MS006524 (gene) Bitter gourd (TR) v1

Overview


Name	MS006524
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	scaffold404: 777951 .. 778106 (-)
RNA-Seq Expression	MS006524
Synteny	MS006524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTGGATTTCTACGATTATTTTTTGACAGAAGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAAGGAGTAGGCATTATTTGTAGAGAAGAAGTAATAAATTGGGGGTTATCGGGACCAATGCTACGGAGC

mRNA sequence

TGTTTGGATTTCTACGATTATTTTTTGACAGAAGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAAGGAGTAGGCATTATTTGTAGAGAAGAAGTAATAAATTGGGGGTTATCGGGACCAATGCTACGGAGC

Coding sequence (CDS)

TGTTTGGATTTCTACGATTATTTTTTGACAGAAGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAAGGAGTAGGCATTATTTGTAGAGAAGAAGTAATAAATTGGGGGTTATCGGGACCAATGCTACGGAGC

Protein sequence

CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

Homology

[Close]

BLAST of MS006524 vs. NCBI nr
Match: YP_009751533.1 (NADH dehydrogenase subunit H [Thladiantha dubia] >QIT04014.1 NADH dehydrogenase subunit H [Thladiantha dubia])

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEVAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. NCBI nr
Match: YP_009752883.1 (NADH dehydrogenase subunit H [Baijiania yunnanensis] >QIT05955.1 NADH dehydrogenase subunit H [Baijiania yunnanensis])

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. NCBI nr
Match: YP_009468918.1 (NADH dehydrogenase subunit 7 [Gynostemma compressum] >AVA29834.1 NADH dehydrogenase subunit 7 [Gynostemma compressum])

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. NCBI nr
Match: QIT04105.1 (NADH dehydrogenase subunit H [Luffa aegyptiaca] >QKX48531.1 NADH-plastoquinone oxidoreductase subunit 7 [Luffa acutangula] >QKX48617.1 NADH-plastoquinone oxidoreductase subunit 7 [Luffa aegyptiaca])

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. NCBI nr
Match: YP_009752975.1 (NADH dehydrogenase subunit H [Momordica sessilifolia] >QIT06047.1 NADH dehydrogenase subunit H [Momordica sessilifolia])

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-21
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGII  EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy Swiss-Prot
Match: P56753 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhH PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy Swiss-Prot
Match: A4QKQ1 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=ndhH PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy Swiss-Prot
Match: A4QKZ0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=ndhH PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy Swiss-Prot
Match: A4QL77 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Draba nemorosa OX=171822 GN=ndhH PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVVEYQKLITRNPIFLERVEGVGIIDGEEAINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy TrEMBL
Match: A0A6H0EQP9 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Thladiantha dubia OX=210344 GN=ndhH PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEVAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy TrEMBL
Match: A0A109WZQ2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=ndhH PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy TrEMBL
Match: A0A6H0ERF6 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Indofevillea khasiana OX=383665 GN=ndhH PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy TrEMBL
Match: A0A515BLN0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=ndhH PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. ExPASy TrEMBL
Match: A0A6H0EQG6 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=ndhH PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPMLRA 226

[Close]

BLAST of MS006524 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 96.7 bits (239), Expect = 6.0e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS 53
           CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Sbjct: 175 CLDFCDYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRA 226

The following BLAST results are available for this feature:

BLAST of MS006524 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751533.1	1.1e-19	94.23	NADH dehydrogenase subunit H [Thladiantha dubia] >QIT04014.1 NADH dehydrogenase ...	[more]
YP_009752883.1	6.8e-19	92.31	NADH dehydrogenase subunit H [Baijiania yunnanensis] >QIT05955.1 NADH dehydrogen...	[more]
YP_009468918.1	6.8e-19	92.31	NADH dehydrogenase subunit 7 [Gynostemma compressum] >AVA29834.1 NADH dehydrogen...	[more]
QIT04105.1	6.8e-19	92.31	NADH dehydrogenase subunit H [Luffa aegyptiaca] >QKX48531.1 NADH-plastoquinone o...	[more]
YP_009752975.1	6.8e-19	92.31	NADH dehydrogenase subunit H [Momordica sessilifolia] >QIT06047.1 NADH dehydroge...	[more]

BLAST of MS006524 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL2	9.9e-21	90.38	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
P56753	8.4e-20	86.54	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Arabidopsis thaliana ...	[more]
A4QKQ1	8.4e-20	86.54	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Capsella bursa-pastor...	[more]
A4QKZ0	8.4e-20	86.54	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Crucihimalaya wallich...	[more]
A4QL77	8.4e-20	86.54	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Draba nemorosa OX=171...	[more]

BLAST of MS006524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQP9	5.1e-20	94.23	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Thladiantha dubia OX=...	[more]
A0A109WZQ2	3.3e-19	92.31	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentaphyll...	[more]
A0A6H0ERF6	3.3e-19	92.31	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Indofevillea khasiana...	[more]
A0A515BLN0	3.3e-19	92.31	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Siraitia grosvenorii ...	[more]
A0A6H0EQG6	3.3e-19	92.31	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Luffa aegyptiaca OX=3...	[more]

BLAST of MS006524 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	6.0e-21	86.54	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 3..52 e-value: 5.3E-14 score: 51.9
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 1..52 e-value: 1.1E-12 score: 49.4
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 2..51
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 1..51
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006524.1	MS006524.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding