MS006741 (gene) Bitter gourd (TR) v1

Overview
NameMS006741
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionfasciclin-like arabinogalactan protein 12
Locationscaffold379: 196956 .. 198079 (+)
RNA-Seq ExpressionMS006741
SyntenyMS006741
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCATGAATCGCGTCTTCTCTCCCGCGATTTTCTCTCTTTTTCTCTTTCTCTTCTTCCGTTGCAGCTCGGGCCAGGCACCAGCCGAGGCCCCGGCGCCGCCTCCGCCGACAAATATCACAAAAATACTGGAAAAGGCTGGCCAGTTCACGATTCTGATCAGACTCTTGAAGAGCACTCAAGTGGCGAATCAAATTAACAGTCAGCTTAATGACTCCAATTCTGAACTCACCATTTTCGCCCCCACTGATAATGCTTTCTCTAGTCTCAAATCGGGTACCTCCCTTTAATCTTACTCTCTCCTCCATGGTCTTTTTTATTCTTATCAAGTGAGCTATGCTGCCAATCTAAACATAGTTCAACTGGTATATATTTCGGACCAAAAAATGGTGTGTCCGAACTCTATTCTCATTGAACTAAAAAAAGAATTTATCAAAGTTATGAGTTTATTATCAACCTGAACTTAACTCAACTGATTAATATATGTTTTCGACAAAAATATCGTGAGTTCGAATCTCTACTCCCGTATATTGTACTAAAAGAAACTAAGAATGTATATAAATGATATAGTATATTAGTAATATTTCTTTTCTGAGTACACTAATAGACTTACGTTAGAAATATATGAAATGAATCAAGTTACGTTAAGTTTTCAAAGAAAAAGATTGAGCTATTATTCGTGATTTAAATACTCTGTAACGAGTCAAGCTTAGTAACTATAATTGATATTGTTTATAACCAAAGAAGTCATGAATTCCAATAACTCAGGTTGTACTCTCGGACTCAAAAACCATTTGAATGATTTAATAGATAAAATGAGAATTTTGAAATGTGGGCAGGCACTCTAAATTCGTTGAACGACGAACAAAAAGTAGAGCTTCTCCAATTCCACATGATTCCCACGTTCCTTTCGCTCTCAAACTTCCAAACTGTGAGCAATCCGTTGAGAACTCAGGCCGGCGACGCCTACGAGTTCCCTCTCAACGTCACCACCTCCGGCAACTCCGTCAACGTTTCTTCCGGCCTCGTCAACACCTCCATCTCCGGCACCGTCTACTCCGACAACCAACTCGCCGTCTACCAGCTCGACTCCGTCCTCAGGCCCATCGGCATCTTCCAGCCCCGC

mRNA sequence

ATCATGAATCGCGTCTTCTCTCCCGCGATTTTCTCTCTTTTTCTCTTTCTCTTCTTCCGTTGCAGCTCGGGCCAGGCACCAGCCGAGGCCCCGGCGCCGCCTCCGCCGACAAATATCACAAAAATACTGGAAAAGGCTGGCCAGTTCACGATTCTGATCAGACTCTTGAAGAGCACTCAAGTGGCGAATCAAATTAACAGTCAGCTTAATGACTCCAATTCTGAACTCACCATTTTCGCCCCCACTGATAATGCTTTCTCTAGTCTCAAATCGGGCACTCTAAATTCGTTGAACGACGAACAAAAAGTAGAGCTTCTCCAATTCCACATGATTCCCACGTTCCTTTCGCTCTCAAACTTCCAAACTGTGAGCAATCCGTTGAGAACTCAGGCCGGCGACGCCTACGAGTTCCCTCTCAACGTCACCACCTCCGGCAACTCCGTCAACGTTTCTTCCGGCCTCGTCAACACCTCCATCTCCGGCACCGTCTACTCCGACAACCAACTCGCCGTCTACCAGCTCGACTCCGTCCTCAGGCCCATCGGCATCTTCCAGCCCCGC

Coding sequence (CDS)

ATCATGAATCGCGTCTTCTCTCCCGCGATTTTCTCTCTTTTTCTCTTTCTCTTCTTCCGTTGCAGCTCGGGCCAGGCACCAGCCGAGGCCCCGGCGCCGCCTCCGCCGACAAATATCACAAAAATACTGGAAAAGGCTGGCCAGTTCACGATTCTGATCAGACTCTTGAAGAGCACTCAAGTGGCGAATCAAATTAACAGTCAGCTTAATGACTCCAATTCTGAACTCACCATTTTCGCCCCCACTGATAATGCTTTCTCTAGTCTCAAATCGGGCACTCTAAATTCGTTGAACGACGAACAAAAAGTAGAGCTTCTCCAATTCCACATGATTCCCACGTTCCTTTCGCTCTCAAACTTCCAAACTGTGAGCAATCCGTTGAGAACTCAGGCCGGCGACGCCTACGAGTTCCCTCTCAACGTCACCACCTCCGGCAACTCCGTCAACGTTTCTTCCGGCCTCGTCAACACCTCCATCTCCGGCACCGTCTACTCCGACAACCAACTCGCCGTCTACCAGCTCGACTCCGTCCTCAGGCCCATCGGCATCTTCCAGCCCCGC

Protein sequence

IMNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIFQPR
Homology
BLAST of MS006741 vs. NCBI nr
Match: XP_022156947.1 (fasciclin-like arabinogalactan protein 12 [Momordica charantia])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV
Sbjct: 1   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQK ELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKEELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGT+YSDNQLAVYQLDSVLRPI
Sbjct: 121 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTIYSDNQLAVYQLDSVLRPI 180

Query: 182 GIFQPR 188
           GIFQPR
Sbjct: 181 GIFQPR 186

BLAST of MS006741 vs. NCBI nr
Match: XP_023519822.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.4 bits (786), Expect = 8.6e-80
Identity = 159/186 (85.48%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNSLFSLVIF--FLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           GIFQPR
Sbjct: 181 GIFQPR 184

BLAST of MS006741 vs. NCBI nr
Match: KAG7019247.1 (Fasciclin-like arabinogalactan protein 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 158/186 (84.95%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNTLFSLIIF--FLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           G+FQPR
Sbjct: 181 GVFQPR 184

BLAST of MS006741 vs. NCBI nr
Match: KAG6583491.1 (Fasciclin-like arabinogalactan protein 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 158/186 (84.95%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNTLFSLIIF--FLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           G+FQPR
Sbjct: 181 GVFQPR 184

BLAST of MS006741 vs. NCBI nr
Match: XP_022964662.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 158/186 (84.95%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNTLFSLIIF--FLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           G+FQPR
Sbjct: 181 GVFQPR 184

BLAST of MS006741 vs. ExPASy Swiss-Prot
Match: Q8LEE9 (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 3.0e-59
Identity = 114/167 (68.26%), Postives = 144/167 (86.23%), Query Frame = 0

Query: 23  SGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINSQLNDSNSELTIFAPT 82
           S  +PA APAPP PTN+TKILEKAGQFT+ IRLLKST VANQ+  QLN+S++ +TIFAP+
Sbjct: 24  SQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPS 83

Query: 83  DNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNPLRTQAGDAYE--FPLN 142
           D++F+ LK+GTLNSL DEQ+VEL+QFH+IP+++S SNFQT+SNPLRTQAGD+ +  FPLN
Sbjct: 84  DSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLN 143

Query: 143 VTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIFQPR 188
           VTTSGN+VN++SG+ NT++SG VYSD QLAVYQ+D VL P  +F PR
Sbjct: 144 VTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPR 190

BLAST of MS006741 vs. ExPASy Swiss-Prot
Match: Q8LEJ6 (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA11 PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 9.9e-55
Identity = 115/180 (63.89%), Postives = 148/180 (82.22%), Query Frame = 0

Query: 10  IFS-LFL-FLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINS 69
           IFS LF+ FL    + GQAP  AP P  PTNIT ILEKAGQFT+ IRLLKSTQ ++QIN+
Sbjct: 8   IFSNLFIFFLVIATTYGQAP--APGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 70  QLNDSNSE-LTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNP 129
           QLN S+S  LT+FAPTDNAF+SLKSGTLNSL+D+QKV+L+QFH++PT +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 130 LRTQAGDAY--EFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIF 185
           LRTQAGD    +FPLN+T+SGN VN+++G+V+ +++ +VYSD QLAVYQ+D VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185

BLAST of MS006741 vs. ExPASy Swiss-Prot
Match: Q9FFH6 (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=FLA13 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-35
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 0

Query: 7   SPAIFSLFLFLFFRCS-SGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQI 66
           +P +  L   +F     + Q  A AP P  P NIT ILEK GQF  LIRLL +TQ+ NQI
Sbjct: 4   TPLLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQI 63

Query: 67  NSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSN 126
           N Q+N S+  +T+ APTDNAF +LK GTLN L+ + +V+L+ +H+ P F +L +  +VSN
Sbjct: 64  NIQINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSN 123

Query: 127 PLRTQAGD---AYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIG 186
           P+RTQA        + LN T  GN VNVS+G+V T +S ++  +  LAVY +D VL P  
Sbjct: 124 PVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEE 183

Query: 187 IFQPR 188
           +F  R
Sbjct: 184 MFGER 188

BLAST of MS006741 vs. ExPASy Swiss-Prot
Match: Q9ZWA8 (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0

Query: 22  SSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINSQLNDSNSELTIFAP 81
           ++ Q  A AP P  P N+T ILEK GQFT  I LL  TQV +Q+N Q+N S+  +T+FAP
Sbjct: 23  ATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAP 82

Query: 82  TDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNPLRTQAG--DAYEFPL 141
           TDNAF +LK GTLN L+ + +V+L+ +H+ P + S+ +  +VSNP+RTQA   D   + L
Sbjct: 83  TDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGL 142

Query: 142 NVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIF 185
           N T   N +NVS+G V T IS ++     LAVY +D VL P  +F
Sbjct: 143 NFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187

BLAST of MS006741 vs. ExPASy Swiss-Prot
Match: Q9SIL7 (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 0

Query: 7   SPAIFSLFLFLFFRCSSGQAPAEAPAPPP-----PTNITKILEKAGQFTILIRLLKSTQV 66
           S ++FS  + L F  +     ++  AP P     P N+T ILE   QFT LI+LL +TQV
Sbjct: 2   SSSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQV 61

Query: 67  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 126
             Q++ QLN S+  +TIFAPTDNAF+ LK GTLNSL  +Q+++L+ +H+IP + SLS+  
Sbjct: 62  GFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLL 121

Query: 127 TVSNPLRTQA--GDAYEFPLNVT--TSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSV 185
             SNP+RTQA   D   F LN T     N VNVS+G+V T I+  +     LAVY +DSV
Sbjct: 122 LASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSV 181

BLAST of MS006741 vs. ExPASy TrEMBL
Match: A0A6J1DTA7 (fasciclin-like arabinogalactan protein 12 OS=Momordica charantia OX=3673 GN=LOC111023779 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.0e-95
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV
Sbjct: 1   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQK ELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKEELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGT+YSDNQLAVYQLDSVLRPI
Sbjct: 121 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTIYSDNQLAVYQLDSVLRPI 180

Query: 182 GIFQPR 188
           GIFQPR
Sbjct: 181 GIFQPR 186

BLAST of MS006741 vs. ExPASy TrEMBL
Match: A0A6J1HZ28 (fasciclin-like arabinogalactan protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111469411 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.1e-80
Identity = 158/186 (84.95%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNTLFSLIIF--FLYLFVGGSFGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           G+FQPR
Sbjct: 181 GVFQPR 184

BLAST of MS006741 vs. ExPASy TrEMBL
Match: A0A6J1HIC8 (fasciclin-like arabinogalactan protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111464673 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.1e-80
Identity = 158/186 (84.95%), Postives = 173/186 (93.01%), Query Frame = 0

Query: 2   MNRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQV 61
           MN +FS  IF  FL+LF   S GQ+PAEAP PPPP NI++ILEK GQF+ILIRLLKSTQV
Sbjct: 1   MNTLFSLIIF--FLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQV 60

Query: 62  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 121
           ANQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQ
Sbjct: 61  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 120

Query: 122 TVSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPI 181
           TVSNP+RTQAGDAYEFPLNVTTSGNSVNVSSGL NTSISGTVYSDNQLAVYQ+DSVL+PI
Sbjct: 121 TVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPI 180

Query: 182 GIFQPR 188
           G+FQPR
Sbjct: 181 GVFQPR 184

BLAST of MS006741 vs. ExPASy TrEMBL
Match: A0A5A7UNV5 (Fasciclin-like arabinogalactan protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00050 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 153/185 (82.70%), Postives = 171/185 (92.43%), Query Frame = 0

Query: 3   NRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVA 62
           N +FS  I  L +F F  CS GQ+PAEAP PPPP NI+KILEK GQF +LIRLLKSTQVA
Sbjct: 3   NSLFSLVI--LLIFFFIDCSYGQSPAEAPGPPPPMNISKILEKGGQFNVLIRLLKSTQVA 62

Query: 63  NQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQT 122
           NQIN+QLNDSNSELTIFAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQT
Sbjct: 63  NQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQT 122

Query: 123 VSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIG 182
           +SNP+RTQAGDAYEFPLNVTTSGNSVN+SSGLVNTSISGTVY+DNQLA+YQ+DSVL+PIG
Sbjct: 123 ISNPVRTQAGDAYEFPLNVTTSGNSVNISSGLVNTSISGTVYTDNQLAIYQIDSVLKPIG 182

Query: 183 IFQPR 188
           +FQPR
Sbjct: 183 VFQPR 185

BLAST of MS006741 vs. ExPASy TrEMBL
Match: A0A0A0LVA0 (Arabinogalactan protein 2 OS=Cucumis sativus OX=3659 GN=Csa_1G085380 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 153/185 (82.70%), Postives = 171/185 (92.43%), Query Frame = 0

Query: 3   NRVFSPAIFSLFLFLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVA 62
           N +FS  I  L +F F  CS GQ+PAEAP PPPP NITKILEK GQF +LIRLLK+TQVA
Sbjct: 3   NSLFSLVI--LLIFFFLDCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQVA 62

Query: 63  NQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQT 122
           NQIN+QLNDSNSELT+FAPTDNAFS+L+SGTLNSLND++KVELLQFHMIPTFLSLSNFQT
Sbjct: 63  NQINTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQT 122

Query: 123 VSNPLRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIG 182
           +SNP+RTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVY+DNQLA+YQ+DSVL+PIG
Sbjct: 123 ISNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKPIG 182

Query: 183 IFQPR 188
           +FQPR
Sbjct: 183 VFQPR 185

BLAST of MS006741 vs. TAIR 10
Match: AT5G60490.1 (FASCICLIN-like arabinogalactan-protein 12 )

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-60
Identity = 114/167 (68.26%), Postives = 144/167 (86.23%), Query Frame = 0

Query: 23  SGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINSQLNDSNSELTIFAPT 82
           S  +PA APAPP PTN+TKILEKAGQFT+ IRLLKST VANQ+  QLN+S++ +TIFAP+
Sbjct: 24  SQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPS 83

Query: 83  DNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNPLRTQAGDAYE--FPLN 142
           D++F+ LK+GTLNSL DEQ+VEL+QFH+IP+++S SNFQT+SNPLRTQAGD+ +  FPLN
Sbjct: 84  DSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLN 143

Query: 143 VTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIFQPR 188
           VTTSGN+VN++SG+ NT++SG VYSD QLAVYQ+D VL P  +F PR
Sbjct: 144 VTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPR 190

BLAST of MS006741 vs. TAIR 10
Match: AT5G03170.1 (FASCICLIN-like arabinogalactan-protein 11 )

HSP 1 Score: 214.5 bits (545), Expect = 7.1e-56
Identity = 115/180 (63.89%), Postives = 148/180 (82.22%), Query Frame = 0

Query: 10  IFS-LFL-FLFFRCSSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINS 69
           IFS LF+ FL    + GQAP  AP P  PTNIT ILEKAGQFT+ IRLLKSTQ ++QIN+
Sbjct: 8   IFSNLFIFFLVIATTYGQAP--APGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 70  QLNDSNSE-LTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNP 129
           QLN S+S  LT+FAPTDNAF+SLKSGTLNSL+D+QKV+L+QFH++PT +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 130 LRTQAGDAY--EFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIF 185
           LRTQAGD    +FPLN+T+SGN VN+++G+V+ +++ +VYSD QLAVYQ+D VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185

BLAST of MS006741 vs. TAIR 10
Match: AT5G44130.1 (FASCICLIN-like arabinogalactan protein 13 precursor )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 0

Query: 7   SPAIFSLFLFLFFRCS-SGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQI 66
           +P +  L   +F     + Q  A AP P  P NIT ILEK GQF  LIRLL +TQ+ NQI
Sbjct: 4   TPLLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQI 63

Query: 67  NSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSN 126
           N Q+N S+  +T+ APTDNAF +LK GTLN L+ + +V+L+ +H+ P F +L +  +VSN
Sbjct: 64  NIQINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSN 123

Query: 127 PLRTQAGD---AYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIG 186
           P+RTQA        + LN T  GN VNVS+G+V T +S ++  +  LAVY +D VL P  
Sbjct: 124 PVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEE 183

Query: 187 IFQPR 188
           +F  R
Sbjct: 184 MFGER 188

BLAST of MS006741 vs. TAIR 10
Match: AT1G03870.1 (FASCICLIN-like arabinoogalactan 9 )

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-34
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0

Query: 22  SSGQAPAEAPAPPPPTNITKILEKAGQFTILIRLLKSTQVANQINSQLNDSNSELTIFAP 81
           ++ Q  A AP P  P N+T ILEK GQFT  I LL  TQV +Q+N Q+N S+  +T+FAP
Sbjct: 23  ATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAP 82

Query: 82  TDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQTVSNPLRTQAG--DAYEFPL 141
           TDNAF +LK GTLN L+ + +V+L+ +H+ P + S+ +  +VSNP+RTQA   D   + L
Sbjct: 83  TDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGL 142

Query: 142 NVTTSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSVLRPIGIF 185
           N T   N +NVS+G V T IS ++     LAVY +D VL P  +F
Sbjct: 143 NFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187

BLAST of MS006741 vs. TAIR 10
Match: AT2G20520.1 (FASCICLIN-like arabinogalactan 6 )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 0

Query: 7   SPAIFSLFLFLFFRCSSGQAPAEAPAPPP-----PTNITKILEKAGQFTILIRLLKSTQV 66
           S ++FS  + L F  +     ++  AP P     P N+T ILE   QFT LI+LL +TQV
Sbjct: 2   SSSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQV 61

Query: 67  ANQINSQLNDSNSELTIFAPTDNAFSSLKSGTLNSLNDEQKVELLQFHMIPTFLSLSNFQ 126
             Q++ QLN S+  +TIFAPTDNAF+ LK GTLNSL  +Q+++L+ +H+IP + SLS+  
Sbjct: 62  GFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLL 121

Query: 127 TVSNPLRTQA--GDAYEFPLNVT--TSGNSVNVSSGLVNTSISGTVYSDNQLAVYQLDSV 185
             SNP+RTQA   D   F LN T     N VNVS+G+V T I+  +     LAVY +DSV
Sbjct: 122 LASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSV 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156947.11.2e-9498.92fasciclin-like arabinogalactan protein 12 [Momordica charantia][more]
XP_023519822.18.6e-8085.48fasciclin-like arabinogalactan protein 12 [Cucurbita pepo subsp. pepo][more]
KAG7019247.11.5e-7984.95Fasciclin-like arabinogalactan protein 11, partial [Cucurbita argyrosperma subsp... [more]
KAG6583491.11.5e-7984.95Fasciclin-like arabinogalactan protein 11, partial [Cucurbita argyrosperma subsp... [more]
XP_022964662.11.5e-7984.95fasciclin-like arabinogalactan protein 12 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q8LEE93.0e-5968.26Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
Q8LEJ69.9e-5563.89Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
Q9FFH61.8e-3545.95Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
Q9ZWA81.7e-3347.27Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9... [more]
Q9SIL71.8e-3245.99Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6... [more]
Match NameE-valueIdentityDescription
A0A6J1DTA76.0e-9598.92fasciclin-like arabinogalactan protein 12 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1HZ287.1e-8084.95fasciclin-like arabinogalactan protein 12 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HIC87.1e-8084.95fasciclin-like arabinogalactan protein 12 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A5A7UNV51.2e-7982.70Fasciclin-like arabinogalactan protein 12 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0LVA01.2e-7982.70Arabinogalactan protein 2 OS=Cucumis sativus OX=3659 GN=Csa_1G085380 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60490.12.1e-6068.26FASCICLIN-like arabinogalactan-protein 12 [more]
AT5G03170.17.1e-5663.89FASCICLIN-like arabinogalactan-protein 11 [more]
AT5G44130.11.3e-3645.95FASCICLIN-like arabinogalactan protein 13 precursor [more]
AT1G03870.11.2e-3447.27FASCICLIN-like arabinoogalactan 9 [more]
AT2G20520.11.3e-3345.99FASCICLIN-like arabinogalactan 6 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainSMARTSM00554fasc_3coord: 77..181
e-value: 1.5E-21
score: 87.6
IPR000782FAS1 domainPFAMPF02469Fasciclincoord: 48..180
e-value: 6.9E-22
score: 78.0
IPR000782FAS1 domainPROSITEPS50213FAS1coord: 36..178
score: 21.606537
IPR036378FAS1 domain superfamilyGENE3D2.30.180.10FAS1 domaincoord: 21..180
e-value: 3.4E-21
score: 78.1
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 27..180
NoneNo IPR availablePANTHERPTHR32077:SF38FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12coord: 10..187
IPR045003Fasciclin-like arabinogalactan protein, group APANTHERPTHR32077FASCICLIN-LIKE ARABINOGALACTAN PROTEINcoord: 10..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006741.1MS006741.1mRNA