Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC
mRNA sequence
CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC
Coding sequence (CDS)
CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC
Protein sequence
QLGSIVMAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Homology
BLAST of MS006234 vs. NCBI nr
Match:
XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])
HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQ SSSKCHDW
Sbjct: 1 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSKCHDW 60
Query: 67 WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME
Sbjct: 61 WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 120
Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
GGDFSDGFEFGFHEKML+LDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Sbjct: 121 GGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175
BLAST of MS006234 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS-KCHD 66
MA+GEL RKF ELKDINEKQESRVRY+E K Q IV GYLI TRLFFFGISQ SSS C D
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60
Query: 67 WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 126
WWVIL+LSLLCSF+YFLLFLDA L++T+ QLD+ICKEL E+ QQILV++NQDDV L+M
Sbjct: 61 WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120
Query: 127 EGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
E G+ S GFEFGFHEKMLMLDHFR VGRKVYIYFTV AL+AVTAIELYVSKY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of MS006234 vs. NCBI nr
Match:
KAG7016840.1 (hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 118/177 (66.67%), Postives = 142/177 (80.23%), Query Frame = 0
Query: 4 SIVMAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKC 63
SIVMA GEL+R+ EL D+NEKQE++V YH+ K Q IV GYLI RLFF+GISQ S KC
Sbjct: 33 SIVMAHGELKRRIKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFFYGISQALSFKC 92
Query: 64 HDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDL 123
++WWVIL+LSLL +F+YFLLFLDA T L++ + QLD+ICKELIE CQQ L+ +N+DD+DL
Sbjct: 93 NNWWVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDL 152
Query: 124 AMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 181
+E G+ D FEFGFH+KMLMLDH VGR VYIYF VCAL+AV AIELY KYLLC
Sbjct: 153 -VEAGESCDRFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 208
BLAST of MS006234 vs. NCBI nr
Match:
KAG6579338.1 (hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 225.7 bits (574), Expect = 3.2e-55
Identity = 116/174 (66.67%), Postives = 140/174 (80.46%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
MA GEL+R+F EL D+NEKQE++V YH+ K Q IV GYLI RLF +GISQ S KC++W
Sbjct: 1 MAHGELKRRFKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFIYGISQALSFKCNNW 60
Query: 67 WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
WVIL+LSLL +F+YFLLFLDA T L++ + QLD+ICKELIE CQQ L+ +N+DD+DL +E
Sbjct: 61 WVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDL-VE 120
Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 181
G+ DGFEFGFH+KMLMLDH VGR VYIYF VCAL+AV AIELY KYLLC
Sbjct: 121 AGESRDGFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 173
BLAST of MS006234 vs. NCBI nr
Match:
KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 206.8 bits (525), Expect = 1.5e-49
Identity = 111/175 (63.43%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 9 VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWV 68
+G+LRR F LKDIN+ QE+ +RY E K Q +V GYL RLFFFG+S S KC DWWV
Sbjct: 47 LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVS--FSFKCKDWWV 106
Query: 69 ILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGG 128
IL+L+L +F YFLLF+DA L +T QLD+I KEL E+CQQILVAQNQD+V L+ME G
Sbjct: 107 ILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAG 166
Query: 129 DFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
+ SDGFE FHE+M MLD FR V GRKVYIYF VC L+A+TAIELY K LLCN
Sbjct: 167 EDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219
BLAST of MS006234 vs. ExPASy TrEMBL
Match:
A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)
HSP 1 Score: 343.6 bits (880), Expect = 5.1e-91
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQ SSSKCHDW
Sbjct: 1 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSKCHDW 60
Query: 67 WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME
Sbjct: 61 WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 120
Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
GGDFSDGFEFGFHEKML+LDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Sbjct: 121 GGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175
BLAST of MS006234 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS-KCHD 66
MA+GEL RKF ELKDINEKQESRVRY+E K Q IV GYLI TRLFFFGISQ SSS C D
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60
Query: 67 WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 126
WWVIL+LSLLCSF+YFLLFLDA L++T+ QLD+ICKEL E+ QQILV++NQDDV L+M
Sbjct: 61 WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120
Query: 127 EGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
E G+ S GFEFGFHEKMLMLDHFR VGRKVYIYFTV AL+AVTAIELYVSKY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of MS006234 vs. ExPASy TrEMBL
Match:
A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 7.4e-50
Identity = 111/175 (63.43%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 9 VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWV 68
+G+LRR F LKDIN+ QE+ +RY E K Q +V GYL RLFFFG+S S KC DWWV
Sbjct: 47 LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVS--FSFKCKDWWV 106
Query: 69 ILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGG 128
IL+L+L +F YFLLF+DA L +T QLD+I KEL E+CQQILVAQNQD+V L+ME G
Sbjct: 107 ILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAG 166
Query: 129 DFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
+ SDGFE FHE+M MLD FR V GRKVYIYF VC L+A+TAIELY K LLCN
Sbjct: 167 EDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219
BLAST of MS006234 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 1.7e-49
Identity = 110/178 (61.80%), Postives = 132/178 (74.16%), Query Frame = 0
Query: 7 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS--KCH 66
M GEL+R F LKD+ EKQESRV+YHE++ Q I YLI RLFFF ISQ SSS KC
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60
Query: 67 DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQ-DDVDL 126
DWW++L LS+ C+FVYFL FL+A T LY+ + Q+D+ICKE E+CQQILVA++Q DDVDL
Sbjct: 61 DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120
Query: 127 AMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
AME GD SDGF+F FH K+L FR V RK YI TV AL+AVTAIELY +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178
BLAST of MS006234 vs. ExPASy TrEMBL
Match:
A0A0A0KJZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 2.8e-49
Identity = 114/184 (61.96%), Postives = 133/184 (72.28%), Query Frame = 0
Query: 1 QLGSIVMA-VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNS 60
Q GSI MA +G+LR+ F LK IN+ QE+ +RY E K Q IV GYL RLFFFG S
Sbjct: 72 QSGSIAMAQLGDLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS--F 131
Query: 61 SSKCHDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQD 120
S KC DWWV+LSL+LL +F+Y LLF+DA L +T QL +I KEL E+CQQILVAQNQD
Sbjct: 132 SFKCKDWWVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQD 191
Query: 121 DVDLAMEGGDFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKY 180
VDL+MEGG+ DGFE FHE+M MLD F V GRK YIYF VCAL+ +TAIELY K
Sbjct: 192 TVDLSMEGGECCDGFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKR 251
Query: 181 LLCN 182
LLCN
Sbjct: 252 LLCN 253
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022157176.1 | 1.0e-90 | 98.86 | uncharacterized protein LOC111023953 isoform X2 [Momordica charantia] | [more] |
XP_022157182.1 | 2.1e-67 | 78.41 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
KAG7016840.1 | 1.1e-55 | 66.67 | hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6579338.1 | 3.2e-55 | 66.67 | hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0042579.1 | 1.5e-49 | 63.43 | WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DX74 | 5.1e-91 | 98.86 | uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A6J1DSQ0 | 1.0e-67 | 78.41 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7TMJ1 | 7.4e-50 | 63.43 | WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A6J1DS87 | 1.7e-49 | 61.80 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A0A0KJZ3 | 2.8e-49 | 61.96 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |