MS008165 (gene) Bitter gourd (TR) v1

Overview


Name	MS008165
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Trafficking protein particle complex subunit
Location	scaffold703: 732316 .. 734818 (+)
RNA-Seq Expression	MS008165
Synteny	MS008165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCGCTGGTCCTCGATCTGGTGATGCAATATTCGCTAGCGTTGAGCGAGTGGTAAGCTTCTCAACTTCAAGTCTCTCTGTAGTTTTCTCTGTTCCTGCTGTTTGGTTTCTGAGGAATTTTAAGAAAATGTGAGGGAAGAGGTGAAATTTTGATCAATTGTATCGGAAATTATGTCTGTTCTTGATCAGGATTTGCATTTAATTGTGAGCTATGAGAATGCCCAATTTCTAGGTCTTGATTTCGTTTATTTTTTGGGGCTAAAAATTTAATTGATATAGAATGCGGAGCTGTTTACCTTGACTTATGGAGCAACTGTTCGTCAATTGCTTACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGTAATTTTATTCCACTTCACGAGCTTTTTGATCCAACTCGTTTTTCATAGCTTATAATTCTGCTTGTTCCAAAGTTGGTTTTTGTTTTTTTTTTGTCTGAATGATTGATGGATTTGGTTTCGCACTTCATTTTGGTCTTTGATTTGTGATTCTTTTCGTTGCTCAATTGCTCTCTCATCCTTGTATGATCTCATGTGAAGCTGAAGGCAGTTACAGATTGTGTAGCTCAAAGAAATTCCCGGTTGTATGTTTTTTTAAACAAGATACGACTCAATTTTTGTAAAGTGTTTTATCGAATTATGTTATGCAAAGTTCTTTACAAGAAACACATAGGTGGAATAGTTTTTGGAAGCTTAATATTCAGAAACGAAAACAAAAAAACAAAATGATTTTCAAGGGGGCAAAGCATTTCTTTTTCCAGTTAAATTAAATACTTTCTATATTCATTGATGACAGTTCTGTGCTTAAACTTAATAATGTCCTTGAGACAACACACATTAGATTCGCTGATCTGACTGTTTCTTTAAATGTTTTTCAGGGGTTATAACATTGGAATCCGACTGATCGATGAGTTTCTAGCAAAATCTAATATCTCCAGATGTGTTGACTTCAAAGAGACAGCTGAAGTAATTGCGAAGGTAGGTTGTAGTTGAATACATATGCCAAAGTATTTTATTTTTTCTTAAAGCGAACATGAGGCTGTTGAAGTAGCTTTCCCTGTCATTCCCCTACTTGATTGTCACAATTCATATTAGCTATTAGTATCTAATTCCTACCTAGTTTAGGAAACCTCTATTGAAGTCTCGTTGGTTGTTACTTGGTCCTGTCCAACCTTTCTGGTTTGCCTCTGTCTGTAGAACACCACTACTTTTAGCGCTAGGAAAATTTATAAACCAAAAATAGGATATAAGCTAAAAAAAAAGTTGTACCTACAATTAAGTGGTAGTTTTGAGGACAGTGTATGTATATTCTGATGCAAATGCAATAGGCTTTTCAATTGATGTATCGTACATGGTCCATATGCATTTCTGATACCATTGAGTTTTAATGACTTAACTATGAACAAGATTTCTCATATATAATATAACTTTGGATGCAAGTCTTAATCACTTTGGGTTGGAGTGGGTGAAGCCTCTAAAAGTAGTGGGGTAGGCTATGAGCAAACTAGATGCGGGGCACTCCGATACTCCGGTTATGAAACCAAAAAAAAAAAAAAGAAAAAAGAAGTTACTTCTTATAATTTTACTTCTATTCATCTGACATTGACTAGATCTTCATGTCCATTTGGACTTTTTTTTTTCTTTTCCTTTCAATCTAGGTGGGTTTAAAAATGTTTTTGGGTGTGAATGCAACGGTGACCAACTGGGATGCTGAAGGCACCTGCTGCAGTATAGTTCTGGAGGACAATCCATTGGTAGACTTTGTAGAGCTTCCTGATACTTGTCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATTAGAGGAGCACTTGAGATGGTGAGTCTTCTGCATATGTTTTTAGTCTTGCTTAATCGTCTACCATTCATTTTTCCTTTGACTTTCATTTCATGTTTCTTTGAAGGGAAATGTTTTGCCTGTGCTGTGAATTATGATCTTGAAAAACTTTTGTGAGGTCTTTTGTGCTGAGGCTGATTTGGTTTGTGTTTAATCAGTCTCTAAAGTTTAAAATGTGCCTAATAGGTATTCAAACTTTCAATTTTGTGTCTAATAGATCATTGTCATAATCAATATTCTTAAAAATTCACAAAATTCATAAATTTATTAGGCACAAAATTGAAAGTTCAAGATCCTACCTGTAAACAAAACCTCCATTTTATGTGTAGTAGAGTAGATTCATTGATTTTAAAAGGATCGAATATGTTAGAGATCTATTAGACACAAAATAATAATTACATAACTTAAAAGTTTAAAGATTAAACTTATAATTTAACCTAAAAATGTTGAAGTTGCTTGATTTTTACTGTGGTTGGGGCCAGGTGTCAATGAAAACAGAAGTGACATGGCTACGCGACATGCTGAGAGGAGACGACACGTTTGAACTACAAGTAAAACTCCTCAAGCAAGTCCCTGAAGAGTACCCCTACAAAGACGACGAG

mRNA sequence

ATGCCTCCCGCTGGTCCTCGATCTGGTGATGCAATATTCGCTAGCGTTGAGCGAGTGAATGCGGAGCTGTTTACCTTGACTTATGGAGCAACTGTTCGTCAATTGCTTACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGGGTTATAACATTGGAATCCGACTGATCGATGAGTTTCTAGCAAAATCTAATATCTCCAGATGTGTTGACTTCAAAGAGACAGCTGAAGTAATTGCGAAGGTGGGTTTAAAAATGTTTTTGGGTGTGAATGCAACGGTGACCAACTGGGATGCTGAAGGCACCTGCTGCAGTATAGTTCTGGAGGACAATCCATTGGTAGACTTTGTAGAGCTTCCTGATACTTGTCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATTAGAGGAGCACTTGAGATGGTGTCAATGAAAACAGAAGTGACATGGCTACGCGACATGCTGAGAGGAGACGACACGTTTGAACTACAAGTAAAACTCCTCAAGCAAGTCCCTGAAGAGTACCCCTACAAAGACGACGAG

Coding sequence (CDS)

ATGCCTCCCGCTGGTCCTCGATCTGGTGATGCAATATTCGCTAGCGTTGAGCGAGTGAATGCGGAGCTGTTTACCTTGACTTATGGAGCAACTGTTCGTCAATTGCTTACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGGGTTATAACATTGGAATCCGACTGATCGATGAGTTTCTAGCAAAATCTAATATCTCCAGATGTGTTGACTTCAAAGAGACAGCTGAAGTAATTGCGAAGGTGGGTTTAAAAATGTTTTTGGGTGTGAATGCAACGGTGACCAACTGGGATGCTGAAGGCACCTGCTGCAGTATAGTTCTGGAGGACAATCCATTGGTAGACTTTGTAGAGCTTCCTGATACTTGTCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATTAGAGGAGCACTTGAGATGGTGTCAATGAAAACAGAAGTGACATGGCTACGCGACATGCTGAGAGGAGACGACACGTTTGAACTACAAGTAAAACTCCTCAAGCAAGTCCCTGAAGAGTACCCCTACAAAGACGACGAG

Protein sequence

MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYPYKDDE

Homology

[Close]

BLAST of MS008165 vs. NCBI nr
Match: XP_022139368.1 (trafficking protein particle complex subunit 3 [Momordica charantia])

HSP 1 Score: 377.1 bits (967), Expect = 8.8e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. NCBI nr
Match: XP_038896395.1 (trafficking protein particle complex subunit 3 [Benincasa hispida])

HSP 1 Score: 374.4 bits (960), Expect = 5.7e-100
Identity = 184/186 (98.92%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. NCBI nr
Match: XP_022941300.1 (trafficking protein particle complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. NCBI nr
Match: XP_022981618.1 (trafficking protein particle complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 372.9 bits (956), Expect = 1.7e-99
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. NCBI nr
Match: XP_008454543.1 (PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo] >XP_011651467.1 trafficking protein particle complex subunit 3 [Cucumis sativus] >KAA0046487.1 trafficking protein particle complex subunit 3 [Cucumis melo var. makuwa] >KGN57989.1 hypothetical protein Csa_009665 [Cucumis sativus] >TYJ97725.1 trafficking protein particle complex subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-99
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. ExPASy Swiss-Prot
Match: Q86K94 (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=trappc3 PE=3 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 103/174 (59.20%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 9   GDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
           G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct: 9   GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query: 69  NISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQ 128
            I RC DF ETAEVIAKVG KMFLGVNA V +WDA      + +EDNPL+DFVELPD  +
Sbjct: 69  GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query: 129 -GLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYP 182
             L+Y NIL GV+RGALEMV MK + T+++  L  D T E++V L + + +  P
Sbjct: 129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182

[Close]

BLAST of MS008165 vs. ExPASy Swiss-Prot
Match: Q5ZI57 (Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 91/165 (55.15%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETA+VIAK+  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYP 182
            GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

[Close]

BLAST of MS008165 vs. ExPASy Swiss-Prot
Match: O55013 (Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-49
Identity = 90/165 (54.55%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETA+VIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYP 182
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]

BLAST of MS008165 vs. ExPASy Swiss-Prot
Match: Q5U1Z2 (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-49
Identity = 90/165 (54.55%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETA+VIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYP 182
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]

BLAST of MS008165 vs. ExPASy Swiss-Prot
Match: O43617 (Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.8e-49
Identity = 89/165 (53.94%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETA+VIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEYP 182
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]

BLAST of MS008165 vs. ExPASy TrEMBL
Match: A0A6J1CFG3 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111010320 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. ExPASy TrEMBL
Match: A0A6J1FT71 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111446643 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.1e-100
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. ExPASy TrEMBL
Match: A0A6J1J2K9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111480683 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.0e-100
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. ExPASy TrEMBL
Match: A0A5A7TX50 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00240 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. ExPASy TrEMBL
Match: A0A0A0LAM3 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3G419290 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. TAIR 10
Match: AT5G54750.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 341.3 bits (874), Expect = 5.0e-94
Identity = 163/186 (87.63%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKS +SRCVDFKETAE+IAKVG KMFLGV A+VT+WD++GTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180
           VELPDTCQGL+YCN+LSGVIRGALEMVSMKTEVTW RD+LRGDD +ELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]

BLAST of MS008165 vs. TAIR 10
Match: AT5G54750.2 (Transport protein particle (TRAPP) component )

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-91
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQM-------- 60
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQM        
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 61  -----GYNIGIRLIDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTC 120
                GYNIGIRLIDEFLAKS +SRCVDFKETAE+IAKVG KMFLGV A+VT+WD++GTC
Sbjct: 61  DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTC 120

Query: 121 CSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFE 180
           CSI+LEDNPLVDFVELPDTCQGL+YCN+LSGVIRGALEMVSMKTEVTW RD+LRGDD +E
Sbjct: 121 CSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYE 180

Query: 181 LQVKLLKQVPEEYPYKDDE 187
           LQVKLLKQV EEYPYKDDE
Sbjct: 181 LQVKLLKQVAEEYPYKDDE 199

The following BLAST results are available for this feature:

BLAST of MS008165 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139368.1	8.8e-101	100.00	trafficking protein particle complex subunit 3 [Momordica charantia]	[more]
XP_038896395.1	5.7e-100	98.92	trafficking protein particle complex subunit 3 [Benincasa hispida]	[more]
XP_022941300.1	1.3e-99	98.39	trafficking protein particle complex subunit 3-like [Cucurbita moschata]	[more]
XP_022981618.1	1.7e-99	97.85	trafficking protein particle complex subunit 3-like [Cucurbita maxima]	[more]
XP_008454543.1	4.8e-99	98.39	PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo] >XP_011...	[more]

BLAST of MS008165 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86K94	1.1e-50	59.20	Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44...	[more]
Q5ZI57	1.9e-50	55.15	Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPP...	[more]
O55013	1.6e-49	54.55	Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q5U1Z2	1.6e-49	54.55	Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=...	[more]
O43617	4.8e-49	53.94	Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of MS008165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFG3	4.3e-101	100.00	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1FT71	6.1e-100	98.39	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J2K9	8.0e-100	97.85	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7TX50	2.3e-99	98.39	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LAM3	2.3e-99	98.39	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]

BLAST of MS008165 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54750.1	5.0e-94	87.63	Transport protein particle (TRAPP) component	[more]
AT5G54750.2	3.0e-91	81.91	Transport protein particle (TRAPP) component	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	GENE3D	3.30.1380.20	Trafficking protein particle complex subunit 3	coord: 4..185 e-value: 2.1E-90 score: 303.0
None	No IPR available	PANTHER	PTHR13048:SF5	PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED	coord: 1..186
IPR016721	Bet3 family	PIRSF	PIRSF018293	TRAPP_1_Bet3	coord: 4..185 e-value: 5.3E-80 score: 264.9
IPR016721	Bet3 family	PANTHER	PTHR13048	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3	coord: 1..186
IPR016721	Bet3 family	CDD	cd14942	TRAPPC3_bet3	coord: 20..174 e-value: 6.59563E-104 score: 293.262
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 24..171 e-value: 2.0E-36 score: 125.0
IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	SUPERFAMILY	111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 18..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008165.1	MS008165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
cellular_component	GO:0030008	TRAPP complex