYGFHGAFMPIS 605

[Close]

BLAST of MS008293 vs. TAIR 10
Match: AT3G63520.1 (carotenoid cleavage dioxygenase 1 )

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-05
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1   VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII 45
           V +IDAK  S E VA + LP RVPYGFH  F+     L EQ +I
Sbjct: 496 VTVIDAKTMSAEPVAVVELPHRVPYGFHALFV-TEEQLQEQTLI 538

[Close]

BLAST of MS008293 vs. TAIR 10
Match: AT4G19170.1 (nine-cis-epoxycarotenoid dioxygenase 4 )

HSP 1 Score: 40.8 bits (94), Expect = 3.3e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 3   IIDAKKFSEEAVAKITLPQRVPYGFHGAFM 33
           ++DAK    E VA + LP+RVPYGFHG F+
Sbjct: 558 VMDAKSPELEIVAAVRLPRRVPYGFHGLFV 587

The following BLAST results are available for this feature:

BLAST of MS008293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139412.1	1.0e-15	97.73	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Momordica charantia]	[more]
XP_008466060.1	1.6e-08	75.68	PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X3 [Cucum...	[more]
XP_022980963.1	1.0e-07	80.00	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Cucurbita maxima...	[more]
XP_016646976.1	1.0e-07	82.86	PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Prunus mume]	[more]
XP_022980961.1	1.0e-07	80.00	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X1 [Cucurbita maxima...	[more]

BLAST of MS008293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LP17	1.7e-05	58.54	Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum OX=3888 GN=CCD1 ...	[more]
O65572	1.4e-04	52.27	Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
C3VEQ4	2.5e-04	62.50	Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar OX=14...	[more]
Q94IR2	2.5e-04	53.66	Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris OX=3885 GN=...	[more]

BLAST of MS008293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDW2	5.0e-16	97.73	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like OS=Momordica charantia OX=36...	[more]
A0A1S3CQD3	7.7e-09	75.68	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X3 OS=Cucumis melo O...	[more]
A0A6J1FNM1	5.0e-08	80.00	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1J0T1	5.0e-08	80.00	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1IV34	5.0e-08	80.00	carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X1 OS=Cucurbita maxi...	[more]

BLAST of MS008293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63520.1	1.0e-05	52.27	carotenoid cleavage dioxygenase 1	[more]
AT4G19170.1	3.3e-04	56.67	nine-cis-epoxycarotenoid dioxygenase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004294	Carotenoid oxygenase	PFAM	PF03055	RPE65	coord: 2..33 e-value: 3.1E-9 score: 36.5
IPR004294	Carotenoid oxygenase	PANTHER	PTHR10543	BETA-CAROTENE DIOXYGENASE	coord: 1..35
None	No IPR available	PANTHER	PTHR10543:SF103	DIOXYGENASE, PUTATIVE-RELATED	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008293.1	MS008293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen