MS007569 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGAAGAAGAGGGCCTGGATCGTCACCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC GGAAGAAGAGGGCCTGGATCGTCACCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC GGAAGAAGAGGGCCTGGATCGTCACCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC GRRGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP Homology
BLAST of MS007569 vs. NCBI nr
Match: XP_022154900.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Momordica charantia]) HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18 Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0
BLAST of MS007569 vs. NCBI nr
Match: XP_015869215.1 (EPIDERMAL PATTERNING FACTOR-like protein 6 [Ziziphus jujuba]) HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
BLAST of MS007569 vs. NCBI nr
Match: CAA2951276.1 (EPIDERMAL PATTERNING FACTOR 6 [Olea europaea subsp. europaea]) HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15 Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0
BLAST of MS007569 vs. NCBI nr
Match: XP_012471725.1 (PREDICTED: uncharacterized protein LOC105789061 isoform X1 [Gossypium raimondii] >XP_016713504.1 uncharacterized protein LOC107927047 isoform X1 [Gossypium hirsutum] >KAG4155992.1 hypothetical protein ERO13_D03G145200v2 [Gossypium hirsutum] >TYH81144.1 hypothetical protein ES332_D03G179000v1 [Gossypium tomentosum]) HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of MS007569 vs. NCBI nr
Match: KAA3456557.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 isoform X3 [Gossypium australe] >KAG8496121.1 hypothetical protein CXB51_009456 [Gossypium anomalum]) HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of MS007569 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 2.5e-17 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0
BLAST of MS007569 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.2e-13 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of MS007569 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.4e-12 Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of MS007569 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07 Identity = 27/51 (52.94%), Postives = 29/51 (56.86%), Query Frame = 0
BLAST of MS007569 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 1.4e-07 Identity = 27/51 (52.94%), Postives = 29/51 (56.86%), Query Frame = 0
BLAST of MS007569 vs. ExPASy TrEMBL
Match: A0A6J1DKY2 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111022045 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18 Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0
BLAST of MS007569 vs. ExPASy TrEMBL
Match: A0A6P3Z507 (Epidermal patterning factor-like protein OS=Ziziphus jujuba OX=326968 GN=LOC107406587 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
BLAST of MS007569 vs. ExPASy TrEMBL
Match: A0A6P4PTG5 (Epidermal patterning factor-like protein OS=Gossypium arboreum OX=29729 GN=LOC108480921 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of MS007569 vs. ExPASy TrEMBL
Match: A0A6P4P9M3 (Epidermal patterning factor-like protein OS=Gossypium arboreum OX=29729 GN=LOC108480921 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of MS007569 vs. ExPASy TrEMBL
Match: A0A0B0MS25 (Epidermal patterning factor-like protein OS=Gossypium arboreum OX=29729 GN=LOC108480921 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of MS007569 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 88.6 bits (218), Expect = 1.8e-18 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0
BLAST of MS007569 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 88.6 bits (218), Expect = 1.8e-18 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0
BLAST of MS007569 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 75.5 bits (184), Expect = 1.6e-14 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of MS007569 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 72.8 bits (177), Expect = 1.0e-13 Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of MS007569 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 7.8e-06 Identity = 21/53 (39.62%), Postives = 28/53 (52.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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