MS006220 (gene) Bitter gourd (TR) v1

Overview
NameMS006220
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase reverse transcriptase family protein
Locationscaffold96: 1282870 .. 1283025 (+)
RNA-Seq ExpressionMS006220
SyntenyMS006220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTGAAAGGTCGGTATTTTCCTCATGGCACTTTTCTGGATGCATGCCTCGATTGGTCCCCCTCGTTTATCTGGTGGAGTATTCTCTGGGGGCGGGTTCTTCTACAGCGGGGTCTTCGTTTGCAGGTCGGTAATGGGGAGTCGATTCCGATTTAT

mRNA sequence

GTGTTGAAAGGTCGGTATTTTCCTCATGGCACTTTTCTGGATGCATGCCTCGATTGGTCCCCCTCGTTTATCTGGTGGAGTATTCTCTGGGGGCGGGTTCTTCTACAGCGGGGTCTTCGTTTGCAGGTCGGTAATGGGGAGTCGATTCCGATTTAT

Coding sequence (CDS)

GTGTTGAAAGGTCGGTATTTTCCTCATGGCACTTTTCTGGATGCATGCCTCGATTGGTCCCCCTCGTTTATCTGGTGGAGTATTCTCTGGGGGCGGGTTCTTCTACAGCGGGGTCTTCGTTTGCAGGTCGGTAATGGGGAGTCGATTCCGATTTAT

Protein sequence

VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
Homology
BLAST of MS006220 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           VLKGRYF   +F++A +  +PS+IW SILWGR LL++GLR ++GNG+S+ IY
Sbjct: 677 VLKGRYFKDCSFMEAKISGNPSYIWRSILWGRDLLKKGLRWRIGNGDSVFIY 728

BLAST of MS006220 vs. NCBI nr
Match: XP_024043257.1 (uncharacterized protein LOC112099952 [Citrus clementina])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           VLK RYF HG  ++A L   PSFIW S+LWGR ++Q+G R ++GNGE++ +Y
Sbjct: 788 VLKARYFKHGGIMNARLGSKPSFIWRSVLWGRQVIQQGSRWRIGNGENVKVY 839

BLAST of MS006220 vs. NCBI nr
Match: XP_013654036.2 (uncharacterized protein LOC106358780 [Brassica napus])

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 2   LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           LK RYFP+G+FL A L   PSF W SIL+GR LL +GLRL VGNG SI ++
Sbjct: 792 LKSRYFPNGSFLPASLGSRPSFAWRSILFGRELLSKGLRLMVGNGSSISVW 842

BLAST of MS006220 vs. NCBI nr
Match: XP_013709208.1 (uncharacterized protein LOC106412876 [Brassica napus])

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 2   LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           LK RYFP+G+FL A L   PSF W SIL+GR LL +GLRL VGNG SI ++
Sbjct: 555 LKSRYFPNGSFLPASLGSRPSFAWRSILFGRELLSKGLRLMVGNGSSISVW 605

BLAST of MS006220 vs. NCBI nr
Match: XP_030479464.1 (uncharacterized protein LOC115696715 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1    VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI 50
            VLK +YF H TFLDA L  +PSF W S+LWGR LL++GL  +VGNGE+I
Sbjct: 1353 VLKAKYFHHSTFLDADLGHTPSFTWRSVLWGRDLLKKGLLWKVGNGETI 1401

BLAST of MS006220 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.0e-06
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG 47
           +L+ RYFPH + ++  +   PS+ W SI+ GR LL RGL   +G+G
Sbjct: 88  LLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDG 133

BLAST of MS006220 vs. ExPASy TrEMBL
Match: A0A1S8ABR9 (RNA-directed DNA polymerase reverse transcriptase family protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.2e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           +LK +YF H +F+DA L   PSF+W SILWGR +L +GLR ++GNG  I IY
Sbjct: 80  ILKAKYFKHTSFMDAKLGSQPSFVWRSILWGRQVLHKGLRWRIGNGRQISIY 131

BLAST of MS006220 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.2e-10
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           VLKGRYF   +F++A +  +PS+IW SILWGR LL++GLR ++GNG+S+ IY
Sbjct: 677 VLKGRYFKDCSFMEAKISGNPSYIWRSILWGRDLLKKGLRWRIGNGDSVFIY 728

BLAST of MS006220 vs. ExPASy TrEMBL
Match: A0A803QE78 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1    VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI 50
            VLK +YF H TFLDA L  +PSF W S+LWGR LL++GL  +VGNGE+I
Sbjct: 1249 VLKAKYFHHSTFLDADLGHTPSFTWRSVLWGRDLLKKGLLWKVGNGETI 1297

BLAST of MS006220 vs. ExPASy TrEMBL
Match: A0A6P5S4Z4 (uncharacterized protein LOC110752263 OS=Prunus avium OX=42229 GN=LOC110752263 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-09
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY 53
           + + RYFP GT LDA +   PSF+W S+LWGR LL  GLR +VGNG  I IY
Sbjct: 75  IFRARYFPGGTVLDADVGVYPSFVWRSLLWGRELLMAGLRWRVGNGLQISIY 126

BLAST of MS006220 vs. ExPASy TrEMBL
Match: A0A803QCJ0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-09
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI 50
           VLK +YF H TFLDA    SPSF W SI+WGR LL++GL  +VGNGE+I
Sbjct: 757 VLKAKYFHHSTFLDAGHGHSPSFTWLSIIWGRDLLKKGLLWKVGNGETI 805

BLAST of MS006220 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.9e-07
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 1   VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG 47
           +L+ RYFPH + ++  +   PS+ W SI+ GR LL RGL   +G+G
Sbjct: 88  LLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDG 133

BLAST of MS006220 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.3e-04
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 2  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPI 52
          +K RYF   + LDA +    S+ W S+L G  LL++G R  +G+G++I I
Sbjct: 1  MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150918.11.7e-0957.69uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_024043257.12.9e-0953.85uncharacterized protein LOC112099952 [Citrus clementina][more]
XP_013654036.23.8e-0962.75uncharacterized protein LOC106358780 [Brassica napus][more]
XP_013709208.13.8e-0962.75uncharacterized protein LOC106412876 [Brassica napus][more]
XP_030479464.14.9e-0963.27uncharacterized protein LOC115696715 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
P932954.0e-0643.48Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A1S8ABR98.2e-1055.77RNA-directed DNA polymerase reverse transcriptase family protein (Fragment) OS=C... [more]
A0A6J1DAR48.2e-1057.69uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A803QE782.4e-0963.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6P5S4Z46.9e-0957.69uncharacterized protein LOC110752263 OS=Prunus avium OX=42229 GN=LOC110752263 PE... [more]
A0A803QCJ06.9e-0963.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00310.12.9e-0743.48RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G09510.11.3e-0440.00Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006220.1MS006220.1mRNA