MS007571 (gene) Bitter gourd (TR) v1

Overview
NameMS007571
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMethyltransferase-related protein, putative
Locationscaffold401: 308211 .. 308557 (+)
RNA-Seq ExpressionMS007571
SyntenyMS007571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCCGCTGAGATTTATTCTGATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCGTTCTCCGGAACCTCAAATCTCAACCTCAAGATTTCGAGGCCGCCGGCGACAATTCCGACGCCCACTCCAACGATTCCTCTGCTGCTCATTCTTCCAATTCCACCTCCAAGGTTCTTGTAATTCTTTCTTACGCTAATGGAATTTTTCATTTTCTTTTCTTTTCTTTGTTGTGCGTGAACGATCGTGATTTCTTGAACAGGTGTCTTCGGGGTTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCGTCGTCATCGTCTCCGAAGCGT

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTGATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCGTTCTCCGGAACCTCAAATCTCAACCTCAAGATTTCGAGGCCGCCGGCGACAATTCCGACGCCCACTCCAACGATTCCTCTGCTGCTCATTCTTCCAATTCCACCTCCAAGGTGTCTTCGGGGTTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCGTCGTCATCGTCTCCGAAGCGT

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTGATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCGTTCTCCGGAACCTCAAATCTCAACCTCAAGATTTCGAGGCCGCCGGCGACAATTCCGACGCCCACTCCAACGATTCCTCTGCTGCTCATTCTTCCAATTCCACCTCCAAGGTGTCTTCGGGGTTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCGTCGTCATCGTCTCCGAAGCGT

Protein sequence

MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSGFWTVVDMASGRYLWRHLFPSSSSPKR
Homology
BLAST of MS007571 vs. NCBI nr
Match: XP_022154856.1 (uncharacterized protein LOC111022014 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAA DNSDAHSNDSSAAHSSNSTSKVSSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSNDSSAAHSSNSTSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFPSSSSPKR 87
          FWTVVDMASGRYLWRHLFPSSSSPKR
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSSSPKR 86

BLAST of MS007571 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-SSAAHSSNSTSKVSS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE A DNSDAHSND SS + SS  TS + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-ADDNSDAHSNDLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHLFPSS 82
          GFWTVVDMASGRYLWRHLFPSS
Sbjct: 61 GFWTVVDMASGRYLWRHLFPSS 81

BLAST of MS007571 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 7.3e-26
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-SSAAHSSNSTSKVSS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE A +NSDAHSND SS + SS  TS + S
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-ADENSDAHSNDLSSNSTSSKVTSAMQS 127

Query: 61  GFWTVVDMASGRYLWRHLFPSS 82
           GFWTVVDMASGRYLWRHLFPSS
Sbjct: 128 GFWTVVDMASGRYLWRHLFPSS 148

BLAST of MS007571 vs. NCBI nr
Match: XP_022949071.1 (uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothetical protein SDJN03_00706, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-SSAAHSSNSTSKVSS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFEA  DNSDAHSND SS + SS  TS + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAE-DNSDAHSNDLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHLFPSS 82
          GFWTVVDMASGRYLWR+LFPSS
Sbjct: 61 GFWTVVDMASGRYLWRNLFPSS 81

BLAST of MS007571 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 6.2e-25
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-----SSAAHSSNSTS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE A DNS+ HSND     +S++ SS+S S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-ADDNSETHSNDVSTNSTSSSSSSSSFS 60

Query: 61 KVS----SGFWTVVDMASGRYLWRHLFPSSSSP 85
          KVS    SGFWTVVDMASGRYLWRHL PSS  P
Sbjct: 61 KVSSAMQSGFWTVVDMASGRYLWRHLMPSSKKP 92

BLAST of MS007571 vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.9e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAA DNSDAHSNDSSAAHSSNSTSKVSSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSNDSSAAHSSNSTSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFPSSSSPKR 87
          FWTVVDMASGRYLWRHLFPSSSSPKR
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSSSPKR 86

BLAST of MS007571 vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF  AGDNSD +SN+  ++ SS S SKVSSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDF-VAGDNSDDNSNEFDSSDSS-SCSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFPSSSSP 85
          FWT+VDMASGRYLWRHLFPSS  P
Sbjct: 61 FWTLVDMASGRYLWRHLFPSSKKP 82

BLAST of MS007571 vs. ExPASy TrEMBL
Match: A0A6J1KER9 (uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-SSAAHSSNSTSKVSS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE A +NSDAHSND SS + SS  TS + S
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-ADENSDAHSNDLSSNSTSSKVTSAMQS 127

Query: 61  GFWTVVDMASGRYLWRHLFPSS 82
           GFWTVVDMASGRYLWRHLFPSS
Sbjct: 128 GFWTVVDMASGRYLWRHLFPSS 148

BLAST of MS007571 vs. ExPASy TrEMBL
Match: A0A6J1GAZ0 (uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC111452533 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSND-SSAAHSSNSTSKVSS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFEA  DNSDAHSND SS + SS  TS + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAE-DNSDAHSNDLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHLFPSS 82
          GFWTVVDMASGRYLWR+LFPSS
Sbjct: 61 GFWTVVDMASGRYLWRNLFPSS 81

BLAST of MS007571 vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF  AGDNSD  S +  ++  S S SKVSSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDF-VAGDNSDDSSKELDSS-DSTSCSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFPSSSSP 85
          FWTVVDMASGRYLWRHLFPSS  P
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSKKP 82

BLAST of MS007571 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-14
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLR ILIFLSATLAGFFVL+ L S   D          H++D S +  S     + SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTVVDMASGRYLWRHL 78
          FWT VDMASGRYLW +L
Sbjct: 61 FWTCVDMASGRYLWNNL 77

BLAST of MS007571 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCP+RF+L+F SA LAG+F  + + S P +F++         ++ +     N   K+ +G
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSP-EFDS--------PDELNEKQELNLKKKMENG 60

Query: 61 FWTVVDMASGRYLWRHL 78
          FW  VDMASGRYLWR+L
Sbjct: 61 FWVFVDMASGRYLWRNL 68

BLAST of MS007571 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAAGDNSDAHSNDSSAAHSSNSTSKVSSG 60
          MCPLRF+L+F SA LAG+   R + S P+ F     + +    ++      +   K+ +G
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-----SDELLQAEAKEKQGLDFKRKMDNG 60

Query: 61 FWTVVDMASGRYLWRHL 78
           WT VDMASGRYLWR+L
Sbjct: 61 LWTFVDMASGRYLWRNL 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154856.11.4e-3798.84uncharacterized protein LOC111022014 [Momordica charantia][more]
XP_023525661.12.5e-2686.59uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo][more]
XP_022997733.17.3e-2685.37uncharacterized protein LOC111492605 [Cucurbita maxima][more]
XP_022949071.12.8e-2584.15uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothet... [more]
XP_023519406.16.2e-2576.34uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DPZ06.9e-3898.84uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A0A0LV422.7e-2682.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1[more]
A0A6J1KER93.5e-2685.37uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605... [more]
A0A6J1GAZ01.3e-2584.15uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC1114525... [more]
A0A1S3BWD83.0e-2580.95uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=... [more]
Match NameE-valueIdentityDescription
AT5G58375.13.1e-1455.84Methyltransferase-related protein [more]
AT5G18150.11.6e-1042.86Methyltransferase-related protein [more]
AT5G14602.13.5e-1042.86FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..57
NoneNo IPR availablePANTHERPTHR34132:SF4EXPRESSED PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR34132EMB|CAB87627.1-RELATEDcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007571.1MS007571.1mRNA