MS008051 (gene) Bitter gourd (TR) v1

Overview


Name	MS008051
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	piriformospora indica-insensitive protein 2
Location	scaffold499: 3943 .. 4227 (-)
RNA-Seq Expression	MS008051
Synteny	MS008051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTCAATCGATTCGAAAATTTTAAAATACCCATATTTATCTCGCAGATGTCGAGGTTGAAGGAGGTTCATTTGAGTGGAAGTTTACTCGAAGGACAAATTCTAGAGATGTGGAAAAGCTCGAGAGCCTGCAGAGGATTGGATTTTCCATCATCAAATCAACATGAAAATTCCTCCATCAATGGCGGTGAATTTGAGAAGTCTCATCTCAGTTATGTGGTGCTCGACGGTAATAGTCGTGAAGGAAAATTGCTACCGGAGTTTGGGCTTTTGGAGGCATTGAAA

mRNA sequence

AGCTTCAATCGATTCGAAAATTTTAAAATACCCATATTTATCTCGCAGATGTCGAGGTTGAAGGAGGTTCATTTGAGTGGAAGTTTACTCGAAGGACAAATTCTAGAGATGTGGAAAAGCTCGAGAGCCTGCAGAGGATTGGATTTTCCATCATCAAATCAACATGAAAATTCCTCCATCAATGGCGGTGAATTTGAGAAGTCTCATCTCAGTTATGTGGTGCTCGACGGTAATAGTCGTGAAGGAAAATTGCTACCGGAGTTTGGGCTTTTGGAGGCATTGAAA

Coding sequence (CDS)

AGCTTCAATCGATTCGAAAATTTTAAAATACCCATATTTATCTCGCAGATGTCGAGGTTGAAGGAGGTTCATTTGAGTGGAAGTTTACTCGAAGGACAAATTCTAGAGATGTGGAAAAGCTCGAGAGCCTGCAGAGGATTGGATTTTCCATCATCAAATCAACATGAAAATTCCTCCATCAATGGCGGTGAATTTGAGAAGTCTCATCTCAGTTATGTGGTGCTCGACGGTAATAGTCGTGAAGGAAAATTGCTACCGGAGTTTGGGCTTTTGGAGGCATTGAAA

Protein sequence

SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSINGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK

Homology

[Close]

BLAST of MS008051 vs. NCBI nr
Match: XP_022155606.1 (piriformospora indica-insensitive protein 2 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           SFNRF NF IP FI  M RLKEVHLSG+++ GQI E+W+   +  G+ F           
Sbjct: 278 SFNRFGNFGIPEFIWAMPRLKEVHLSGNMVGGQIPEIWEKLESLSGIGFSGMGLTGKIPP 337

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           +     +S LSY+ LDGNS EGKL PEF LLE LK
Sbjct: 338 SMAVNLRS-LSYLALDGNSLEGKLPPEFELLETLK 371

[Close]

BLAST of MS008051 vs. NCBI nr
Match: KAG5413254.1 (hypothetical protein IGI04_000821 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+WK+     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWKNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ +G++  EFGLLE+ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLDGRIPLEFGLLESAR 365

[Close]

BLAST of MS008051 vs. NCBI nr
Match: XP_009129536.1 (piriformospora indica-insensitive protein 2 [Brassica rapa])

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 365

[Close]

BLAST of MS008051 vs. NCBI nr
Match: RID78001.1 (hypothetical protein BRARA_A00864, partial [Brassica rapa])

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 308 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 367

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 368 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 401

[Close]

BLAST of MS008051 vs. NCBI nr
Match: CAG7886854.1 (unnamed protein product [Brassica rapa] >VDC74379.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 365

[Close]

BLAST of MS008051 vs. ExPASy TrEMBL
Match: A0A6J1DS67 (piriformospora indica-insensitive protein 2 OS=Momordica charantia OX=3673 GN=LOC111022699 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           SFNRF NF IP FI  M RLKEVHLSG+++ GQI E+W+   +  G+ F           
Sbjct: 278 SFNRFGNFGIPEFIWAMPRLKEVHLSGNMVGGQIPEIWEKLESLSGIGFSGMGLTGKIPP 337

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           +     +S LSY+ LDGNS EGKL PEF LLE LK
Sbjct: 338 SMAVNLRS-LSYLALDGNSLEGKLPPEFELLETLK 371

[Close]

BLAST of MS008051 vs. ExPASy TrEMBL
Match: M4D3I6 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 365

[Close]

BLAST of MS008051 vs. ExPASy TrEMBL
Match: A0A078HCJ2 (BnaA01g08320D protein OS=Brassica napus OX=3708 GN=BnaA01g08320D PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 365

[Close]

BLAST of MS008051 vs. ExPASy TrEMBL
Match: A0A3P5Z681 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T00881Z PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 272 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 331

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 332 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 365

[Close]

BLAST of MS008051 vs. ExPASy TrEMBL
Match: A0A398AJW4 (Uncharacterized protein (Fragment) OS=Brassica campestris OX=3711 GN=BRARA_A00864 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF N+ +P+F+++M  LKEV+LSG+LL G+I E+W++     G+ F     H N   
Sbjct: 308 SYNRFGNYGVPLFLAEMPSLKEVYLSGNLLGGRIPEIWRNLEGISGIGFSRMGLHGNIPA 367

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   KS L Y+ LD N+ EG +  EFGLL++ +
Sbjct: 368 SMGSSLKS-LWYLALDNNNLEGSIPIEFGLLDSAR 401

[Close]

BLAST of MS008051 vs. TAIR 10
Match: AT4G28560.1 (ROP-interactive CRIB motif-containing protein 7 )

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-13
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 1   SFNRFENFKIPIFISQMSRLKEVHLSGSLLEGQILEMWKSSRACRGLDFPSSNQHENSSI 60
           S+NRF NF +P+F+++MS L+EVHLSG+ L G+I  +WK+     G+ F       N   
Sbjct: 282 SYNRFGNFGVPLFLAEMSSLREVHLSGNKLGGRIPAIWKNLEGISGIGFSRMGLEGNIPA 341

Query: 61  NGGEFEKSHLSYVVLDGNSREGKLLPEFGLLEALK 96
           + G   K +L ++ LD N+ +G++  EFG L++ +
Sbjct: 342 SMGSSLK-NLCFLALDNNNLDGQIPEEFGFLDSAR 375

The following BLAST results are available for this feature:

BLAST of MS008051 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155606.1	1.7e-12	51.58	piriformospora indica-insensitive protein 2 [Momordica charantia]	[more]
KAG5413254.1	1.5e-11	43.16	hypothetical protein IGI04_000821 [Brassica rapa subsp. trilocularis]	[more]
XP_009129536.1	5.6e-11	42.11	piriformospora indica-insensitive protein 2 [Brassica rapa]	[more]
RID78001.1	5.6e-11	42.11	hypothetical protein BRARA_A00864, partial [Brassica rapa]	[more]
CAG7886854.1	5.6e-11	42.11	unnamed protein product [Brassica rapa] >VDC74379.1 unnamed protein product [Bra...	[more]

BLAST of MS008051 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DS67	8.5e-13	51.58	piriformospora indica-insensitive protein 2 OS=Momordica charantia OX=3673 GN=LO...	[more]
M4D3I6	2.7e-11	42.11	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
A0A078HCJ2	2.7e-11	42.11	BnaA01g08320D protein OS=Brassica napus OX=3708 GN=BnaA01g08320D PE=4 SV=1	[more]
A0A3P5Z681	2.7e-11	42.11	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T00881Z PE=4 SV=...	[more]
A0A398AJW4	2.7e-11	42.11	Uncharacterized protein (Fragment) OS=Brassica campestris OX=3711 GN=BRARA_A0086...	[more]

BLAST of MS008051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28560.1	2.9e-13	37.89	ROP-interactive CRIB motif-containing protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..95 e-value: 1.5E-6 score: 29.2
None	No IPR available	PANTHER	PTHR48057	LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1	coord: 1..94
None	No IPR available	PANTHER	PTHR48057:SF8	PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED	coord: 1..94
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 3..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008051.1	MS008051.1	mRNA