MS006744 (gene) Bitter gourd (TR) v1

Overview


Name	MS006744
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Leucine-rich repeat family protein / extensin family protein
Location	scaffold379: 279119 .. 279442 (-)
RNA-Seq Expression	MS006744
Synteny	MS006744

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCCTCCCTCCAAGAACTCGATCTCAGCAACAACTATTTCTCCGGCCGTTTCCTTACGTTACTCTTTACATTTAAAAGCTCATCTATTTGGACCTCAGATACAATTCCTTCTCTGGGCCAATCCCAAAAGGTTCGTTCTTCCAAGAATTTGGACCCCATTCTCATCAAGAATAACCAATTCAACGGCGAAATCCCACAAAACTTCAGGAGTTCACCGGTTTCCATGTTAAATCTGGCAAATAATCGGTTCACCTGTGCGATTCCGACGAGTTTTGGGTTCATGTATCTGAGATTGAAGGAGATTCTGTTTCTGAATTACCAA

mRNA sequence

CTCCCCTCCCTCCAAGAACTCGATCTCAGCAACAACTATTTCTCCGGCCGTTTCCTTACGTTACTCTTTACAAAGCTCATCTATTTGGACCTCAGATACAATTCCTTCTCTGGGCCAATCCCAAAAGGTTCGTTCAAGAATTTGGACCCCATTCTCATCAAGAATAACCAATTCAACGGCGAAATCCCACAAAACTTCAGGAGTTCACCGGTTTCCATGTTAAATCTGGCAAATAATCGGTTCACCTGTGCGATTCCGACGAGTTTTGGGTTCATGTATCTGAGATTGAAGGAGATTCTGTTTCTGAATTACCAA

Coding sequence (CDS)

CTCCCCTCCCTCCAAGAACTCGATCTCAGCAACAACTATTTCTCCGGCCGTTTCCTTACGTTACTCTTTACAAAGCTCATCTATTTGGACCTCAGATACAATTCCTTCTCTGGGCCAATCCCAAAAGGTTCGTTCAAGAATTTGGACCCCATTCTCATCAAGAATAACCAATTCAACGGCGAAATCCCACAAAACTTCAGGAGTTCACCGGTTTCCATGTTAAATCTGGCAAATAATCGGTTCACCTGTGCGATTCCGACGAGTTTTGGGTTCATGTATCTGAGATTGAAGGAGATTCTGTTTCTGAATTACCAA

Protein sequence

LPSLQELDLSNNYFSGRFLTLLFTKLIYLDLRYNSFSGPIPKGSFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ

Homology

[Close]

BLAST of MS006744 vs. NCBI nr
Match: XP_022154688.1 (leucine-rich repeat extensin-like protein 4 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-31
Identity = 78/108 (72.22%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQ 60
           LPSLQELDLSNN FSG F  +TL   +LIYLDLR+NSFSGPIP+   F+ LD ILI NNQ
Sbjct: 148 LPSLQELDLSNNNFSGPFPYVTLYIRRLIYLDLRFNSFSGPIPEALFFQELDAILINNNQ 207

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+GEIPQN  +SP S++NLANNRFT AIP SFGFM  RLKEILFLN Q
Sbjct: 208 FDGEIPQNLGNSPASVINLANNRFTGAIPASFGFMGPRLKEILFLNNQ 255

[Close]

BLAST of MS006744 vs. NCBI nr
Match: XP_021597937.1 (leucine-rich repeat extensin-like protein 4 [Manihot esculenta] >OAY27188.1 hypothetical protein MANES_16G107000v8 [Manihot esculenta])

HSP 1 Score: 134.4 bits (337), Expect = 5.6e-28
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQ
Sbjct: 162 LSSLQELDLSNNNFSGRFPVVTLYIPNLIYLDLRFNSFSGPIPEDLFNKRLDAIFLNNNQ 221

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+ +IPQN  +SP S++NLANN+FT +IP SFG M  +LKEILFLN Q
Sbjct: 222 FSSQIPQNMGNSPASVINLANNKFTGSIPASFGMMSSKLKEILFLNNQ 269

[Close]

BLAST of MS006744 vs. NCBI nr
Match: XP_037493000.1 (leucine-rich repeat extensin-like protein 4 [Jatropha curcas])

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-28
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQ 60
           L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP   F   LD I + NNQ
Sbjct: 175 LTSLQELDLSNNQFSGRFPTVTLYIPNLIYLDLRFNSFSGPIPDDLFNLRLDAIFLNNNQ 234

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           FNG+IPQN  +SP S++NLANN+F+ ++P SFG M  +LKEILFLN Q
Sbjct: 235 FNGQIPQNLGNSPASVINLANNKFSGSLPASFGLMSSKLKEILFLNNQ 282

[Close]

BLAST of MS006744 vs. NCBI nr
Match: XP_021606597.1 (leucine-rich repeat extensin-like protein 4 [Manihot esculenta] >OAY53851.1 hypothetical protein MANES_03G028700v8 [Manihot esculenta])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSG F  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQ
Sbjct: 162 LTSLQELDLSNNQFSGPFPAITLYIPNLIYLDLRFNSFSGPIPEDLFNKRLDAIFLNNNQ 221

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+G+IPQN  +SP S++NLANN+ T  IP SFG M  RLKEILFLN Q
Sbjct: 222 FSGQIPQNLGNSPASVINLANNQLTGTIPASFGLMSSRLKEILFLNNQ 269

[Close]

BLAST of MS006744 vs. NCBI nr
Match: KAG7984157.1 (hypothetical protein I3843_04G144200 [Carya illinoinensis])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSG F  +TL    LIYLDLR+N+FSGP+P+  F KNLD I + NNQ
Sbjct: 160 LSSLQELDLSNNLFSGPFPVVTLYIPNLIYLDLRFNTFSGPLPEDLFNKNLDAIFLNNNQ 219

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F G++PQN  +SP S++NLANN+F+  IPTS GFM  +LKEILFLN Q
Sbjct: 220 FEGQLPQNLGNSPASVINLANNKFSGNIPTSLGFMGSKLKEILFLNNQ 267

[Close]

BLAST of MS006744 vs. ExPASy Swiss-Prot
Match: Q9LHF1 (Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=LRX4 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.4e-19
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F T++     L +LDLR+N F G +PK  F KNLD I I +N+
Sbjct: 169 LKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNR 228

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  E+P+NF  SPVS++ LANN F   IPTS   M   L EI+F+N
Sbjct: 229 FRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMN 273

[Close]

BLAST of MS006744 vs. ExPASy Swiss-Prot
Match: Q4PSE6 (Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=LRX7 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-18
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F  + +   KL YLDLRYN F G +P+  F K+LD + + +N+
Sbjct: 146 LSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNR 205

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  +IP N  +SPVS+L LA+NRF   IP SFG M   L EI+ ++
Sbjct: 206 FRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMD 251

[Close]

BLAST of MS006744 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-18
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F T  L    L +LDLR+N F G +PK  F K+LD I I +N+
Sbjct: 161 LKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNR 220

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  E+P+NF  SPVS++ LANNRF   +P+S   M   L EI+F+N
Sbjct: 221 FRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEM-KNLNEIIFMN 265

[Close]

BLAST of MS006744 vs. ExPASy Swiss-Prot
Match: Q9SN46 (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G F T  L    L +LDLR+N F GP+P+  F K+LD I I +N+
Sbjct: 173 LKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNR 232

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFL 103
           F  E+P N   SPVS++ +ANN F   IPTS G M   L+EI+F+
Sbjct: 233 FRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDM-RNLEEIIFM 276

[Close]

BLAST of MS006744 vs. ExPASy Swiss-Prot
Match: Q9LUI1 (Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=LRX6 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-14
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 4   LQELDLSNNYFSGRFLTLLFT--KLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQFNG 63
           L ELD+SNN  SG F +++F+   L +LD+R+N F G +P   F  NLD + I +N+F  
Sbjct: 149 LHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQF 208

Query: 64  EIPQNFRSSPVSMLNLANNRFT-CAIPTSFGFMYLRLKEILFLNYQ 106
            +P+N  +SPVS+L LANN      +P SF  M   L EI+  N Q
Sbjct: 209 RLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQ 254

[Close]

BLAST of MS006744 vs. ExPASy TrEMBL
Match: A0A6J1DKZ9 (leucine-rich repeat extensin-like protein 4 OS=Momordica charantia OX=3673 GN=LOC111021886 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 78/108 (72.22%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQ 60
           LPSLQELDLSNN FSG F  +TL   +LIYLDLR+NSFSGPIP+   F+ LD ILI NNQ
Sbjct: 148 LPSLQELDLSNNNFSGPFPYVTLYIRRLIYLDLRFNSFSGPIPEALFFQELDAILINNNQ 207

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+GEIPQN  +SP S++NLANNRFT AIP SFGFM  RLKEILFLN Q
Sbjct: 208 FDGEIPQNLGNSPASVINLANNRFTGAIPASFGFMGPRLKEILFLNNQ 255

[Close]

BLAST of MS006744 vs. ExPASy TrEMBL
Match: A0A2C9UAT0 (LRRNT_2 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G107000 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQ
Sbjct: 162 LSSLQELDLSNNNFSGRFPVVTLYIPNLIYLDLRFNSFSGPIPEDLFNKRLDAIFLNNNQ 221

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+ +IPQN  +SP S++NLANN+FT +IP SFG M  +LKEILFLN Q
Sbjct: 222 FSSQIPQNMGNSPASVINLANNKFTGSIPASFGMMSSKLKEILFLNNQ 269

[Close]

BLAST of MS006744 vs. ExPASy TrEMBL
Match: A0A2C9W430 (LRRNT_2 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G028700 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.9e-28
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSG F  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQ
Sbjct: 162 LTSLQELDLSNNQFSGPFPAITLYIPNLIYLDLRFNSFSGPIPEDLFNKRLDAIFLNNNQ 221

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+G+IPQN  +SP S++NLANN+ T  IP SFG M  RLKEILFLN Q
Sbjct: 222 FSGQIPQNLGNSPASVINLANNQLTGTIPASFGLMSSRLKEILFLNNQ 269

[Close]

BLAST of MS006744 vs. ExPASy TrEMBL
Match: A0A6A6K8L1 (LRRNT_2 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_038968 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN+FSG F  +TL    LIYLDLR+NSFSG IP+  F K LD I + NNQ
Sbjct: 106 LTSLQELDLSNNHFSGPFPAVTLYIPNLIYLDLRFNSFSGSIPEDLFDKRLDAIFLNNNQ 165

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F+G+IPQN  +SP S++NLANN+FT +IP SFG M  +LKEILFLN Q
Sbjct: 166 FSGQIPQNLGNSPASVINLANNKFTGSIPASFGLMSSKLKEILFLNNQ 213

[Close]

BLAST of MS006744 vs. ExPASy TrEMBL
Match: A0A2N9HSU9 (LRRNT_2 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42732 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSG F  +TL    LIYLDLR+N FSGP+P+  F K LD I + NNQ
Sbjct: 181 LLSLQELDLSNNLFSGSFPIVTLYIPNLIYLDLRFNKFSGPLPEDLFNKRLDAIFVNNNQ 240

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F G++PQN  +SP S++NLANN+F+  IPTSFGFM  +LKEILFLN Q
Sbjct: 241 FEGQLPQNLGNSPASVINLANNKFSGNIPTSFGFMGSKLKEILFLNNQ 288

[Close]

BLAST of MS006744 vs. TAIR 10
Match: AT2G19780.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN FSG F  +TL    L+YLDLR+N+F+G IP+  F K LD IL+ NNQ
Sbjct: 156 LDSLQELDLSNNRFSGSFPQVTLYIPNLVYLDLRFNNFTGSIPENLFNKQLDAILLNNNQ 215

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F GEIP N   S  S++NLANN+ +  IPTSFG    +LKE+LFLN Q
Sbjct: 216 FTGEIPGNLGYSTASVINLANNKLSGEIPTSFGITGSKLKEVLFLNNQ 263

[Close]

BLAST of MS006744 vs. TAIR 10
Match: AT4G29240.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 118.2 bits (295), Expect = 3.9e-27
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L SLQELDLSNN  SG F  +TL    L+YLDLR+NS +G IP+  F K LD IL+ NNQ
Sbjct: 161 LASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRFNSLTGFIPEELFNKRLDAILLNNNQ 220

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ 106
           F GEIP+N  +SP S++NLANNRF+  IPTSFG    R+KE+L LN Q
Sbjct: 221 FVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSRVKEVLLLNNQ 268

[Close]

BLAST of MS006744 vs. TAIR 10
Match: AT3G24480.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-20
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F T++     L +LDLR+N F G +PK  F KNLD I I +N+
Sbjct: 169 LKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNR 228

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  E+P+NF  SPVS++ LANN F   IPTS   M   L EI+F+N
Sbjct: 229 FRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMN 273

[Close]

BLAST of MS006744 vs. TAIR 10
Match: AT5G25550.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F  + +   KL YLDLRYN F G +P+  F K+LD + + +N+
Sbjct: 146 LSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNR 205

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  +IP N  +SPVS+L LA+NRF   IP SFG M   L EI+ ++
Sbjct: 206 FRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMD 251

[Close]

BLAST of MS006744 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQ 60
           L  L ELDLSNN F+G+F T  L    L +LDLR+N F G +PK  F K+LD I I +N+
Sbjct: 161 LKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNR 220

Query: 61  FNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLN 104
           F  E+P+NF  SPVS++ LANNRF   +P+S   M   L EI+F+N
Sbjct: 221 FRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEM-KNLNEIIFMN 265

The following BLAST results are available for this feature:

BLAST of MS006744 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154688.1	3.2e-31	72.22	leucine-rich repeat extensin-like protein 4 [Momordica charantia]	[more]
XP_021597937.1	5.6e-28	65.74	leucine-rich repeat extensin-like protein 4 [Manihot esculenta] >OAY27188.1 hypo...	[more]
XP_037493000.1	7.3e-28	64.81	leucine-rich repeat extensin-like protein 4 [Jatropha curcas]	[more]
XP_021606597.1	1.6e-27	65.74	leucine-rich repeat extensin-like protein 4 [Manihot esculenta] >OAY53851.1 hypo...	[more]
KAG7984157.1	2.1e-27	63.89	hypothetical protein I3843_04G144200 [Carya illinoinensis]	[more]

BLAST of MS006744 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHF1	8.4e-19	51.89	Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q4PSE6	1.9e-18	49.06	Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9T0K5	3.2e-18	50.94	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9SN46	2.1e-17	50.48	Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LUI1	6.2e-14	43.40	Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of MS006744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKZ9	1.5e-31	72.22	leucine-rich repeat extensin-like protein 4 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A2C9UAT0	2.7e-28	65.74	LRRNT_2 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G10700...	[more]
A0A2C9W430	7.9e-28	65.74	LRRNT_2 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G02870...	[more]
A0A6A6K8L1	1.0e-27	64.81	LRRNT_2 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_038968 ...	[more]
A0A2N9HSU9	1.3e-27	63.89	LRRNT_2 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42732 ...	[more]

BLAST of MS006744 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19780.1	3.0e-27	59.26	Leucine-rich repeat (LRR) family protein	[more]
AT4G29240.1	3.9e-27	60.19	Leucine-rich repeat (LRR) family protein	[more]
AT3G24480.1	6.0e-20	51.89	Leucine-rich repeat (LRR) family protein	[more]
AT5G25550.1	1.3e-19	49.06	Leucine-rich repeat (LRR) family protein	[more]
AT4G13340.1	2.3e-19	50.94	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 25..48 e-value: 0.44 score: 11.3 coord: 3..16 e-value: 0.66 score: 10.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 45..100 e-value: 3.5E-6 score: 28.9 coord: 1..44 e-value: 1.1E-9 score: 40.2
None	No IPR available	PANTHER	PTHR32093:SF86	EXTENSIN-LIKE PROTEIN	coord: 2..105
None	No IPR available	PANTHER	PTHR32093	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	coord: 2..105
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006744.1	MS006744.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding