MS006563 (gene) Bitter gourd (TR) v1

Overview


Name	MS006563
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold404: 1335055 .. 1336180 (-)
RNA-Seq Expression	MS006563
Synteny	MS006563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTGCAACTTCTGCTGCTCTGCTTAATGGCTTTGGCTCCCCCTTCCTCCGTGGGGGCAGTAGCAGAAGCCACGCCCTGCTCGCTGGAGCCAGAGGTGGTGTCAATGTCGTCGGCTCTCGCAAGCTCGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGCTCCCCGGCGTTAGGGGCGGCGGCAACTTGGTCGACCCCGAATGGCTCGATGGCTCGTATGTCCCTCTCACTTCTCACAATTTGCACATTTTTCACCTATTGTTTAGATTTAGATTTAGACCTGCAATTGGAAGAGTGCACATTTTCATAAGTTATTGTATTGAATCTACAAGTAGAAGAGGCATTTCATCGAACACTTTCTGAGCAGTTATCGTTCATAATCGAACGCTTTCTTAGCAATTACAGTTTATAATCTGGAAGAGGCATTTCACCGAACATTTTCTAAGCAGTTATCGTTCATAGTCTATTAGAAGCATTTCGTCGAACGCTTTCTAAGCAATTACTGTTTATAATTTGGAAGAGGCATTTCATCGAACACTTTGTAAGCAATTAGTCACCTGTTTGCTTGTGTAGGCTCCCAGGCGACTACGGGTTCGACCCACTGGGCTTGGGGAAGGACCCAGCATTCCTGAAGTGGTACAGAGAGGCAGAGCTAATCCACGGCCGGTGGGCAATGGCGGCTGTGGTCGGAATCTTCGTGGGGCAGGCTTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCGGATCCGAGGGCAATTGCTCCCTTCTCCTTCGGATCTCTGCTGGGAACACAGCTGCTGCTGATGGGATGGGTGGAAAGCAAGCGGTGGGTGGATTTCTTCAACCCTGAGTCACAATCGGTGGAGTGGGCGACGCCTTGGTCGAGGACGGCGGAGAATTTCGCGAACGCGACGGGAGAACAGGGGTACCCCGGCGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGACGGAGTTTACATTCCGGACACGGAGAAGCTGGAGAGATTGAAGTTGGCGGAGATCAAGCACGCTCGGATCGCCATGTTGGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGCTGGGTGCTCTTGGATTG

mRNA sequence

GCAACTGCAACTTCTGCTGCTCTGCTTAATGGCTTTGGCTCCCCCTTCCTCCGTGGGGGCAGTAGCAGAAGCCACGCCCTGCTCGCTGGAGCCAGAGGTGGTGTCAATGTCGTCGGCTCTCGCAAGCTCGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGCTCCCCGGCGTTAGGGGCGGCGGCAACTTGGTCGACCCCGAATGGCTCGATGGCTCGCTCCCAGGCGACTACGGGTTCGACCCACTGGGCTTGGGGAAGGACCCAGCATTCCTGAAGTGGTACAGAGAGGCAGAGCTAATCCACGGCCGGTGGGCAATGGCGGCTGTGGTCGGAATCTTCGTGGGGCAGGCTTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCGGATCCGAGGGCAATTGCTCCCTTCTCCTTCGGATCTCTGCTGGGAACACAGCTGCTGCTGATGGGATGGGTGGAAAGCAAGCGGTGGGTGGATTTCTTCAACCCTGAGTCACAATCGGTGGAGTGGGCGACGCCTTGGTCGAGGACGGCGGAGAATTTCGCGAACGCGACGGGAGAACAGGGGTACCCCGGCGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGACGGAGTTTACATTCCGGACACGGAGAAGCTGGAGAGATTGAAGTTGGCGGAGATCAAGCACGCTCGGATCGCCATGTTGGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGCTGGGTGCTCTTGGATTG

Coding sequence (CDS)

GCAACTGCAACTTCTGCTGCTCTGCTTAATGGCTTTGGCTCCCCCTTCCTCCGTGGGGGCAGTAGCAGAAGCCACGCCCTGCTCGCTGGAGCCAGAGGTGGTGTCAATGTCGTCGGCTCTCGCAAGCTCGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGCTCCCCGGCGTTAGGGGCGGCGGCAACTTGGTCGACCCCGAATGGCTCGATGGCTCGCTCCCAGGCGACTACGGGTTCGACCCACTGGGCTTGGGGAAGGACCCAGCATTCCTGAAGTGGTACAGAGAGGCAGAGCTAATCCACGGCCGGTGGGCAATGGCGGCTGTGGTCGGAATCTTCGTGGGGCAGGCTTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCGGATCCGAGGGCAATTGCTCCCTTCTCCTTCGGATCTCTGCTGGGAACACAGCTGCTGCTGATGGGATGGGTGGAAAGCAAGCGGTGGGTGGATTTCTTCAACCCTGAGTCACAATCGGTGGAGTGGGCGACGCCTTGGTCGAGGACGGCGGAGAATTTCGCGAACGCGACGGGAGAACAGGGGTACCCCGGCGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGACGGAGTTTACATTCCGGACACGGAGAAGCTGGAGAGATTGAAGTTGGCGGAGATCAAGCACGCTCGGATCGCCATGTTGGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGCTGGGTGCTCTTGGATTG

Protein sequence

ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of MS006563 vs. NCBI nr
Match: XP_022141907.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Momordica charantia])

HSP 1 Score: 525.8 bits (1353), Expect = 2.1e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR 60
           ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR
Sbjct: 3   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR 62

Query: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120
           GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW
Sbjct: 63  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 122

Query: 121 SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 123 SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 182

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF
Sbjct: 183 ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 242

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 243 YFEAGQGKTPLGALGL 258

[Close]

BLAST of MS006563 vs. NCBI nr
Match: XP_008441527.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo] >KAA0054917.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa] >TYK22706.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa])

HSP 1 Score: 495.4 bits (1274), Expect = 3.0e-136
Identity = 240/254 (94.49%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLR GSSR+  LLAGARGGVNVV S KLV++AAAQPKKSW+PGVRGG
Sbjct: 3   ATSGAVLNGLGSPFLR-GSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG+LKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALGL
Sbjct: 243 EAGQGKTPLGALGL 255

[Close]

BLAST of MS006563 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 494.6 bits (1272), Expect = 5.2e-136
Identity = 239/254 (94.09%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLRGG SR+  LLAGARGGVNVVGSRKLVIVAAAQPKKSW+P V+GG
Sbjct: 3   ATSGAVLNGLGSPFLRGG-SRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG++KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALG+
Sbjct: 243 EAGQGKTPLGALGV 255

[Close]

BLAST of MS006563 vs. NCBI nr
Match: KAG7016421.1 (Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 493.4 bits (1269), Expect = 1.2e-135
Identity = 238/254 (93.70%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLRGG SR+  LLAGARGGVNVVGSRKLVIVAAAQPKKSW+P V+GG
Sbjct: 3   ATSGAVLNGLGSPFLRGG-SRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG++KDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALG+
Sbjct: 243 EAGQGKTPLGALGV 255

[Close]

BLAST of MS006563 vs. NCBI nr
Match: XP_022988907.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 238/254 (93.70%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS ALLNG GSPFL GG SR+  LLAGARGGVNVV SRKLVIVAAAQPKKSW+P V+GG
Sbjct: 3   ATSGALLNGLGSPFLHGG-SRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GN +DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 63  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG+LKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALGL
Sbjct: 243 EAGQGKTPLGALGL 255

[Close]

BLAST of MS006563 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.6e-119
Identity = 205/260 (78.85%), Postives = 230/260 (88.46%), Query Frame = 0


Query: 1   ATATSA-ALLNGFGSPFLRGGSSRSHALL---AGARGGVNVVGSRKLVIVAAAQPKKSWL 60
           A ATSA A++NGF SPFL GG   S +LL   +    GV+    + +V+ AAA PKKSW+
Sbjct: 2   AAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWI 61

Query: 61  PGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 120
           P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFV
Sbjct: 62  PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV 121

Query: 121 GQAWSGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 180
           GQAW+GIPWFEAGADP A+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPW
Sbjct: 122 GQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPW 181

Query: 181 SRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLA 240
           SRTAENF+N+TGEQGYPGGKFFDPL  AG++ +GVY PDT+KLERLKLAEIKHAR+AMLA
Sbjct: 182 SRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLA 241

Query: 241 MLIFYFEAGQGKTPLGALGL 257
           MLIFYFEAGQGKTPLGALGL
Sbjct: 242 MLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of MS006563 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.1e-119
Identity = 206/253 (81.42%), Postives = 221/253 (87.35%), Query Frame = 0


Query: 4   TSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGGG 63
           TSAA+LNG  S FL GG+     L A     V    + K   V AA  KKSW+P VRGGG
Sbjct: 4   TSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGG 63

Query: 64  NLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 123
           NLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGI
Sbjct: 64  NLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI 123

Query: 124 PWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 183
           PWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENF
Sbjct: 124 PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENF 183

Query: 184 ANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 243
           AN TGEQGYPGGKFFDPL  AG+L +GVY+PDTEKLERLK+AEIKHAR+AMLAMLIFYFE
Sbjct: 184 ANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243

Query: 244 AGQGKTPLGALGL 257
           AGQGKTPLGALGL
Sbjct: 244 AGQGKTPLGALGL 256

[Close]

BLAST of MS006563 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 5.6e-117
Identity = 204/256 (79.69%), Postives = 226/256 (88.28%), Query Frame = 0


Query: 2   TATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAA-QPKKSWLPGVR 61
           T ++ A+LNG  S FL GG  ++ ALL GA     V   ++ V+ AAA  PKKSW+P V+
Sbjct: 3   TTSATAVLNGLSSSFLTGG-KKTQALL-GAHVTARVTTPKRFVVAAAAVAPKKSWIPAVK 62

Query: 62  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 121
            GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 63  SGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 122

Query: 122 SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 181
           SGIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TA
Sbjct: 123 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTA 182

Query: 182 ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 241
           ENFAN TGEQGYPGGKFFDPL  AG+L +GVY+PDTEKLERLKLAEIKH+R+AMLAMLIF
Sbjct: 183 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 242

Query: 242 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 243 YFEAGQGKTPLGALGL 256

[Close]

BLAST of MS006563 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.3e-32
Identity = 94/259 (36.29%), Postives = 126/259 (48.65%), Query Frame = 0


Query: 1   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGG--------VNVVGSRKLVI--VAAAQ 60
           A A+S      F SP  +   S   A  A   GG        +  VGSR + +  VAA  
Sbjct: 4   ACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADP 63

Query: 61  PKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAA 120
            +  W PG         PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM  
Sbjct: 64  DRPLWFPG------STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 123

Query: 121 VVGIFVGQAWSGI------PWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFN 180
             GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   
Sbjct: 124 AAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIK 183

Query: 181 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKL 240
           P   + +   P      N    T + GYPGG +FDPLG+              K++ L+ 
Sbjct: 184 PGCVNTDPIFP-----NNKLTGT-DVGYPGGLWFDPLGWGSG--------SPAKIKELRT 239

Query: 241 AEIKHARIAMLAMLIFYFE 244
            EIK+ R+AMLA++  +F+
Sbjct: 244 KEIKNGRLAMLAVMGAWFQ 239

[Close]

BLAST of MS006563 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 88/239 (36.82%), Postives = 117/239 (48.95%), Query Frame = 0


Query: 23  RSHALLAGARGGVNVVGSRKLVIVAAAQPKKS-----------WLPGVRGGGNLVDPEWL 82
           R H     + GG   +   +LV+V A +   S           W PG         PEWL
Sbjct: 27  RPHVASTSSTGG--RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSS------PPEWL 86

Query: 83  DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW------SGIPW 142
           DGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI + +            W
Sbjct: 87  DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSW 146

Query: 143 FEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 202
           ++AG+           +L   Q++LMGW E +RW D   P S  +E   P      +  N
Sbjct: 147 YDAGSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVN 206

Query: 203 ATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 245
              + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 207 PKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of MS006563 vs. ExPASy TrEMBL
Match: A0A6J1CL59 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012163 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR 60
           ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR
Sbjct: 3   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVR 62

Query: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120
           GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW
Sbjct: 63  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 122

Query: 121 SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 123 SGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 182

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF
Sbjct: 183 ENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 242

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 243 YFEAGQGKTPLGALGL 258

[Close]

BLAST of MS006563 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 240/254 (94.49%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLR GSSR+  LLAGARGGVNVV S KLV++AAAQPKKSW+PGVRGG
Sbjct: 3   ATSGAVLNGLGSPFLR-GSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG+LKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALGL
Sbjct: 243 EAGQGKTPLGALGL 255

[Close]

BLAST of MS006563 vs. ExPASy TrEMBL
Match: A0A1S3B4E4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485628 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 240/254 (94.49%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLR GSSR+  LLAGARGGVNVV S KLV++AAAQPKKSW+PGVRGG
Sbjct: 3   ATSGAVLNGLGSPFLR-GSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG+LKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALGL
Sbjct: 243 EAGQGKTPLGALGL 255

[Close]

BLAST of MS006563 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.5e-136
Identity = 239/254 (94.09%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS A+LNG GSPFLRGG SR+  LLAGARGGVNVVGSRKLVIVAAAQPKKSW+P V+GG
Sbjct: 3   ATSGAVLNGLGSPFLRGG-SRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 63  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG++KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALG+
Sbjct: 243 EAGQGKTPLGALGV 255

[Close]

BLAST of MS006563 vs. ExPASy TrEMBL
Match: A0A6J1JEC2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486120 PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.3e-136
Identity = 238/254 (93.70%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 3   ATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGG 62
           ATS ALLNG GSPFL GG SR+  LLAGARGGVNVV SRKLVIVAAAQPKKSW+P V+GG
Sbjct: 3   ATSGALLNGLGSPFLHGG-SRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 62

Query: 63  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 122
           GN +DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 63  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 122

Query: 123 IPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 123 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 182

Query: 183 FANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242
           FANATGEQGYPGGKFFDPLGFAG+LKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 183 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 242

Query: 243 EAGQGKTPLGALGL 257
           EAGQGKTPLGALGL
Sbjct: 243 EAGQGKTPLGALGL 255

[Close]

BLAST of MS006563 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 427.6 bits (1098), Expect = 7.3e-120
Identity = 204/257 (79.38%), Postives = 225/257 (87.55%), Query Frame = 0


Query: 1   ATATSAALLNGFGSPFLRGGSSRSHALLAGARGGVNVVGSRKLVI-VAAAQPKKSWLPGV 60
           A A S A+L+G GS FL GG   + AL +G   G   VG + L++  AAAQPKKSW+P V
Sbjct: 2   AMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAV 61

Query: 61  RGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 120
           +GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 62  KGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 121

Query: 121 WSGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 180
           WSG+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+T
Sbjct: 122 WSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKT 181

Query: 181 AENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLI 240
           AENFAN TG+QGYPGG+FFDPLG AG  +DGVY PD EKLERLKLAEIKH+R+AM+AMLI
Sbjct: 182 AENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLI 241

Query: 241 FYFEAGQGKTPLGALGL 257
           FYFEAGQGKTPLGALGL
Sbjct: 242 FYFEAGQGKTPLGALGL 258

[Close]

BLAST of MS006563 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-32
Identity = 88/239 (36.82%), Postives = 117/239 (48.95%), Query Frame = 0


Query: 23  RSHALLAGARGGVNVVGSRKLVIVAAAQPKKS-----------WLPGVRGGGNLVDPEWL 82
           R H     + GG   +   +LV+V A +   S           W PG         PEWL
Sbjct: 27  RPHVASTSSTGG--RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSS------PPEWL 86

Query: 83  DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW------SGIPW 142
           DGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI + +            W
Sbjct: 87  DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSW 146

Query: 143 FEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 202
           ++AG+           +L   Q++LMGW E +RW D   P S  +E   P      +  N
Sbjct: 147 YDAGSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVN 206

Query: 203 ATGEQGYPGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 245
              + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 207 PKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of MS006563 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 137.1 bits (344), Expect = 2.0e-32
Identity = 94/232 (40.52%), Postives = 124/232 (53.45%), Query Frame = 0


Query: 22  SRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGF 81
           +R  + +  A GG+N            A  + +WLPG      L  P +LDG+L GDYGF
Sbjct: 25  TRRISSVKAAGGGIN---------PTVAVERATWLPG------LNPPPYLDGNLAGDYGF 84

Query: 82  DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI----PWFEAGADPRAI 141
           DPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI     W+EAGA     
Sbjct: 85  DPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGA----- 144

Query: 142 APFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 201
             F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A   A    E GY
Sbjct: 145 VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA---ALEGLEPGY 204

Query: 202 PGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 245
           PGG   +PLG A          D +     KL EIK+ R+AM+AML F+ +A
Sbjct: 205 PGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of MS006563 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 137.1 bits (344), Expect = 2.0e-32
Identity = 94/232 (40.52%), Postives = 124/232 (53.45%), Query Frame = 0


Query: 22  SRSHALLAGARGGVNVVGSRKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGF 81
           +R  + +  A GG+N            A  + +WLPG      L  P +LDG+L GDYGF
Sbjct: 25  TRRISSVKAAGGGIN---------PTVAVERATWLPG------LNPPPYLDGNLAGDYGF 84

Query: 82  DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI----PWFEAGADPRAI 141
           DPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI     W+EAGA     
Sbjct: 85  DPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGA----- 144

Query: 142 APFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 201
             F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A   A    E GY
Sbjct: 145 VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA---ALEGLEPGY 204

Query: 202 PGGKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 245
           PGG   +PLG A          D +     KL EIK+ R+AM+AML F+ +A
Sbjct: 205 PGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of MS006563 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-32
Identity = 83/229 (36.24%), Postives = 114/229 (49.78%), Query Frame = 0


Query: 33  GGVNVVGSRKLVIVAAAQPKKS------------WLPGVRGGGNLVDPEWLDGSLPGDYG 92
           GG  +   +KL + A ++P  S            W PG         PEWLDGSLPGD+G
Sbjct: 21  GGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPG------STPPEWLDGSLPGDFG 80

Query: 93  FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPRA 152
           FDPLGL  DP  LKW  +AE++H RWAM    GIF+ +  + I       W+ AG     
Sbjct: 81  FDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYF 140

Query: 153 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 212
                  +L   +L+L+GW E +RW D   P S + +   P      N    T + GYPG
Sbjct: 141 T---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-----NNKLTGT-DVGYPG 200

Query: 213 GKFFDPLGFAGSLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 244
           G +FDPLG+              KL+ L+  EIK+ R+AMLA++  +F+
Sbjct: 201 GLWFDPLGWGSG--------SPAKLKELRTKEIKNGRLAMLAVMGAWFQ 226

The following BLAST results are available for this feature:

BLAST of MS006563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141907.1	2.1e-145	100.00	chlorophyll a-b binding protein CP24 10A, chloroplastic [Momordica charantia]	[more]
XP_008441527.1	3.0e-136	94.49	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo...	[more]
XP_022993917.1	5.2e-136	94.09	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
KAG7016421.1	1.2e-135	93.70	Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_022988907.1	1.5e-135	93.70	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of MS006563 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36494	1.6e-119	78.85	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
P27524	2.1e-119	81.42	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P27525	5.6e-117	79.69	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
P13869	3.3e-32	36.29	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q8LCQ4	2.1e-31	36.82	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]

BLAST of MS006563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL59	1.0e-145	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3DGI0	1.5e-136	94.49	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B4E4	1.5e-136	94.49	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1JU87	2.5e-136	94.09	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JEC2	7.3e-136	93.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of MS006563 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	7.3e-120	79.38	light harvesting complex photosystem II subunit 6	[more]
AT1G19150.1	1.5e-32	36.82	photosystem I light harvesting complex gene 6	[more]
AT1G45474.1	2.0e-32	40.52	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.0e-32	40.52	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	7.5e-32	36.24	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 68..244 e-value: 2.3E-48 score: 164.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 68..255 e-value: 1.3E-53 score: 183.8
None	No IPR available	PANTHER	PTHR21649:SF114	CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC	coord: 2..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 65..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006563.1	MS006563.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane