MS006827 (gene) Bitter gourd (TR) v1

Overview


Name	MS006827
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold60: 928175 .. 928396 (+)
RNA-Seq Expression	MS006827
Synteny	MS006827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGATTGACTCTTGGGGTGATCCTTCTGCTTGTGCTGATCAGCTCGGCCATGGTAACCGAAGGGGCGAAGCGTATGAGTCTCCGACGTCTGGCTGAGAAACCCGAGCCGCGGCTGCGGGGTAATGAGAATGAAAGGGCCAAAAGTAGGCGCCCTGATAGTGAAAGTGGTGGATACAATCACCATGGGTGTCCCAGAAGAGATGTGGATTGCTGGAGT

mRNA sequence

ATGAGAAGATTGACTCTTGGGGTGATCCTTCTGCTTGTGCTGATCAGCTCGGCCATGGTAACCGAAGGGGCGAAGCGTATGAGTCTCCGACGTCTGGCTGAGAAACCCGAGCCGCGGCTGCGGGGTAATGAGAATGAAAGGGCCAAAAGTAGGCGCCCTGATAGTGAAAGTGGTGGATACAATCACCATGGGTGTCCCAGAAGAGATGTGGATTGCTGGAGT

Coding sequence (CDS)

ATGAGAAGATTGACTCTTGGGGTGATCCTTCTGCTTGTGCTGATCAGCTCGGCCATGGTAACCGAAGGGGCGAAGCGTATGAGTCTCCGACGTCTGGCTGAGAAACCCGAGCCGCGGCTGCGGGGTAATGAGAATGAAAGGGCCAAAAGTAGGCGCCCTGATAGTGAAAGTGGTGGATACAATCACCATGGGTGTCCCAGAAGAGATGTGGATTGCTGGAGT

Protein sequence

MRRLTLGVILLLVLISSAMVTEGAKRMSLRRLAEKPEPRLRGNENERAKSRRPDSESGGYNHHGCPRRDVDCWS

Homology

[Close]

BLAST of MS006827 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_022834 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MRRLTLGVILLLVLISSAMVTEGAKRMSLRRLAEKPEPRLRG-NENERAKSRRPDSESGG 60
          MRRLTL  IL+LVLI+S M+ EG    S RRL +  + R R  NENE+AK+RRP ++SG 
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRP-NDSGE 60

Query: 61 YNHHGCPRRDVDCWS 75
          YNHHGC RRDVDCWS
Sbjct: 61 YNHHGCLRRDVDCWS 74

[Close]

BLAST of MS006827 vs. ExPASy TrEMBL
Match: A0A0A0LV16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MRRLTLGVILLLVLISSAMVTEGAKRMSLRRLAEKPEPRLRG-NENERAKSRRPDSESGG 60
          MRRLTL  IL+LVLI+S M+ EG    S RRL +  + R R  NENE+AK+RRP ++SG 
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRP-NDSGE 60

Query: 61 YNHHGCPRRDVDCWS 75
          YNHHGC RRDVDCWS
Sbjct: 61 YNHHGCLRRDVDCWS 74

The following BLAST results are available for this feature:

BLAST of MS006827 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	3.4e-11	62.67	hypothetical protein Csa_022834 [Cucumis sativus]	[more]

BLAST of MS006827 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16	1.6e-11	62.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of MS006827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006827.1	MS006827.1	mRNA