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MS007894 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCGGGTCTTAGCAATGGCACCAGGTTATTCAGAGCTTGCGGAACCCTATTGGATTCGCTCAAATCCGCCACCGGAGCTTCCTATTCTTCCGCCGCTTCGACCTCTCACAAGTCGGCGGCCTCGAAGCCGAAGGCGAAGCTGAAAGCTTCCGCCGCTACTTCCACAGAATCCGGAGCAAAGAAAGAGGTCAATCGTTCGTCGGGGATCTTCAAGCCGGTCCAAGTGTCTCCGGCTCTCGGTAGCTTCCTCGGTATGTCCGAGACTTCGCGTTCTGAAGCTGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGGTTACTTCCCTTTCTCTCTTGTTTTTCCTGATATGACCTAATTTTTCTGTATCGTTGTGCTAGTTCCTTATTTCCTGCGCTCTGTTCCTCTGCCTCGTTAAGGTCGCCTTAGTTTCGTTGAGAATACCTTGGAAATTCAAATTTACGTTAGCTTAGAGCTTGAAGTTTGAGGTGGAGTGTTGATTTAATGGAGTATCCGATGAGAGCCCTCTTCGGGCAGATTCTGTATTCAGCATACGTGCATTACAAAAATTTAGAAATATGAAGCCTAGATCGAAGAAGGTTTCCGAAATGGAAAGTCTGAATCTGAAAATTAGGTTAAATTATAAGTTAAAAGTCCCAAATTGCGGTTGCAGATTATGTGTATTTATTTTTTAAAACTTAGAAGAGTTTCATCGACCCATGGTTGATGAACCAAAAAAAATTATATTTCTATTTTATTTCCTACCATAAATAAATAATTTATGTGTATTTATTTTTCTATTTTCACCTGTTCCTAAGTTTAATTTGGATTGAATAATCATAACCAACCTGGTCTTTTTGTAGCCACAATGGCATTTATTCAGTAAGGAGGTTTAAGGATTAATTTGGGTTTATGCTCAGCTCCAAAAAGCTAGCTGCTTAGAGCGGGGAGCACTTGTCAATTTCTTGTCCATTTCATTTGATTTGAGGGAAAACACCTCTAATGTTTTCCTATTATAGGTTTGGTGTAACTGTAATACCAGGATCTGCTCTCTCTTATAAAATGAAATGGATGTCATCCGTGAGTTTCTGTAGTGTGTATCTGTAGTGTGTATGACTTATGCACAGTTTATATAGCAAACGAATTATCATAGTTTGGTCTAGTGGTCAATAAGGACCAATGTAAATAGTAAAGAACTTAAAGGGAATGAGTCCAAACTATGGTAGACACCTACTTAAAGATTAAATATCTTACAAGTTACCTTGACAATCAAATATAGTAGGGTAAGATAGAGAATAGTTAAGTTGCGCGCAAGCGGACCTGGACACTTACGGATATCAAAATATATATATATATATCTCGCAAAAGAAACACCTCAACTTTTTGTATTTTTGTATTGAAGCACCCTAGAAAGTGATCTTGTTCAGCCTGAAGTTTATTATCAACTTACGTCATGGTTCTTTGTGGATGAAAATATTGAAAAAAATATGAGGAAAATGTGGATGTTGATGGATATTCCAAAAAGGCCATGAAAAACACATAATCAGCTATATTATGCTAGTATTTTGTTAATGGTGTTAATGGTATTTTAACCTATTGTTACCTTTTTTTTTTTTTTCTGAGTTTGGAAGATTTTGGTGATGTATATATTTATATGTATATTTTTTTATTTTGTGGTATGCAGAACCCTGGTGATAAGAGAGTGATCCATTGTGATGAGAAGCTGAAGGCAATATTTGATGGCAGAGATAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCT ATGGCGTCGGGTCTTAGCAATGGCACCAGGTTATTCAGAGCTTGCGGAACCCTATTGGATTCGCTCAAATCCGCCACCGGAGCTTCCTATTCTTCCGCCGCTTCGACCTCTCACAAGTCGGCGGCCTCGAAGCCGAAGGCGAAGCTGAAAGCTTCCGCCGCTACTTCCACAGAATCCGGAGCAAAGAAAGAGGTCAATCGTTCGTCGGGGATCTTCAAGCCGGTCCAAGTGTCTCCGGCTCTCGGTAGCTTCCTCGGTATGTCCGAGACTTCGCGTTCTGAAGCTGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCTGGTGATAAGAGAGTGATCCATTGTGATGAGAAGCTGAAGGCAATATTTGATGGCAGAGATAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCT ATGGCGTCGGGTCTTAGCAATGGCACCAGGTTATTCAGAGCTTGCGGAACCCTATTGGATTCGCTCAAATCCGCCACCGGAGCTTCCTATTCTTCCGCCGCTTCGACCTCTCACAAGTCGGCGGCCTCGAAGCCGAAGGCGAAGCTGAAAGCTTCCGCCGCTACTTCCACAGAATCCGGAGCAAAGAAAGAGGTCAATCGTTCGTCGGGGATCTTCAAGCCGGTCCAAGTGTCTCCGGCTCTCGGTAGCTTCCTCGGTATGTCCGAGACTTCGCGTTCTGAAGCTGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCTGGTGATAAGAGAGTGATCCATTGTGATGAGAAGCTGAAGGCAATATTTGATGGCAGAGATAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCT MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS Homology
BLAST of MS007894 vs. NCBI nr
Match: XP_023000111.1 (upstream activation factor subunit spp27-like [Cucurbita maxima]) HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46 Identity = 113/153 (73.86%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of MS007894 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46 Identity = 113/153 (73.86%), Postives = 122/153 (79.74%), Query Frame = 0
BLAST of MS007894 vs. NCBI nr
Match: XP_022155717.1 (uncharacterized protein LOC111022777 [Momordica charantia]) HSP 1 Score: 195.7 bits (496), Expect = 2.9e-46 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
BLAST of MS007894 vs. NCBI nr
Match: XP_023000110.1 (upstream activation factor subunit spp27-like [Cucurbita maxima]) HSP 1 Score: 195.3 bits (495), Expect = 3.8e-46 Identity = 112/153 (73.20%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of MS007894 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 195.3 bits (495), Expect = 3.8e-46 Identity = 111/153 (72.55%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of MS007894 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10 Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 0
BLAST of MS007894 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 0
BLAST of MS007894 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08 Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0
BLAST of MS007894 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06 Identity = 24/68 (35.29%), Postives = 45/68 (66.18%), Query Frame = 0
BLAST of MS007894 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.9e-04 Identity = 31/107 (28.97%), Postives = 51/107 (47.66%), Query Frame = 0
BLAST of MS007894 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 6.3e-47 Identity = 113/153 (73.86%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of MS007894 vs. ExPASy TrEMBL
Match: A0A6J1DQ38 (uncharacterized protein LOC111022777 OS=Momordica charantia OX=3673 GN=LOC111022777 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
BLAST of MS007894 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46 Identity = 112/153 (73.20%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of MS007894 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36 Identity = 92/149 (61.74%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of MS007894 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36 Identity = 92/149 (61.74%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of MS007894 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 132.5 bits (332), Expect = 2.8e-31 Identity = 80/139 (57.55%), Postives = 96/139 (69.06%), Query Frame = 0
BLAST of MS007894 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24 Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0
BLAST of MS007894 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 109.0 bits (271), Expect = 3.3e-24 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0
BLAST of MS007894 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19 Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 0
BLAST of MS007894 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18 Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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