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MS007922 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTGCCAATCCTAGTACTAGCTCCGGCGGGGGAGGGCCGGGAACGGCGAGTGCCGGCGGCGGCGGCGGCGGCGGAGGAGGTGGAGGAGGAGGGCCATGTGGGGCGTGCAAGTTTTTGAGGAGGAAGTGTGTGCCGGGGTGCATATTTGCGCCTTATTTCGACTCCGAGCAAGGCGCGGCCCACTTCGCGGCGGTGCATAAGGTGTTCGGAGCCAGTAACGTGTCGAAGCTCCTCCTTCATATCCCGGTCCACAAGCGCCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAGGCTCGCCTCCGAGATCCCGTCTATGGCTGCGTCGCTCATATTTTCGCTCTTCAACAACAGGTAACACAATTGCAACCCTTCAACAACTTCCCTTAATCTCTTACGTTTAAACACTTTTCAATTAGACTCTTAACTTCACCATCAACAAAACCGAAATAAAGAAGGATGCAATTGAAAAGTGTTAAAATATAAAGGATTAAATTGAAAAAACGCTCAAGTATAAGTTCTTTTTTTTCTTCCTAAACATGATCATCTTGTTTTGTCTTCTCTCTTATTTTGCATGATAGTTGCTAAATCTAGTTTAAATGTGTTGTCTTTTTGTTTTTTTTTTTTTTAATGAAATTTCTATTTATTTCTCTATGTCTGGATATTTTTTCTGGGAATTTTACTTATTTTGAAACAAAGCCAAAGGGAAGTTCTTTAAGCTATTCTGGAAGTGGGAAGTTTATTAAAAGGATTTTTTTTTTTTGATAGGGCAGATATGCCCTTAAATAATAGGGCAGTGCCCTTAAATGGTTAATGAAAAAGTTAGTAAATTTAATTAGGGTGGCAGTTTCTAGTGGGTTTACTGAAAACTAGAGCATCAATATTTTTTTTTATTTTTTGTTGATTATTATCAAATCATGTCTTCGGCGGTTACTGCGGTAAAATACCCTAATTTAAGTGATATGTTTTTTTTTTTGTTTTTTAGTTTATTATTATTATTATTAATTTTTTGCAGTTATTAAGGAAGTGGTCGGTTTGTTGGCTTAAAGTTAAGCTTTTGATTAGGGACAAGAGTCATTTCCTACGTTTCCCCAATATTTAGCTTCTTGTCAGTGTATCTTCTAAACCAAAACACAAAATAAATTGTATTTAAAAAACAAATTAATATTCTACACTTTGTTTTTCTTTAAATACACTATTATATTAATCTTTGTATTCTGATTATTCTTGTAAGGTTTTNNNTTTTATATATATATATATATATTTATTTATTTATTTACTTACTTGAAACCCATTTTCTTTCAGTTGTAAATAACTAAAAAAAAAATTGTTTTGAAAAGCTTATTTTTCATTTTGAAATTTGGTGTAAAATACAAAACAAATAAGTTTTGAAAAATAAAATGTTTATGCATTATGCCTAAATCTATGAGTTGAAATTTTAATTAAAAATTTGATTGTGAAACAAACCATATATGAATATATGGGTAAAGGTAAATGAAACTTATGGAGGGTGGGAAAAAAATCAAAGATTTTTACCATGTGCTCATTCATATGTTTTGATTAGAATTTTTTTAATATCAGGGACTTAATTGGTAAGTTATTTAAATTACAGAGACTAAATTATTATATAAAGCATAATATCTGTGATTAAAGTGTTAAGGAAGTCCAAATATATAAGATTTAGATGGTAATATTTTCTGAAAAATAATTAATATTTTTCTATTTTAACATAAATATTTGAAACATAATTTTGAGTATGTAAAACTCTTATCTTTTTCTTTTTTTCTTCTATTTTTTACCTCTAGATATGCTAGCACATATATTATATATACTGCAGATTAGGAATACCTACTGTGTACTATTAACAGTATGGTTGGTAAATAATTATTTGAGAAAATAGTACAAAGAATTTGAAATTTATTCATTTTTATTATTTTTCCTCAAACAACAATGTTAAACATCAACAAGAAAGCCTTTAAAGGGAAAAAAAAGGAGAAAAAAAACCCCTCATTTTAACAAGCTCTAAAATAATCTTTCTTATATTTGACAAGAAAGCTCAGAAAATCAATGGTCACACGTGTTCTATTATTTTCAATTGTTTTTCACATTATTATTATCATTTTGCTTGTCCTTGATCATGATTTTATTTTATTTTGGTACCTGTAATTCCAGTTTTAGTCATTTTGGTCTTTATTCTTTTAAACGGTTTATTTTAGTTCATGTACTTTTAATTTTTGTTCATTTTAGTCATTATACTTTCAAAATATCTATTTTGGTCCATGTAATTTTAAAAAATATCTATTTTAATCTATATTTGCAAAATTTTATACACAACAAAATTCCTTTAGTAAAAGTTTATGGCTACATTTAGAGAATTTTTCGTAAACGCTTTGAAGTAAAAGAGAAAATGAACAATGGAAATGGTAAAAGTGCAGAGACTGAAAATAGACATTAAAAGTAACTAGGACTAAAATAAACAAAAATTAAGACCAAAATAAATGATTTGAAAGTATAAGAACCAAACCGAAGTTAAAATTATGGACCAAAACATTATTTAAACTTTTTATTTGTTATTTTCCTACTTGTTAAACCATTTATTTTGTATTGTAATATACTCTCAATAGTATTCTTTTTAAGTATCTCAACTAGTGTGAAAAATTATGTAGTTTTCTTTATCTTTTTTTTTTTTCCCTTCTTTTAAGTTAGCTGGTTAAAAAGGGGAATGTCCAGTGGGTCTTTATCTTATCACATTTTACTTTCTAAAGATAAAAAAACTTGCAACTTATTTGCTGCTAATATATGGAAATCTTAATACAAAAATGTACCTCCAATTGTTAAAAGGAAAAAAGACAAAAGAAAAAAAAAAAAAAGACTGTAGAAAGGAAAAAAGGAAGATTAAGGTTTGATTTGATAGTTTGCTTTTGTTTAGCTTCCTATTTTTAGCGATTAAGACTTGGGCCTTAATTATCAAACCAGCCCTAAATTGAAGTAAGATTATTTACTAAAAATGTGTTTACTTTATATTTGAAATATCTTCAAATTTCACTTTTAATTAATTAAACACAATAAACAAAACATTTTAAATGTAGGCTACAAAACAAAGAAATCATATTAGAAACTGATTACATACATAGTTTTTTTTGGTTGTTTATAATGCAACCAAAATCATCATCTCTTTACCTTTTTACCTCTAACCGAGGCATATGCACCTATCCCAAGTCTTAGATCCGAGAGATATTAAAGATTTTTTATATTAAGACTTGAGGGCAGGTGATCCCACAAAAGGTCTCATGTCTTTGTTAATGGGGTTGCCTCTTGAGGGCAATACATAGTAATTTGTATTAGGATAAATTATAAGTTTATTACTGAACTTTGAACGCTTTTTAAATTTTTGTTATATCTAAATAGAAACACTAGTTTAAAAGTGTTTCTGTTTGATAAGTTTTTTATTTTTCAATTTTGAGTTTAGTAGATCTTTGACTTAGAGATGTAAAATTGAAAGTACGAGGGTTTTTTTTCTTTTTATGAAAAATACTAGACCTATTTTGATAGGTTGTAAAATTTAAAAACTTATTAGATAATTCGTATACTCTTTAAACTATAAGGACTGGTTAGACAATTCTCAAACTTCATGACGAAATTTGTAGTTTTGTTAAAAATTTAATTGAATTAGAAGCTTGAATATATGTTGATTTATTGAGTAATTTTTGTGGTGTAATGTGTCAATTAAAAACTTTTGCAGGTTGTGAATTTACAAGCCGAGCTGTCTTACCTTCAAGCACATCTAGCAACACTGGAGCTGCCGTCGCCGCCGAACCCGCCGCCGCCGCCGCCTCCAAGCTTCCCGGCGCAACCGCCGCTGTCCATCTCCGACCTGCCGTCGGCCTCCTCCTTGCCGGCAACTTACGACTTGTCGTCCCTCTTCGACCCCATGGCCCAGCCTGCATGGGCCATGCAACAACGGCTCGACCACCGCCAGTTTGGCGGCGGCGGCGGCTCGTCCACGGCGGCCGGAGAGGGCGATCTTCAGGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCCGTCCCTCTCCAAA ATGAGTGCCAATCCTAGTACTAGCTCCGGCGGGGGAGGGCCGGGAACGGCGAGTGCCGGCGGCGGCGGCGGCGGCGGAGGAGGTGGAGGAGGAGGGCCATGTGGGGCGTGCAAGTTTTTGAGGAGGAAGTGTGTGCCGGGGTGCATATTTGCGCCTTATTTCGACTCCGAGCAAGGCGCGGCCCACTTCGCGGCGGTGCATAAGGTGTTCGGAGCCAGTAACGTGTCGAAGCTCCTCCTTCATATCCCGGTCCACAAGCGCCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAGGCTCGCCTCCGAGATCCCGTCTATGGCTGCGTCGCTCATATTTTCGCTCTTCAACAACAGGTTGTGAATTTACAAGCCGAGCTGTCTTACCTTCAAGCACATCTAGCAACACTGGAGCTGCCGTCGCCGCCGAACCCGCCGCCGCCGCCGCCTCCAAGCTTCCCGGCGCAACCGCCGCTGTCCATCTCCGACCTGCCGTCGGCCTCCTCCTTGCCGGCAACTTACGACTTGTCGTCCCTCTTCGACCCCATGGCCCAGCCTGCATGGGCCATGCAACAACGGCTCGACCACCGCCAGTTTGGCGGCGGCGGCGGCTCGTCCACGGCGGCCGGAGAGGGCGATCTTCAGGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCCGTCCCTCTCCAAA ATGAGTGCCAATCCTAGTACTAGCTCCGGCGGGGGAGGGCCGGGAACGGCGAGTGCCGGCGGCGGCGGCGGCGGCGGAGGAGGTGGAGGAGGAGGGCCATGTGGGGCGTGCAAGTTTTTGAGGAGGAAGTGTGTGCCGGGGTGCATATTTGCGCCTTATTTCGACTCCGAGCAAGGCGCGGCCCACTTCGCGGCGGTGCATAAGGTGTTCGGAGCCAGTAACGTGTCGAAGCTCCTCCTTCATATCCCGGTCCACAAGCGCCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAGGCTCGCCTCCGAGATCCCGTCTATGGCTGCGTCGCTCATATTTTCGCTCTTCAACAACAGGTTGTGAATTTACAAGCCGAGCTGTCTTACCTTCAAGCACATCTAGCAACACTGGAGCTGCCGTCGCCGCCGAACCCGCCGCCGCCGCCGCCTCCAAGCTTCCCGGCGCAACCGCCGCTGTCCATCTCCGACCTGCCGTCGGCCTCCTCCTTGCCGGCAACTTACGACTTGTCGTCCCTCTTCGACCCCATGGCCCAGCCTGCATGGGCCATGCAACAACGGCTCGACCACCGCCAGTTTGGCGGCGGCGGCGGCTCGTCCACGGCGGCCGGAGAGGGCGATCTTCAGGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCCGTCCCTCTCCAAA MSANPSTSSGGGGPGTASAGGGGGGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPNPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQRLDHRQFGGGGGSSTAAGEGDLQALARELLHRHGAPPCSDASSPPSLSK Homology
BLAST of MS007922 vs. NCBI nr
Match: KAA0040004.1 (LOB domain-containing protein 18-like [Cucumis melo var. makuwa] >TYK24497.1 LOB domain-containing protein 18-like [Cucumis melo var. makuwa]) HSP 1 Score: 410.2 bits (1053), Expect = 1.2e-110 Identity = 229/244 (93.85%), Postives = 231/244 (94.67%), Query Frame = 0
BLAST of MS007922 vs. NCBI nr
Match: XP_004145058.1 (LOB domain-containing protein 18 [Cucumis sativus] >KGN46236.1 hypothetical protein Csa_005401 [Cucumis sativus]) HSP 1 Score: 408.7 bits (1049), Expect = 3.5e-110 Identity = 228/244 (93.44%), Postives = 230/244 (94.26%), Query Frame = 0
BLAST of MS007922 vs. NCBI nr
Match: XP_023548284.1 (LOB domain-containing protein 18 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106 Identity = 216/244 (88.52%), Postives = 222/244 (90.98%), Query Frame = 0
BLAST of MS007922 vs. NCBI nr
Match: XP_022958875.1 (LOB domain-containing protein 18-like [Cucurbita moschata]) HSP 1 Score: 389.0 bits (998), Expect = 2.9e-104 Identity = 211/244 (86.48%), Postives = 217/244 (88.93%), Query Frame = 0
BLAST of MS007922 vs. NCBI nr
Match: KAG6574792.1 (LOB domain-containing protein 18, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103 Identity = 212/244 (86.89%), Postives = 217/244 (88.93%), Query Frame = 0
BLAST of MS007922 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2) HSP 1 Score: 279.3 bits (713), Expect = 4.2e-74 Identity = 171/248 (68.95%), Postives = 191/248 (77.02%), Query Frame = 0
BLAST of MS007922 vs. ExPASy Swiss-Prot
Match: O81323 (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.2e-63 Identity = 142/209 (67.94%), Postives = 160/209 (76.56%), Query Frame = 0
BLAST of MS007922 vs. ExPASy Swiss-Prot
Match: O22132 (LOB domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=LBD19 PE=2 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42 Identity = 104/205 (50.73%), Postives = 128/205 (62.44%), Query Frame = 0
BLAST of MS007922 vs. ExPASy Swiss-Prot
Match: O81322 (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2) HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40 Identity = 107/211 (50.71%), Postives = 130/211 (61.61%), Query Frame = 0
BLAST of MS007922 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40 Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 0
BLAST of MS007922 vs. ExPASy TrEMBL
Match: A0A5D3DLI5 (LOB domain-containing protein 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00390 PE=3 SV=1) HSP 1 Score: 410.2 bits (1053), Expect = 5.9e-111 Identity = 229/244 (93.85%), Postives = 231/244 (94.67%), Query Frame = 0
BLAST of MS007922 vs. ExPASy TrEMBL
Match: A0A0A0KEN5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G076840 PE=3 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 1.7e-110 Identity = 228/244 (93.44%), Postives = 230/244 (94.26%), Query Frame = 0
BLAST of MS007922 vs. ExPASy TrEMBL
Match: A0A6J1H4Q1 (LOB domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111460030 PE=3 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104 Identity = 211/244 (86.48%), Postives = 217/244 (88.93%), Query Frame = 0
BLAST of MS007922 vs. ExPASy TrEMBL
Match: A0A6J1KML3 (LOB domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111494694 PE=3 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 6.1e-100 Identity = 213/251 (84.86%), Postives = 220/251 (87.65%), Query Frame = 0
BLAST of MS007922 vs. ExPASy TrEMBL
Match: A0A6J1HHP1 (LOB domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111464166 PE=3 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.4e-99 Identity = 212/250 (84.80%), Postives = 219/250 (87.60%), Query Frame = 0
BLAST of MS007922 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 ) HSP 1 Score: 279.3 bits (713), Expect = 3.0e-75 Identity = 171/248 (68.95%), Postives = 191/248 (77.02%), Query Frame = 0
BLAST of MS007922 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 244.6 bits (623), Expect = 8.2e-65 Identity = 142/209 (67.94%), Postives = 160/209 (76.56%), Query Frame = 0
BLAST of MS007922 vs. TAIR 10
Match: AT2G45410.1 (LOB domain-containing protein 19 ) HSP 1 Score: 174.9 bits (442), Expect = 8.0e-44 Identity = 104/205 (50.73%), Postives = 128/205 (62.44%), Query Frame = 0
BLAST of MS007922 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 ) HSP 1 Score: 167.9 bits (424), Expect = 9.8e-42 Identity = 107/211 (50.71%), Postives = 130/211 (61.61%), Query Frame = 0
BLAST of MS007922 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 ) HSP 1 Score: 164.9 bits (416), Expect = 8.3e-41 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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