MS006749 (gene) Bitter gourd (TR) v1

Overview


Name	MS006749
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	alpha/beta-Hydrolases superfamily protein
Location	scaffold60: 7408 .. 7638 (-)
RNA-Seq Expression	MS006749
Synteny	MS006749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACGGGAATAGGAATAGGAGTAGCATTTGCAGCGGTTGGTGTTGGATGGGTTTATAAAGGACTCAAACCTCCACCTCCAAAGGCATATGCAGTGAGTTCCCCAAGAGTAAAGCTGAGTGATGGGAGGCATTTGGCCTACAAAGAAGTTGGAGTTCCTAAGGAAGAGGCTCAATACAAGATCATTGTTTCTCATGGCTATGATGACTCCAAAGATATGCACTTTCCT

mRNA sequence

ATGATGACGGGAATAGGAATAGGAGTAGCATTTGCAGCGGTTGGTGTTGGATGGGTTTATAAAGGACTCAAACCTCCACCTCCAAAGGCATATGCAGTGAGTTCCCCAAGAGTAAAGCTGAGTGATGGGAGGCATTTGGCCTACAAAGAAGTTGGAGTTCCTAAGGAAGAGGCTCAATACAAGATCATTGTTTCTCATGGCTATGATGACTCCAAAGATATGCACTTTCCT

Coding sequence (CDS)

ATGATGACGGGAATAGGAATAGGAGTAGCATTTGCAGCGGTTGGTGTTGGATGGGTTTATAAAGGACTCAAACCTCCACCTCCAAAGGCATATGCAGTGAGTTCCCCAAGAGTAAAGCTGAGTGATGGGAGGCATTTGGCCTACAAAGAAGTTGGAGTTCCTAAGGAAGAGGCTCAATACAAGATCATTGTTTCTCATGGCTATGATGACTCCAAAGATATGCACTTTCCT

Protein sequence

MMTGIGIGVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQYKIIVSHGYDDSKDMHFP

Homology

[Close]

BLAST of MS006749 vs. NCBI nr
Match: XP_022142422.1 (uncharacterized protein LOC111012560 [Momordica charantia] >XP_022142423.1 uncharacterized protein LOC111012560 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MMTGIGIGVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY 60
          MMTGIG+GVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY
Sbjct: 1  MMTGIGVGVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY 60

Query: 61 KIIVSHGYDDSKDMHFP 78
          KIIVSHGYDDSKDMHFP
Sbjct: 61 KIIVSHGYDDSKDMHFP 77

[Close]

BLAST of MS006749 vs. NCBI nr
Match: XP_022142537.1 (uncharacterized protein LOC111012627 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7   IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
           IG AF    +GWVYK LKPP PK         V+SPRVKLSDGRHLAY+EVGVPKEEAQY
Sbjct: 49  IGAAFVVGLLGWVYKALKPPSPKVCGSANGPPVTSPRVKLSDGRHLAYREVGVPKEEAQY 108

Query: 67  KIIVSHGYDDSKDMHFP 78
           KII+SHGY++ KDM+ P
Sbjct: 109 KIIISHGYNNCKDMYLP 125

[Close]

BLAST of MS006749 vs. NCBI nr
Match: XP_022142538.1 (uncharacterized protein LOC111012628 [Momordica charantia] >XP_022142540.1 uncharacterized protein LOC111012628 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQY
Sbjct: 5  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQY 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KII+ HGY+ SKDM+ P
Sbjct: 65 KIIMCHGYNSSKDMYLP 81

[Close]

BLAST of MS006749 vs. NCBI nr
Match: XP_022970316.1 (uncharacterized protein LOC111469316 isoform X1 [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7   IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
           IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQ 
Sbjct: 73  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQC 132

Query: 67  KIIVSHGYDDSKDMHFP 78
           KII+SHGY+ SKDM+ P
Sbjct: 133 KIIMSHGYNSSKDMYLP 149

[Close]

BLAST of MS006749 vs. NCBI nr
Match: XP_022970317.1 (uncharacterized protein LOC111469316 isoform X2 [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQ 
Sbjct: 5  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQC 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KII+SHGY+ SKDM+ P
Sbjct: 65 KIIMSHGYNSSKDMYLP 81

[Close]

BLAST of MS006749 vs. ExPASy TrEMBL
Match: A0A6J1CN82 (uncharacterized protein LOC111012560 OS=Momordica charantia OX=3673 GN=LOC111012560 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MMTGIGIGVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY 60
          MMTGIG+GVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY
Sbjct: 1  MMTGIGVGVAFAAVGVGWVYKGLKPPPPKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQY 60

Query: 61 KIIVSHGYDDSKDMHFP 78
          KIIVSHGYDDSKDMHFP
Sbjct: 61 KIIVSHGYDDSKDMHFP 77

[Close]

BLAST of MS006749 vs. ExPASy TrEMBL
Match: A0A6J1CN23 (uncharacterized protein LOC111012627 OS=Momordica charantia OX=3673 GN=LOC111012627 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7   IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
           IG AF    +GWVYK LKPP PK         V+SPRVKLSDGRHLAY+EVGVPKEEAQY
Sbjct: 49  IGAAFVVGLLGWVYKALKPPSPKVCGSANGPPVTSPRVKLSDGRHLAYREVGVPKEEAQY 108

Query: 67  KIIVSHGYDDSKDMHFP 78
           KII+SHGY++ KDM+ P
Sbjct: 109 KIIISHGYNNCKDMYLP 125

[Close]

BLAST of MS006749 vs. ExPASy TrEMBL
Match: A0A6J1CL81 (uncharacterized protein LOC111012628 OS=Momordica charantia OX=3673 GN=LOC111012628 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQY
Sbjct: 5  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQY 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KII+ HGY+ SKDM+ P
Sbjct: 65 KIIMCHGYNSSKDMYLP 81

[Close]

BLAST of MS006749 vs. ExPASy TrEMBL
Match: A0A6J1I094 (uncharacterized protein LOC111469316 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469316 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7   IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
           IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQ 
Sbjct: 73  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQC 132

Query: 67  KIIVSHGYDDSKDMHFP 78
           KII+SHGY+ SKDM+ P
Sbjct: 133 KIIMSHGYNSSKDMYLP 149

[Close]

BLAST of MS006749 vs. ExPASy TrEMBL
Match: A0A6J1HYS2 (uncharacterized protein LOC111469316 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469316 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          IGVAFA   +GWVY+ LKP PPK         V+SPRVKL+DGRHLAY+E GVPKEEAQ 
Sbjct: 5  IGVAFAVGLLGWVYQALKPSPPKICGSANGPPVTSPRVKLNDGRHLAYREFGVPKEEAQC 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KII+SHGY+ SKDM+ P
Sbjct: 65 KIIMSHGYNSSKDMYLP 81

[Close]

BLAST of MS006749 vs. TAIR 10
Match: AT5G22460.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          + VA     +G++Y+  KPPPP+         V+SPR+KLSDGR+LAY+E GV ++ A Y
Sbjct: 5  VTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNANY 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KIIV HG++ SKD  FP
Sbjct: 65 KIIVVHGFNSSKDTEFP 81

[Close]

BLAST of MS006749 vs. TAIR 10
Match: AT5G22460.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 7  IGVAFAAVGVGWVYKGLKPPPPKAYA------VSSPRVKLSDGRHLAYKEVGVPKEEAQY 66
          + VA     +G++Y+  KPPPP+         V+SPR+KLSDGR+LAY+E GV ++ A Y
Sbjct: 5  VTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNANY 64

Query: 67 KIIVSHGYDDSKDMHFP 78
          KIIV HG++ SKD  FP
Sbjct: 65 KIIVVHGFNSSKDTEFP 81

[Close]

BLAST of MS006749 vs. TAIR 10
Match: AT3G48410.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 9   VAFAAVGVGWVYKGLKPPP------PKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQYKI 68
           V F  V + WVY+ ++PPP      P    V+SPR+KL DGRHLAY E G+P++EA++KI
Sbjct: 39  VTFVGV-LAWVYQTIQPPPAKIVGSPGGPTVTSPRIKLRDGRHLAYTEFGIPRDEAKFKI 98

Query: 69  IVSHGYDD-SKDMHF 77
           I  HG+D   +D HF
Sbjct: 99  INIHGFDSCMRDSHF 112

[Close]

BLAST of MS006749 vs. TAIR 10
Match: AT3G03230.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 18 WVYKGLKPPP----PKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQYKIIVSHGYDDSKD 75
          +VYK + PPP    P+  +  SPR+KL+DGRHLAYKE+G PK++A+ KII+ HG  +SKD
Sbjct: 14 YVYKSITPPPPIPLPENVSEISPRIKLNDGRHLAYKELGFPKDKAKNKIIIVHGNGNSKD 73

[Close]

BLAST of MS006749 vs. TAIR 10
Match: AT3G03240.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 18 WVYKGLKPPP----PKAYAVSSPRVKLSDGRHLAYKEVGVPKEEAQYKIIVSHGYDDSK 73
          +VYK +KPPP    P+  +  SPR+KL+DGR+LAYKE+G PK++A+ KII+ HG+  SK
Sbjct: 14 YVYKSVKPPPPIPLPENVSEISPRIKLNDGRYLAYKELGFPKDKAKNKIIILHGFGSSK 72

The following BLAST results are available for this feature:

BLAST of MS006749 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142422.1	5.4e-36	98.70	uncharacterized protein LOC111012560 [Momordica charantia] >XP_022142423.1 uncha...	[more]
XP_022142537.1	1.6e-19	67.53	uncharacterized protein LOC111012627 [Momordica charantia]	[more]
XP_022142538.1	1.3e-18	66.23	uncharacterized protein LOC111012628 [Momordica charantia] >XP_022142540.1 uncha...	[more]
XP_022970316.1	3.9e-18	66.23	uncharacterized protein LOC111469316 isoform X1 [Cucurbita maxima]	[more]
XP_022970317.1	3.9e-18	66.23	uncharacterized protein LOC111469316 isoform X2 [Cucurbita maxima]	[more]

BLAST of MS006749 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN82	2.6e-36	98.70	uncharacterized protein LOC111012560 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1CN23	7.6e-20	67.53	uncharacterized protein LOC111012627 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1CL81	6.4e-19	66.23	uncharacterized protein LOC111012628 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1I094	1.9e-18	66.23	uncharacterized protein LOC111469316 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HYS2	1.9e-18	66.23	uncharacterized protein LOC111469316 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS006749 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22460.1	5.0e-16	49.35	alpha/beta-Hydrolases superfamily protein	[more]
AT5G22460.2	5.0e-16	49.35	alpha/beta-Hydrolases superfamily protein	[more]
AT3G48410.1	1.0e-13	49.33	alpha/beta-Hydrolases superfamily protein	[more]
AT3G03230.1	5.2e-13	54.10	alpha/beta-Hydrolases superfamily protein	[more]
AT3G03240.1	1.5e-12	54.24	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45763:SF21	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 7..77
None	No IPR available	PANTHER	PTHR45763	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006749.1	MS006749.1	mRNA