MS007230 (gene) Bitter gourd (TR) v1

Overview


Name	MS007230
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S23-1
Location	scaffold25: 1618991 .. 1620263 (+)
RNA-Seq Expression	MS007230
Synteny	MS007230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTAGACGTATCTTAGGATTTTCAGATGGTGAGGTAATGAGGTCAGATGCTACACCCTGTCCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTGGGAGGAGGACTTGCGTTCTGGATTCTCTGTAGATTACATTATGGTCTGTCAAGTATCTTTCTCAACTCATCTGGATTTAAATGCATATTCAAATTGGATGTTTTTCTTTTTCCCTGACCAACTTTCAGTGAACTCAAATGGAACTTTAATCAATAATTATTTTCTTGTAGATTCAATATATTTAGTTACTCCATATGAATGGAAGCCCATAGCCTTCTTTTGTAATTATTCATTAGGCCAATGTTCTTCTAGATTGGAGCATTTTCTTGTACGTTAGCTTTTGATTTGGCTTCTTTTTTGGGCTGCCGTTTTTGTTTGTCCGTATTTGTTGGGTTTTTCTTGGCCTTTTTGTATACTCTCATTTTTTCAGCTTGGTTTCAATTCTAAATCTTTTCTAAACATATGTAGAGTTTGATCAGGTATCAGGATTAACTGAACTAATGTGGTAGGGTATAGAAAGATAGATGATGGTTTGTTTAGAAAAAATGATTGATGATGAATTATATCGATGTTTGGTTTTACACTTCTATATTCTTAAACGTGTTTTTAATTGTTTCCGTAGTATTTTGTAAATGTTTTCTCACGAAGCACTTTGGTGTCTTTTACCTTTTCTAAAAGTAATTTTCTGTTATCCTCGAACTAACATAATGATTTTGAATGGAAGGTACTTTAGCCATAGCAAAATTGTTTTTGGCTGTACTAAGAGTAAGAGTACCCCAACCATAGCCTACATATGATATTTCTTCTCCCACTGCCCTTTTGTGATTGACAGTTGGATTTAGTTCAAGCAAATTCAAACACCTTTTCTTGTTTCTCTTTTTGATAGAAAACAAGAACAACTTTGATTGAATAAAAAATAATATTGAAGTTTAGATCCAAACCCAATCCAAAGCATAAGTTGTGGTGGTGCTACAGCCTTGTCTATCTTCTTCCACCTTTTCCTTTTACAGTGGATTTTTCCTGTGGGATTTTAGTATCATACTTAAGCCTGTGAGATTCTGGATTCTGTTTTGTGACAGGTCCAAGAATCACAGTACCTAGGAGTCTCCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTTCGGTTATTCAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGATAAACGGAAAGTTGTAAGG

mRNA sequence

ATGGCACTTAGACGTATCTTAGGATTTTCAGATGGTGAGGTAATGAGGTCAGATGCTACACCCTGTCCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTGGGAGGAGGACTTGCGTTCTGGATTCTCTGTAGATTACATTATGGTCCAAGAATCACAGTACCTAGGAGTCTCCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTTCGGTTATTCAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGATAAACGGAAAGTTGTAAGG

Coding sequence (CDS)

ATGGCACTTAGACGTATCTTAGGATTTTCAGATGGTGAGGTAATGAGGTCAGATGCTACACCCTGTCCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTGGGAGGAGGACTTGCGTTCTGGATTCTCTGTAGATTACATTATGGTCCAAGAATCACAGTACCTAGGAGTCTCCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTTCGGTTATTCAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGATAAACGGAAAGTTGTAAGG

Protein sequence

MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR

Homology

[Close]

BLAST of MS007230 vs. NCBI nr
Match: XP_022156333.1 (uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156335.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156336.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156337.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156338.1 uncharacterized protein LOC111023254 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 6.4e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

[Close]

BLAST of MS007230 vs. NCBI nr
Match: XP_038889141.1 (uncharacterized protein LOC120079031 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR LGFSDGEVMRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFLGFSDGEVMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDKRKVV+
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVK 99

[Close]

BLAST of MS007230 vs. NCBI nr
Match: XP_022969628.1 (uncharacterized protein LOC111468599 [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 8.1e-45
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of MS007230 vs. NCBI nr
Match: XP_023538321.1 (uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDG++MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGDLMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of MS007230 vs. NCBI nr
Match: XP_022937466.1 (uncharacterized protein LOC111443868 [Cucurbita moschata] >KAG7020841.1 hypothetical protein SDJN02_17529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.4e-44
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

[Close]

BLAST of MS007230 vs. ExPASy TrEMBL
Match: A0A6J1DQC3 (uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023254 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

[Close]

BLAST of MS007230 vs. ExPASy TrEMBL
Match: A0A6J1I1J3 (uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.9e-45
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of MS007230 vs. ExPASy TrEMBL
Match: A0A6J1FAF1 (uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC111443868 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

[Close]

BLAST of MS007230 vs. ExPASy TrEMBL
Match: A0A1S3BWM4 (uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR+LGFSDGE+MRSDA PC QLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD+ K+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGKL 97

[Close]

BLAST of MS007230 vs. ExPASy TrEMBL
Match: A0A5D3BBN9 (40S ribosomal protein S23-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00620 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR+LGFSDGE+MRSDA PC QLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD+ K+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGKL 97

[Close]

BLAST of MS007230 vs. TAIR 10
Match: AT1G57540.1 (unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-39
Identity = 72/96 (75.00%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDA PC +LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

[Close]

BLAST of MS007230 vs. TAIR 10
Match: AT1G57540.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-39
Identity = 72/96 (75.00%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDA PC +LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

[Close]

BLAST of MS007230 vs. TAIR 10
Match: AT1G57540.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-39
Identity = 72/96 (75.00%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDA PC +LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

The following BLAST results are available for this feature:

BLAST of MS007230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156333.1	6.4e-50	100.00	uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncha...	[more]
XP_038889141.1	5.1e-47	94.95	uncharacterized protein LOC120079031 [Benincasa hispida]	[more]
XP_022969628.1	8.1e-45	90.91	uncharacterized protein LOC111468599 [Cucurbita maxima]	[more]
XP_023538321.1	1.8e-44	89.90	uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]	[more]
XP_022937466.1	2.4e-44	89.90	uncharacterized protein LOC111443868 [Cucurbita moschata] >KAG7020841.1 hypothet...	[more]

BLAST of MS007230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQC3	3.1e-50	100.00	uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1I1J3	3.9e-45	90.91	uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599...	[more]
A0A6J1FAF1	1.1e-44	89.90	uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC1114438...	[more]
A0A1S3BWM4	1.8e-42	86.60	uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=...	[more]
A0A5D3BBN9	1.8e-42	86.60	40S ribosomal protein S23-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of MS007230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57540.1	1.9e-39	75.00	unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bac...	[more]
AT1G57540.2	1.9e-39	75.00	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT1G57540.3	1.9e-39	75.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36331	40S RIBOSOMAL PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007230.1	MS007230.1	mRNA