MS007349 (gene) Bitter gourd (TR) v1

Overview


Name	MS007349
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UPF0603 protein At1g54780, chloroplastic
Location	scaffold25: 2582942 .. 2584379 (-)
RNA-Seq Expression	MS007349
Synteny	MS007349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCATTCTCTCTCCCCACTCTCTCTCTCTCTCTCCTCTCCTCAGCCCCAAAGCTTCCTCTTCCAAGAATCTCTTGCCCCATTCTCTGCAACCCAGGTCAAAATTTGTTTCTTTCTCTAAGCCCATTTCGCTCACCCTTAAAAAACCCTCTCCTCAGTCGCTCCGATCGTCTCTCCCAATTCCTTCGAATTGGTTCTCCCATCTCCAACATGGACTGGCCGCGCTGGCGATCTCTCTGGCGTTGAATTTCTCCCCATTGTTGGCCGGCGGTGGCAATGCCCTGGCGTCCGAATTCGATGTGCTCAGCGACGGGCCGCCGAAGGAGTCGCATCTGGTGGACGACGCCGGAGTTCTCAGCCGAGTCACGAAGTCGGATTTGAAGAGGCTGCTCTCGGATTTGGAGTCCAGGAAGAATTTCCACATCGATTTCGTCACTGTTAGAAAGCTCACTGTAAGCCACAAACGAGACAAACAAAACCCCGAATGCCCCTTTTCTTTGCTGTGATCCAAACCATAGAACCCAGATACAATATTGAAGCAATAACTTAAGTTTTGTTATTATGGGAAGAGAAAGCTACATTTTCACAGTGGAGAGATTTGAAAATCAATCTTAGATTCATCATATTGTTGTATGATCTCTGATATGAACTTATGAACTATTGGTTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGATGGGAACAACAAAGGCATAGTTGTTCTTGTCACCAGCCAGAAGGAAGGAGCCATTACTGGTGGCCCTGCCTTTATCCAAGCAGTTGGAGAAAACATCCTTGATGCCACAGTAACAGAGAACCTCCCAGGTAAACTAACTGCCTCTTCTTCCACTTCTTTCACTCATGAATGTTGTGTCAAATCTGTCATGAACATTGAACAAAACTCCCATCTGAAGAAGCTGCTAATGCAATTTTCATCAGCCCCTTGCTGAACTTAAATTGTAACACATTACAACTAGTAGATTCCTGTCATGGTACTTGAAACCAAGTCGTCCTTGCATATAAGTATTTCGATATCGGGGAATAGAAAACCGTAAGCAAACTTGTACCAAGTCAGCATAGTTTGGATGCCTTAGTTGCTTAGACTACACCATGCTGCAGACTGATTAAGATTGTTTGTTATGTAACTGCAGTGTTAGCTACTGATGAAAAGTATAATGAGGCGATATATAGCAGCGCGAAGCGGCTAGTCGCTGCCATTGATGGACTTCCAGATCCTGGTGGTCCGTCGTTTAAGGACAATAAGCGCGAATCTAACTTCAAAACAAGGGAAGAGACAGAGGAGAAAAGAGGACAGTTTTCTCTTGTAGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTCTCCAAGAAG

mRNA sequence

ATGGAAACCATTCTCTCTCCCCACTCTCTCTCTCTCTCTCCTCTCCTCAGCCCCAAAGCTTCCTCTTCCAAGAATCTCTTGCCCCATTCTCTGCAACCCAGGTCAAAATTTGTTTCTTTCTCTAAGCCCATTTCGCTCACCCTTAAAAAACCCTCTCCTCAGTCGCTCCGATCGTCTCTCCCAATTCCTTCGAATTGGTTCTCCCATCTCCAACATGGACTGGCCGCGCTGGCGATCTCTCTGGCGTTGAATTTCTCCCCATTGTTGGCCGGCGGTGGCAATGCCCTGGCGTCCGAATTCGATGTGCTCAGCGACGGGCCGCCGAAGGAGTCGCATCTGGTGGACGACGCCGGAGTTCTCAGCCGAGTCACGAAGTCGGATTTGAAGAGGCTGCTCTCGGATTTGGAGTCCAGGAAGAATTTCCACATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGATGGGAACAACAAAGGCATAGTTGTTCTTGTCACCAGCCAGAAGGAAGGAGCCATTACTGGTGGCCCTGCCTTTATCCAAGCAGTTGGAGAAAACATCCTTGATGCCACAGTAACAGAGAACCTCCCAGTGTTAGCTACTGATGAAAAGTATAATGAGGCGATATATAGCAGCGCGAAGCGGCTAGTCGCTGCCATTGATGGACTTCCAGATCCTGGTGGTCCGTCGTTTAAGGACAATAAGCGCGAATCTAACTTCAAAACAAGGGAAGAGACAGAGGAGAAAAGAGGACAGTTTTCTCTTGTAGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTCTCCAAGAAG

Coding sequence (CDS)

ATGGAAACCATTCTCTCTCCCCACTCTCTCTCTCTCTCTCCTCTCCTCAGCCCCAAAGCTTCCTCTTCCAAGAATCTCTTGCCCCATTCTCTGCAACCCAGGTCAAAATTTGTTTCTTTCTCTAAGCCCATTTCGCTCACCCTTAAAAAACCCTCTCCTCAGTCGCTCCGATCGTCTCTCCCAATTCCTTCGAATTGGTTCTCCCATCTCCAACATGGACTGGCCGCGCTGGCGATCTCTCTGGCGTTGAATTTCTCCCCATTGTTGGCCGGCGGTGGCAATGCCCTGGCGTCCGAATTCGATGTGCTCAGCGACGGGCCGCCGAAGGAGTCGCATCTGGTGGACGACGCCGGAGTTCTCAGCCGAGTCACGAAGTCGGATTTGAAGAGGCTGCTCTCGGATTTGGAGTCCAGGAAGAATTTCCACATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGATGGGAACAACAAAGGCATAGTTGTTCTTGTCACCAGCCAGAAGGAAGGAGCCATTACTGGTGGCCCTGCCTTTATCCAAGCAGTTGGAGAAAACATCCTTGATGCCACAGTAACAGAGAACCTCCCAGTGTTAGCTACTGATGAAAAGTATAATGAGGCGATATATAGCAGCGCGAAGCGGCTAGTCGCTGCCATTGATGGACTTCCAGATCCTGGTGGTCCGTCGTTTAAGGACAATAAGCGCGAATCTAACTTCAAAACAAGGGAAGAGACAGAGGAGAAAAGAGGACAGTTTTCTCTTGTAGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTCTCCAAGAAG

Protein sequence

METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSLPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK

Homology

[Close]

BLAST of MS007349 vs. NCBI nr
Match: XP_022150734.1 (UPF0603 protein At1g54780, chloroplastic [Momordica charantia])

HSP 1 Score: 569.3 bits (1466), Expect = 1.9e-158
Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL
Sbjct: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL
Sbjct: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           GLPD GGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GLPDAGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 298

[Close]

BLAST of MS007349 vs. NCBI nr
Match: XP_022946287.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata] >KAG6599269.1 UPF0603 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 521.9 bits (1343), Expect = 3.5e-144
Identity = 274/298 (91.95%), Postives = 284/298 (95.30%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           METILSPH  +LSPLL+PK SS KNL P+S QPR  FVSFS PIS +LK PSP+SLRSSL
Sbjct: 1   METILSPH--TLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSL 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           P+PSNWFSHLQHGLAALAISLALNFSPLLA   NALASEFDVL+DGPPKESHLVDDAGVL
Sbjct: 61  PVPSNWFSHLQHGLAALAISLALNFSPLLA-THNALASEFDVLNDGPPKESHLVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLL+DLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           GLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 295

[Close]

BLAST of MS007349 vs. NCBI nr
Match: XP_008455096.1 (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo] >KAA0063677.1 UPF0603 protein [Cucumis melo var. makuwa] >TYK18350.1 UPF0603 protein [Cucumis melo var. makuwa])

HSP 1 Score: 515.4 bits (1326), Expect = 3.3e-142
Identity = 274/299 (91.64%), Postives = 285/299 (95.32%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPS-PQSLRSS 60
           METILSPH  SLSPLL+PK SSSKNL  +S QPRS  VS SKPISL+LK PS P+SLRSS
Sbjct: 1   METILSPH--SLSPLLNPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSS 60

Query: 61  LPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGV 120
           LP+PS WFSHLQHGLAA+AISLALNFSPLLA G NALASEFDVL+DGPPKE+H+VDDAGV
Sbjct: 61  LPVPSTWFSHLQHGLAAVAISLALNFSPLLA-GHNALASEFDVLNDGPPKETHVVDDAGV 120

Query: 121 LSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180
           LSRVTKSDLKRLL+DLE+RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG
Sbjct: 121 LSRVTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240

Query: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of MS007349 vs. NCBI nr
Match: XP_022999120.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 513.5 bits (1321), Expect = 1.3e-141
Identity = 273/302 (90.40%), Postives = 283/302 (93.71%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQ----SL 60
           METILSPH  +LSPLL+PK SS KNL P+S QPR  FVSFS PIS +LK PSP+    SL
Sbjct: 49  METILSPH--TLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKTPSPKSLRSSL 108

Query: 61  RSSLPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDD 120
           RSSLP+PSNWFSHLQHGLAALAISLALNFSPLLA   NALASEFDVL+DGPPKESHLVDD
Sbjct: 109 RSSLPVPSNWFSHLQHGLAALAISLALNFSPLLA-THNALASEFDVLNDGPPKESHLVDD 168

Query: 121 AGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 180
           AGVLSRVTKSDLKRLL+DLE RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN
Sbjct: 169 AGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 228

Query: 181 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 240
           NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV
Sbjct: 229 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 288

Query: 241 AAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 299
           AAIDGLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS
Sbjct: 289 AAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 347

[Close]

BLAST of MS007349 vs. NCBI nr
Match: XP_023547269.1 (UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.7 bits (1319), Expect = 2.1e-141
Identity = 273/302 (90.40%), Postives = 283/302 (93.71%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQ----SL 60
           METILSPH  +LSPLL+PK SS KNL P+S QPR  FVSFS PIS +LK  SP+    SL
Sbjct: 1   METILSPH--TLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNHSPKSLRSSL 60

Query: 61  RSSLPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDD 120
           RSSLP+PSNWFSHLQHGLAALAISLALNFSPLLA   NALASEFDVL+DGPPKESHLVDD
Sbjct: 61  RSSLPVPSNWFSHLQHGLAALAISLALNFSPLLA-THNALASEFDVLNDGPPKESHLVDD 120

Query: 121 AGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 180
           AGVLSRVTKSDLKRLL+DLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN
Sbjct: 121 AGVLSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 180

Query: 181 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 240
           NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV
Sbjct: 181 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 240

Query: 241 AAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 299
           AAIDGLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS
Sbjct: 241 AAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 299

[Close]

BLAST of MS007349 vs. ExPASy Swiss-Prot
Match: Q9ZVL6 (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.5e-110
Identity = 214/298 (71.81%), Postives = 247/298 (82.89%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           MET+LSP   +LSP L+PK  S      H  +P S  +S SKP   T   P   S R + 
Sbjct: 1   METLLSPR--ALSPPLNPKPLSL-----HQTKPTSHSLSLSKP--TTFSGPKHLSTRFTK 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           P   NW    + GLAALA+SL L FSP+    G ALASEF++L+DGPPKE+++VDDAGVL
Sbjct: 61  PESRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLK+LLSDLE RK   ++F+TVRKLTSKADAFEYADQVLE+WYP++E+GNNKGI
Sbjct: 121 SRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVL+TSQKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAID
Sbjct: 181 VVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           G PDPGGP+ KD+KRESNFKT+EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 GQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

[Close]

BLAST of MS007349 vs. ExPASy Swiss-Prot
Match: A2Y4G9 (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-105
Identity = 211/307 (68.73%), Postives = 250/307 (81.43%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPK---ASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLR 60
           MET+LSP +L LSPL   K   AS + +    S  P    VS     +L  ++P PQ++ 
Sbjct: 1   METLLSPSTL-LSPLRGSKKKPASPAASASSSSSSPARSVVS----CALRRQQPPPQAVA 60

Query: 61  SSLPI------PSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKES 120
           +            +W + LQHGLAA A+SLA++ +P  A    A+ASEFDVL+ GPP+++
Sbjct: 61  AWRGDGGRGGGVGSWATFLQHGLAAAALSLAISMAPAPA---PAVASEFDVLNGGPPEDT 120

Query: 121 HLVDDAGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPT 180
           ++VDDAGVLSRVTKSD+KRL+ DLESRKN  I+F+TVRKLTSKADAFEYADQVLE+WYPT
Sbjct: 121 YVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPT 180

Query: 181 VEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSS 240
           VE+GNNKGIVVLVTSQKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++
Sbjct: 181 VEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTT 240

Query: 241 AKRLVAAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQY 299
           AKRL AAIDGLPDPGGP+FKDNKRESNFKT+EETEEKRGQF+LVVGGLLVIAFVVPMAQY
Sbjct: 241 AKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQY 299

[Close]

BLAST of MS007349 vs. ExPASy Swiss-Prot
Match: Q6ATY4 (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-105
Identity = 211/307 (68.73%), Postives = 250/307 (81.43%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPK---ASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLR 60
           MET+LSP +L LSPL   K   AS + +    S  P    VS     +L  ++P PQ++ 
Sbjct: 1   METLLSPSTL-LSPLRGSKKKPASPAASASSSSSSPARSVVS----CALRRQQPPPQAVA 60

Query: 61  SSLPI------PSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKES 120
           +            +W + LQHGLAA A+SLA++ +P  A    A+ASEFDVL+ GPP+++
Sbjct: 61  AWRGDGGRGGGVGSWATFLQHGLAAAALSLAISMAPAPA---PAVASEFDVLNGGPPEDT 120

Query: 121 HLVDDAGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPT 180
           ++VDDAGVLSRVTKSD+KRL+ DLESRKN  I+F+TVRKLTSKADAFEYADQVLE+WYPT
Sbjct: 121 YVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPT 180

Query: 181 VEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSS 240
           VE+GNNKGIVVLVTSQKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++
Sbjct: 181 VEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTT 240

Query: 241 AKRLVAAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQY 299
           AKRL AAIDGLPDPGGP+FKDNKRESNFKT+EETEEKRGQF+LVVGGLLVIAFVVPMAQY
Sbjct: 241 AKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQY 299

[Close]

BLAST of MS007349 vs. ExPASy TrEMBL
Match: A0A6J1DAY7 (UPF0603 protein At1g54780, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018793 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 9.4e-159
Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL
Sbjct: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL
Sbjct: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           GLPD GGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GLPDAGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 298

[Close]

BLAST of MS007349 vs. ExPASy TrEMBL
Match: A0A6J1G3B4 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450415 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.7e-144
Identity = 274/298 (91.95%), Postives = 284/298 (95.30%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           METILSPH  +LSPLL+PK SS KNL P+S QPR  FVSFS PIS +LK PSP+SLRSSL
Sbjct: 1   METILSPH--TLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSL 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           P+PSNWFSHLQHGLAALAISLALNFSPLLA   NALASEFDVL+DGPPKESHLVDDAGVL
Sbjct: 61  PVPSNWFSHLQHGLAALAISLALNFSPLLA-THNALASEFDVLNDGPPKESHLVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLL+DLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           GLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 295

[Close]

BLAST of MS007349 vs. ExPASy TrEMBL
Match: A0A5D3D492 (UPF0603 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00650 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.6e-142
Identity = 274/299 (91.64%), Postives = 285/299 (95.32%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPS-PQSLRSS 60
           METILSPH  SLSPLL+PK SSSKNL  +S QPRS  VS SKPISL+LK PS P+SLRSS
Sbjct: 1   METILSPH--SLSPLLNPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSS 60

Query: 61  LPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGV 120
           LP+PS WFSHLQHGLAA+AISLALNFSPLLA G NALASEFDVL+DGPPKE+H+VDDAGV
Sbjct: 61  LPVPSTWFSHLQHGLAAVAISLALNFSPLLA-GHNALASEFDVLNDGPPKETHVVDDAGV 120

Query: 121 LSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180
           LSRVTKSDLKRLL+DLE+RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG
Sbjct: 121 LSRVTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240

Query: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of MS007349 vs. ExPASy TrEMBL
Match: A0A1S3C0U8 (UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.6e-142
Identity = 274/299 (91.64%), Postives = 285/299 (95.32%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPS-PQSLRSS 60
           METILSPH  SLSPLL+PK SSSKNL  +S QPRS  VS SKPISL+LK PS P+SLRSS
Sbjct: 1   METILSPH--SLSPLLNPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSS 60

Query: 61  LPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGV 120
           LP+PS WFSHLQHGLAA+AISLALNFSPLLA G NALASEFDVL+DGPPKE+H+VDDAGV
Sbjct: 61  LPVPSTWFSHLQHGLAAVAISLALNFSPLLA-GHNALASEFDVLNDGPPKETHVVDDAGV 120

Query: 121 LSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180
           LSRVTKSDLKRLL+DLE+RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG
Sbjct: 121 LSRVTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240

Query: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of MS007349 vs. ExPASy TrEMBL
Match: A0A6J1KEE9 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493599 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 6.1e-142
Identity = 273/302 (90.40%), Postives = 283/302 (93.71%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQ----SL 60
           METILSPH  +LSPLL+PK SS KNL P+S QPR  FVSFS PIS +LK PSP+    SL
Sbjct: 49  METILSPH--TLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKTPSPKSLRSSL 108

Query: 61  RSSLPIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDD 120
           RSSLP+PSNWFSHLQHGLAALAISLALNFSPLLA   NALASEFDVL+DGPPKESHLVDD
Sbjct: 109 RSSLPVPSNWFSHLQHGLAALAISLALNFSPLLA-THNALASEFDVLNDGPPKESHLVDD 168

Query: 121 AGVLSRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 180
           AGVLSRVTKSDLKRLL+DLE RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN
Sbjct: 169 AGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGN 228

Query: 181 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 240
           NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV
Sbjct: 229 NKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLV 288

Query: 241 AAIDGLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 299
           AAIDGLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS
Sbjct: 289 AAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS 347

[Close]

BLAST of MS007349 vs. TAIR 10
Match: AT1G54780.1 (thylakoid lumen 18.3 kDa protein )

HSP 1 Score: 399.1 bits (1024), Expect = 3.2e-111
Identity = 214/298 (71.81%), Postives = 247/298 (82.89%), Query Frame = 0


Query: 1   METILSPHSLSLSPLLSPKASSSKNLLPHSLQPRSKFVSFSKPISLTLKKPSPQSLRSSL 60
           MET+LSP   +LSP L+PK  S      H  +P S  +S SKP   T   P   S R + 
Sbjct: 1   METLLSPR--ALSPPLNPKPLSL-----HQTKPTSHSLSLSKP--TTFSGPKHLSTRFTK 60

Query: 61  PIPSNWFSHLQHGLAALAISLALNFSPLLAGGGNALASEFDVLSDGPPKESHLVDDAGVL 120
           P   NW    + GLAALA+SL L FSP+    G ALASEF++L+DGPPKE+++VDDAGVL
Sbjct: 61  PESRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVL 120

Query: 121 SRVTKSDLKRLLSDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLK+LLSDLE RK   ++F+TVRKLTSKADAFEYADQVLE+WYP++E+GNNKGI
Sbjct: 121 SRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVL+TSQKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAID
Sbjct: 181 VVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299
           G PDPGGP+ KD+KRESNFKT+EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 GQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

The following BLAST results are available for this feature:

BLAST of MS007349 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150734.1	1.9e-158	99.66	UPF0603 protein At1g54780, chloroplastic [Momordica charantia]	[more]
XP_022946287.1	3.5e-144	91.95	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata] >KAG6599269.1...	[more]
XP_008455096.1	3.3e-142	91.64	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo] >KAA0063677.1...	[more]
XP_022999120.1	1.3e-141	90.40	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]	[more]
XP_023547269.1	2.1e-141	90.40	UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. ...	[more]

BLAST of MS007349 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVL6	4.5e-110	71.81	UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
A2Y4G9	2.0e-105	68.73	UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946...	[more]
Q6ATY4	2.0e-105	68.73	UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of MS007349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAY7	9.4e-159	99.66	UPF0603 protein At1g54780, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1G3B4	1.7e-144	91.95	UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3D492	1.6e-142	91.64	UPF0603 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0065...	[more]
A0A1S3C0U8	1.6e-142	91.64	UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349...	[more]
A0A6J1KEE9	6.1e-142	90.40	UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of MS007349 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54780.1	3.2e-111	71.81	thylakoid lumen 18.3 kDa protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007621	TPM domain	PFAM	PF04536	TPM_phosphatase	coord: 114..237 e-value: 4.3E-18 score: 65.7
None	No IPR available	GENE3D	3.10.310.50		coord: 96..248 e-value: 1.5E-28 score: 101.0
None	No IPR available	PANTHER	PTHR30373	UNCHARACTERIZED	coord: 1..298
None	No IPR available	PANTHER	PTHR30373:SF2	UPF0603 PROTEIN OS05G0401100, CHLOROPLASTIC	coord: 1..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007349.1	MS007349.1	mRNA