MS006414 (gene) Bitter gourd (TR) v1

Overview


Name	MS006414
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LOB domain-containing protein
Location	scaffold327: 455340 .. 457234 (+)
RNA-Seq Expression	MS006414
Synteny	MS006414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGAGGTGAATATGGGCGGGAGCTGCAAAAAGAGTGCCCCATCCCCATGCGCCGCGTGCAAGCTTCTGCGGCGGCGGTGCTCTCAGGACTGCGTATTTGGCCCTTATTTCCCAGCCGACCAGCCCCACAAATTCTCCTGCGTCCATAAAGTCTTTGGAGCTAGTAATGTCAGCAAGTTGTTGCAGGTTCAATCTCAATCTCCATTTCCCTTCATTTTTCAACATTTTCCATTCATAAATTTAAGCTTTTCAATTGAAATTCACTCCATAGTTCATTGTCATCGGAATTAAGTAGGATTTAACAACATTAATTAAATAATTATCTCGAAAATAAATTTTACAGTGTGAACTGAATAATACCAAGAGAAAGCATTGGGAAGATGGCGGGAAAATTTCTGGTACTACACGAGTATCATACTCCCTTCTATTGTCACATCAGCAGTGTATTAAAATGATGTGGAATCCATTTCTTATATTTATTTTGTAAATGAGAGGGAATATGGTACTCCCCTAATACTAGAAATTTTCTCGAAGGCCACTTTTGCAGGTTACTCTTCCATCCTACATGTAAGAGAGAAGGAATGTAGGATGCATGGAAAATTTAATAAAGGAAAAGAAAAAAGATGTGCTTCATTATGCTTGCAGAGGAATTCAATCAATTTTGTTTTAATTAAAGTTGATGGGGAGTTCTTTCTTTTTCCCACTTTATGAACATTAAACAGTTTTCTTTTTTCCTTTTTTTTTCTTTCATAGACTCTGAAATCAACAAACGCTCATCTTTTGGGTCGTGTGGAAATTGTTAATTTATACGTAAAAAACAAACATATATGGACAAGTGTACACTTGTCTGCATGTTTGGCTCCTTCTTCTTCTTTCTTTTTATTGTTATTTTCTATCTCATTTATTCATTTACTTTTTTGGTTAGGCGTGGGGTCACACGTTGATAGAGATATTTTGTCTAAGGCATACTGAGGGTAATTATTGAGTAATGCTAACGTAGTAATGATAATTTCTACAGTGACTGGAGGCTTAAACGTCATGTCGAACTTTTATATCTCTTTAACTATCCGACAATGTCGTCTTAACTCCGAATCTTTTAAAAGTCAAAGGGGTTGGGAAACAATTAACCCTAGCTTTAACTAAATCTTTCTGTGCTTAAAAAGATGATGAAACCCATACGTGTTCAATAAATTATTTGAGAGGGTTTGAAGTTTCAACCATATGTAACACATAATCTTATATTACGTGTGAAGAAGTTATAATTCTGTTTTGAGCATATATATATATATTAGAAAAAGTACCATTTATTAGAGATATGTGAGAAATATACGTACAAAAAGATAGACCTAGATAAACACAATTTAATTTAGAGAAATGGTAGTTATGTTGTAATTACAAAAGAGGTTATAGACTTGGTTGACCAAGTGGAAGTTGTGATAGAGATATCTTCCCAAAAAAAAATATGAGTCTTTGTCACCTCCGAGAAGAGTTGTATAATATATATATGTAGTGGTCTTGTTGAATAGTTTTCTAGTTTAATATATATTTGTAGTTCTTAGTGTTTGAGTACATTTTTTGAGTTTGAATTCAATTTAATCAATCATAACATTGATATAAATAAATATTAGAATTTATGATGATGATAAATTTACATGACAAAATATTTAGTAACTTGATAAAAATTTAAAAGAGAATAGGAAGTGGCAGAGGAGCAGCGGAGCGACGCGGTGAGTTCGATGGTGTACGAAGCGAAGGCGAGAATAAAAGACCCGGTTTACGGGTGCGTGGGAACAATATCGAGCCTACAGCGGCAAGTGGAGGCACTCCAAGAGCAACTGGCCATCACCCAGGCCCAGCTGCTCCACTTGAAAATGGCCCAATGCCCCACT

mRNA sequence

ATGGCGACGGAGGTGAATATGGGCGGGAGCTGCAAAAAGAGTGCCCCATCCCCATGCGCCGCGTGCAAGCTTCTGCGGCGGCGGTGCTCTCAGGACTGCGTATTTGGCCCTTATTTCCCAGCCGACCAGCCCCACAAATTCTCCTGCGTCCATAAAGTCTTTGGAGCTAGTAATGTCAGCAAGTTGTTGCAGGAAGTGGCAGAGGAGCAGCGGAGCGACGCGGTGAGTTCGATGGTGTACGAAGCGAAGGCGAGAATAAAAGACCCGGTTTACGGGTGCGTGGGAACAATATCGAGCCTACAGCGGCAAGTGGAGGCACTCCAAGAGCAACTGGCCATCACCCAGGCCCAGCTGCTCCACTTGAAAATGGCCCAATGCCCCACT

Coding sequence (CDS)

ATGGCGACGGAGGTGAATATGGGCGGGAGCTGCAAAAAGAGTGCCCCATCCCCATGCGCCGCGTGCAAGCTTCTGCGGCGGCGGTGCTCTCAGGACTGCGTATTTGGCCCTTATTTCCCAGCCGACCAGCCCCACAAATTCTCCTGCGTCCATAAAGTCTTTGGAGCTAGTAATGTCAGCAAGTTGTTGCAGGAAGTGGCAGAGGAGCAGCGGAGCGACGCGGTGAGTTCGATGGTGTACGAAGCGAAGGCGAGAATAAAAGACCCGGTTTACGGGTGCGTGGGAACAATATCGAGCCTACAGCGGCAAGTGGAGGCACTCCAAGAGCAACTGGCCATCACCCAGGCCCAGCTGCTCCACTTGAAAATGGCCCAATGCCCCACT

Protein sequence

MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQCPT

Homology

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BLAST of MS006414 vs. NCBI nr
Match: XP_022147981.1 (LOB domain-containing protein 4-like [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60
           MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS
Sbjct: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60

Query: 61  KLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120
           KLLQEVAEEQRSDAVSS+VYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH
Sbjct: 61  KLLQEVAEEQRSDAVSSIVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120

Query: 121 LKMAQCPT 129
           LKMAQCPT
Sbjct: 121 LKMAQCPT 128

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BLAST of MS006414 vs. NCBI nr
Match: XP_022930643.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >KAG6589307.1 LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-50
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60
           MA E+ M GSCKK APSPCAACKLLRRRC+QDCVF PYFPADQPHKFS VHKVFGASNV+
Sbjct: 1   MAKEM-MKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVT 60

Query: 61  KLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120
           KLLQE+ E+ RSDAVSSMVYEA ARI+DP+YGCVGTIS LQRQV+ALQ+QLA+TQAQLLH
Sbjct: 61  KLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLH 120

Query: 121 LKMAQ 126
            KMAQ
Sbjct: 121 FKMAQ 124

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BLAST of MS006414 vs. NCBI nr
Match: KAG7023005.1 (LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-50
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 7   MGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEV 66
           M GSCKK APSPCAACKLLRRRC+QDCVF PYFPADQPHKFS VHKVFGASNV+KLLQE+
Sbjct: 6   MKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQEL 65

Query: 67  AEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
            E+ RSDAVSSMVYEA ARI+DP+YGCVGTIS LQRQV+ALQ+QLA+TQAQLLH KMAQ
Sbjct: 66  PEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQ 124

[Close]

BLAST of MS006414 vs. NCBI nr
Match: XP_023531527.1 (LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-50
Identity = 103/125 (82.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60
           MA E+ M GSCKK APSPCAACKLLRRRC+QDCVF PYFPADQPHKFS VHKVFGASNV+
Sbjct: 1   MAKEM-MKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVT 60

Query: 61  KLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120
           KLLQE+ E+ RSDAVSS+VYEA ARI+DP+YGCVGTIS LQRQV+ALQ+QLA+TQAQLLH
Sbjct: 61  KLLQELPEQHRSDAVSSLVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLH 120

Query: 121 LKMAQ 126
            KMAQ
Sbjct: 121 FKMAQ 124

[Close]

BLAST of MS006414 vs. NCBI nr
Match: XP_038888383.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 7   MGGSCKK-SAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQE 66
           M GSCKK S  +PCAACKLLRRRC+QDCVF PYFPADQPHKFS VHKVFGASNVSKLLQE
Sbjct: 10  MNGSCKKGSGAAPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQE 69

Query: 67  VAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
           + E QRSDAVSSMVYEA ARI+DPVYGCVGTIS LQRQV+ALQ+QLA+TQAQL+ LKM Q
Sbjct: 70  LPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQAQLVQLKMGQ 129

[Close]

BLAST of MS006414 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.6e-42
Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 10  SCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEE 69
           S K+ A SPCAACKLLRRRC+QDCVF PYFPAD+P KF+ VH+VFGASNV+K+LQE+   
Sbjct: 5   SRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIH 64

Query: 70  QRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
           QR DAVSSMVYEA AR++DPVYGCVG ISSLQ+Q++ LQ QLA+ QA+++HL++ Q
Sbjct: 65  QRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

[Close]

BLAST of MS006414 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 8.9e-39
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           SPCA+CKLLRRRC++DC+F PYFP D PHKF+ VHKVFGASNVSK+LQE+   QR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQCPT 129
           S+V+EA AR++DPVYGCVG IS LQ QV  LQ QLA+ QA++L ++M   PT
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of MS006414 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-38
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQD-CVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAV 76
           SPCA CKLLRR+C +D CVF PYFPA +P+KF+ VHK+FGASNV+K+LQE++E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 77  SSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLK 123
            SMVYEA ARI+DPVYGCVGTISSL RQ+E LQ QLA  QA+L+H++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of MS006414 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-34
Identity = 67/109 (61.47%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           +PCAACKLLRRRC+Q+C F PYF   +PHKF+ VHKVFGASNVSK+L EV E QR+DA +
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
           S+VYEA  R++DPVYGC+G IS+LQ+QV+ALQ +L   ++++L  K  +
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

[Close]

BLAST of MS006414 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-34
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           SPCAACK LRR+C+ DCVF PYFP ++P KF+ VH++FGASNVSK+L EVA  QR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLL 120
           S+ YEA+AR+KDPVYGCVG IS LQRQV  LQ +L  T A L+
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

[Close]

BLAST of MS006414 vs. ExPASy TrEMBL
Match: A0A6J1D3Z9 (LOB domain-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC111016775 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.5e-65
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60
           MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS
Sbjct: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60

Query: 61  KLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120
           KLLQEVAEEQRSDAVSS+VYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH
Sbjct: 61  KLLQEVAEEQRSDAVSSIVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120

Query: 121 LKMAQCPT 129
           LKMAQCPT
Sbjct: 121 LKMAQCPT 128

[Close]

BLAST of MS006414 vs. ExPASy TrEMBL
Match: A0A6J1EVU9 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111437046 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVS 60
           MA E+ M GSCKK APSPCAACKLLRRRC+QDCVF PYFPADQPHKFS VHKVFGASNV+
Sbjct: 1   MAKEM-MKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVT 60

Query: 61  KLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLH 120
           KLLQE+ E+ RSDAVSSMVYEA ARI+DP+YGCVGTIS LQRQV+ALQ+QLA+TQAQLLH
Sbjct: 61  KLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLH 120

Query: 121 LKMAQ 126
            KMAQ
Sbjct: 121 FKMAQ 124

[Close]

BLAST of MS006414 vs. ExPASy TrEMBL
Match: A0A5A7U720 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00280 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 100/129 (77.52%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 2   ATEVNMGGSCKK--SAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNV 61
           ++E+ M GSCKK   A +PCAACKLLRRRC+ DCVF PYFPAD PHKFS VHKVFGASNV
Sbjct: 3   SSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNV 62

Query: 62  SKLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLL 121
           SKLLQE+ E+QRSDAVSSMVYEA ARI+DPVYGCVGTIS LQ+QV+ALQ+QLAITQAQL+
Sbjct: 63  SKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLV 122

Query: 122 HLKMAQCPT 129
            LKM Q  T
Sbjct: 123 QLKMGQFTT 131

[Close]

BLAST of MS006414 vs. ExPASy TrEMBL
Match: A0A1S3BGP4 (LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 100/129 (77.52%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 2   ATEVNMGGSCKK--SAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNV 61
           ++E+ M GSCKK   A +PCAACKLLRRRC+ DCVF PYFPAD PHKFS VHKVFGASNV
Sbjct: 3   SSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNV 62

Query: 62  SKLLQEVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLL 121
           SKLLQE+ E+QRSDAVSSMVYEA ARI+DPVYGCVGTIS LQ+QV+ALQ+QLAITQAQL+
Sbjct: 63  SKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLV 122

Query: 122 HLKMAQCPT 129
            LKM Q  T
Sbjct: 123 QLKMGQFTT 131

[Close]

BLAST of MS006414 vs. ExPASy TrEMBL
Match: A0A0A0K5P4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 7   MGGSCKK--SAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQ 66
           M GSCKK   A +PCAACKLLRRRC+ DCVF PYFPAD PHKFS VHKVFGASNVSKLLQ
Sbjct: 10  MNGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQ 69

Query: 67  EVAEEQRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMA 126
           E+ E+QRSDAVSSMVYEA ARI+DPVYGCVG IS LQ+QV+ALQ+QLAITQAQL+ +KM 
Sbjct: 70  ELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQAQLVQMKMG 129

Query: 127 QCPT 129
           Q  T
Sbjct: 130 QFTT 133

[Close]

BLAST of MS006414 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 171.0 bits (432), Expect = 6.1e-43
Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 10  SCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEE 69
           S K+ A SPCAACKLLRRRC+QDCVF PYFPAD+P KF+ VH+VFGASNV+K+LQE+   
Sbjct: 5   SRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIH 64

Query: 70  QRSDAVSSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
           QR DAVSSMVYEA AR++DPVYGCVG ISSLQ+Q++ LQ QLA+ QA+++HL++ Q
Sbjct: 65  QRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

[Close]

BLAST of MS006414 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 161.0 bits (406), Expect = 6.3e-40
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           SPCA+CKLLRRRC++DC+F PYFP D PHKF+ VHKVFGASNVSK+LQE+   QR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQCPT 129
           S+V+EA AR++DPVYGCVG IS LQ QV  LQ QLA+ QA++L ++M   PT
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of MS006414 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-39
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQD-CVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAV 76
           SPCA CKLLRR+C +D CVF PYFPA +P+KF+ VHK+FGASNV+K+LQE++E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 77  SSMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLK 123
            SMVYEA ARI+DPVYGCVGTISSL RQ+E LQ QLA  QA+L+H++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of MS006414 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 147.5 bits (371), Expect = 7.3e-36
Identity = 67/109 (61.47%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           +PCAACKLLRRRC+Q+C F PYF   +PHKF+ VHKVFGASNVSK+L EV E QR+DA +
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQ 126
           S+VYEA  R++DPVYGC+G IS+LQ+QV+ALQ +L   ++++L  K  +
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

[Close]

BLAST of MS006414 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-35
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 17  SPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVS 76
           SPCAACK LRR+C+ DCVF PYFP ++P KF+ VH++FGASNVSK+L EVA  QR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 77  SMVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLL 120
           S+ YEA+AR+KDPVYGCVG IS LQRQV  LQ +L  T A L+
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

The following BLAST results are available for this feature:

BLAST of MS006414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147981.1	1.6e-64	99.22	LOB domain-containing protein 4-like [Momordica charantia]	[more]
XP_022930643.1	2.2e-50	83.20	LOB domain-containing protein 4-like [Cucurbita moschata] >KAG6589307.1 LOB doma...	[more]
KAG7023005.1	3.7e-50	84.87	LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023531527.1	4.9e-50	82.40	LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_038888383.1	2.9e-47	83.33	LOB domain-containing protein 4-like [Benincasa hispida]	[more]

BLAST of MS006414 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	8.6e-42	69.83	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	8.9e-39	66.96	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	1.5e-38	71.03	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8L5T5	1.0e-34	61.47	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q8L8Q3	3.0e-34	66.99	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]

BLAST of MS006414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3Z9	7.5e-65	99.22	LOB domain-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1EVU9	1.1e-50	83.20	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A5A7U720	2.4e-47	77.52	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BGP4	2.4e-47	77.52	LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=...	[more]
A0A0A0K5P4	7.8e-46	78.23	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=3 SV...	[more]

BLAST of MS006414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	6.1e-43	69.83	LOB domain-containing protein 4	[more]
AT2G30130.1	6.3e-40	66.96	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	1.1e-39	71.03	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	7.3e-36	61.47	LOB domain-containing protein 15	[more]
AT3G27650.1	2.1e-35	66.99	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..124
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 12..126
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 12..126
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 18..115 e-value: 7.6E-43 score: 145.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 17..118 score: 26.662523

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006414.1	MS006414.1	mRNA