MS006234 (gene) Bitter gourd (TR) v1

Overview
NameMS006234
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationscaffold96: 1404454 .. 1404996 (-)
RNA-Seq ExpressionMS006234
SyntenyMS006234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC

mRNA sequence

CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC

Coding sequence (CDS)

CAATTGGGTTCTATTGTTATGGCGGTTGGAGAGTTGAGGAGGAAGTTTGGGGAGCTGAAAGATATTAATGAGAAGCAAGAATCAAGGGTGCGTTACCATGAGGCCAAATTCCAGAAAATCGTTTCTGGATACCTCATTTTAACACGCTTGTTCTTCTTTGGAATCTCCCAGAATTCTTCCTCCAAGTGCCACGATTGGTGGGTCATTCTGTCTTTAAGTCTTTTGTGTAGCTTTGTCTACTTTTTGCTTTTCCTGGATGCTGCCACTAGACTGTATCAGACCAAGGGCCAACTAGACATGATCTGCAAGGAACTAATTGAAGTTTGCCAACAAATTTTGGTAGCCCAAAACCAAGATGATGTGGATCTAGCAATGGAGGGTGGGGATTTTAGTGATGGATTTGAATTCGGTTTCCATGAGAAGATGCTCATGCTTGACCACTTTAGATTTGTTGGGAGGAAAGTTTACATCTACTTCACTGTCTGTGCTTTGGTTGCTGTGACTGCTATTGAGTTATATGTTTCCAAGTATTTGTTGTGCAAC

Protein sequence

QLGSIVMAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Homology
BLAST of MS006234 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
           MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQ SSSKCHDW
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSKCHDW 60

Query: 67  WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
           WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME
Sbjct: 61  WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 120

Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           GGDFSDGFEFGFHEKML+LDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Sbjct: 121 GGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006234 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS-KCHD 66
           MA+GEL RKF ELKDINEKQESRVRY+E K Q IV GYLI TRLFFFGISQ SSS  C D
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60

Query: 67  WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 126
           WWVIL+LSLLCSF+YFLLFLDA   L++T+ QLD+ICKEL E+ QQILV++NQDDV L+M
Sbjct: 61  WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120

Query: 127 EGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           E G+ S GFEFGFHEKMLMLDHFR VGRKVYIYFTV AL+AVTAIELYVSKY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006234 vs. NCBI nr
Match: KAG7016840.1 (hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 118/177 (66.67%), Postives = 142/177 (80.23%), Query Frame = 0

Query: 4   SIVMAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKC 63
           SIVMA GEL+R+  EL D+NEKQE++V YH+ K Q IV GYLI  RLFF+GISQ  S KC
Sbjct: 33  SIVMAHGELKRRIKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFFYGISQALSFKC 92

Query: 64  HDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDL 123
           ++WWVIL+LSLL +F+YFLLFLDA T L++ + QLD+ICKELIE CQQ L+ +N+DD+DL
Sbjct: 93  NNWWVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDL 152

Query: 124 AMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 181
            +E G+  D FEFGFH+KMLMLDH   VGR VYIYF VCAL+AV AIELY  KYLLC
Sbjct: 153 -VEAGESCDRFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 208

BLAST of MS006234 vs. NCBI nr
Match: KAG6579338.1 (hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-55
Identity = 116/174 (66.67%), Postives = 140/174 (80.46%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
           MA GEL+R+F EL D+NEKQE++V YH+ K Q IV GYLI  RLF +GISQ  S KC++W
Sbjct: 1   MAHGELKRRFKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFIYGISQALSFKCNNW 60

Query: 67  WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
           WVIL+LSLL +F+YFLLFLDA T L++ + QLD+ICKELIE CQQ L+ +N+DD+DL +E
Sbjct: 61  WVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDL-VE 120

Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 181
            G+  DGFEFGFH+KMLMLDH   VGR VYIYF VCAL+AV AIELY  KYLLC
Sbjct: 121 AGESRDGFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 173

BLAST of MS006234 vs. NCBI nr
Match: KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-49
Identity = 111/175 (63.43%), Postives = 131/175 (74.86%), Query Frame = 0

Query: 9   VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWV 68
           +G+LRR F  LKDIN+ QE+ +RY E K Q +V GYL   RLFFFG+S   S KC DWWV
Sbjct: 47  LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVS--FSFKCKDWWV 106

Query: 69  ILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGG 128
           IL+L+L  +F YFLLF+DA   L +T  QLD+I KEL E+CQQILVAQNQD+V L+ME G
Sbjct: 107 ILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAG 166

Query: 129 DFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           + SDGFE  FHE+M MLD FR V  GRKVYIYF VC L+A+TAIELY  K LLCN
Sbjct: 167 EDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219

BLAST of MS006234 vs. ExPASy TrEMBL
Match: A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.1e-91
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDW 66
           MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQ SSSKCHDW
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSKCHDW 60

Query: 67  WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 126
           WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME
Sbjct: 61  WVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAME 120

Query: 127 GGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           GGDFSDGFEFGFHEKML+LDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN
Sbjct: 121 GGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006234 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS-KCHD 66
           MA+GEL RKF ELKDINEKQESRVRY+E K Q IV GYLI TRLFFFGISQ SSS  C D
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60

Query: 67  WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 126
           WWVIL+LSLLCSF+YFLLFLDA   L++T+ QLD+ICKEL E+ QQILV++NQDDV L+M
Sbjct: 61  WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120

Query: 127 EGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           E G+ S GFEFGFHEKMLMLDHFR VGRKVYIYFTV AL+AVTAIELYVSKY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006234 vs. ExPASy TrEMBL
Match: A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 7.4e-50
Identity = 111/175 (63.43%), Postives = 131/175 (74.86%), Query Frame = 0

Query: 9   VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSSKCHDWWV 68
           +G+LRR F  LKDIN+ QE+ +RY E K Q +V GYL   RLFFFG+S   S KC DWWV
Sbjct: 47  LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVS--FSFKCKDWWV 106

Query: 69  ILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGG 128
           IL+L+L  +F YFLLF+DA   L +T  QLD+I KEL E+CQQILVAQNQD+V L+ME G
Sbjct: 107 ILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAG 166

Query: 129 DFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           + SDGFE  FHE+M MLD FR V  GRKVYIYF VC L+A+TAIELY  K LLCN
Sbjct: 167 EDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219

BLAST of MS006234 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.7e-49
Identity = 110/178 (61.80%), Postives = 132/178 (74.16%), Query Frame = 0

Query: 7   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNSSS--KCH 66
           M  GEL+R F  LKD+ EKQESRV+YHE++ Q I   YLI  RLFFF ISQ SSS  KC 
Sbjct: 1   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60

Query: 67  DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQ-DDVDL 126
           DWW++L LS+ C+FVYFL FL+A T LY+ + Q+D+ICKE  E+CQQILVA++Q DDVDL
Sbjct: 61  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120

Query: 127 AMEGGDFSDGFEFGFHEKMLMLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 182
           AME GD SDGF+F FH K+L    FR V RK YI  TV AL+AVTAIELY   +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178

BLAST of MS006234 vs. ExPASy TrEMBL
Match: A0A0A0KJZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.8e-49
Identity = 114/184 (61.96%), Postives = 133/184 (72.28%), Query Frame = 0

Query: 1   QLGSIVMA-VGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQNS 60
           Q GSI MA +G+LR+ F  LK IN+ QE+ +RY E K Q IV GYL   RLFFFG S   
Sbjct: 72  QSGSIAMAQLGDLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS--F 131

Query: 61  SSKCHDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQD 120
           S KC DWWV+LSL+LL +F+Y LLF+DA   L +T  QL +I KEL E+CQQILVAQNQD
Sbjct: 132 SFKCKDWWVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQD 191

Query: 121 DVDLAMEGGDFSDGFEFGFHEKMLMLDHFRFV--GRKVYIYFTVCALVAVTAIELYVSKY 180
            VDL+MEGG+  DGFE  FHE+M MLD F  V  GRK YIYF VCAL+ +TAIELY  K 
Sbjct: 192 TVDLSMEGGECCDGFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKR 251

Query: 181 LLCN 182
           LLCN
Sbjct: 252 LLCN 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157176.11.0e-9098.86uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
XP_022157182.12.1e-6778.41uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
KAG7016840.11.1e-5566.67hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579338.13.2e-5566.67hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0042579.11.5e-4963.43WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX745.1e-9198.86uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DSQ01.0e-6778.41uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7TMJ17.4e-5063.43WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1DS871.7e-4961.80uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0KJZ32.8e-4961.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 8..181
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 8..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006234.1MS006234.1mRNA