![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS005969 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGATCGTGTCCGCCCACGTGCAGATCCAAGTGCGGCCGGTGCTGGCCCTGCGACCCGGTCCACGTCCCAATTCAACCCGGTCTAAGCTTTCCATTGGAGTATTACCCAGAAGCTTGGCGATGTAAGTGCGGGAACAACCTCTTCATGCCT GGATCGTGTCCGCCCACGTGCAGATCCAAGTGCGGCCGGTGCTGGCCCTGCGACCCGGTCCACGTCCCAATTCAACCCGGTCTAAGCTTTCCATTGGAGTATTACCCAGAAGCTTGGCGATGTAAGTGCGGGAACAACCTCTTCATGCCT GGATCGTGTCCGCCCACGTGCAGATCCAAGTGCGGCCGGTGCTGGCCCTGCGACCCGGTCCACGTCCCAATTCAACCCGGTCTAAGCTTTCCATTGGAGTATTACCCAGAAGCTTGGCGATGTAAGTGCGGGAACAACCTCTTCATGCCT GSCPPTCRSKCGRCWPCDPVHVPIQPGLSFPLEYYPEAWRCKCGNNLFMP Homology
BLAST of MS005969 vs. NCBI nr
Match: XP_030508149.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Cannabis sativa] >KAF4352870.1 hypothetical protein F8388_002060 [Cannabis sativa] >KAF4389225.1 hypothetical protein G4B88_003038 [Cannabis sativa]) HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22 Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of MS005969 vs. NCBI nr
Match: XP_038905188.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida]) HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22 Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of MS005969 vs. NCBI nr
Match: KAG6597420.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of MS005969 vs. NCBI nr
Match: XP_021606945.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Manihot esculenta] >OAY55695.1 hypothetical protein MANES_03G173400v8 [Manihot esculenta]) HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21 Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of MS005969 vs. NCBI nr
Match: RWR93141.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cinnamomum micranthum f. kanehirae]) HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21 Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 1.2e-23 Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.6e-20 Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18 Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.6e-07 Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0
BLAST of MS005969 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 6.0e-07 Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0
BLAST of MS005969 vs. ExPASy TrEMBL
Match: A0A7J6E4U4 (Epidermal patterning factor-like protein OS=Cannabis sativa OX=3483 GN=F8388_002060 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22 Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy TrEMBL
Match: A0A3S3P4G4 (Epidermal patterning factor-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02237700 PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.0e-22 Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy TrEMBL
Match: A0A2C9W8D5 (Epidermal patterning factor-like protein OS=Manihot esculenta OX=3983 GN=MANES_03G173400 PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.0e-22 Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy TrEMBL
Match: A0A067L843 (Epidermal patterning factor-like protein OS=Jatropha curcas OX=180498 GN=JCGZ_02227 PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21 Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of MS005969 vs. ExPASy TrEMBL
Match: B9RTK3 (Epidermal patterning factor-like protein OS=Ricinus communis OX=3988 GN=RCOM_0911080 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21 Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of MS005969 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 109.4 bits (272), Expect = 8.6e-25 Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of MS005969 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 99.0 bits (245), Expect = 1.2e-21 Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 0
BLAST of MS005969 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 92.8 bits (229), Expect = 8.3e-20 Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0
BLAST of MS005969 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 92.8 bits (229), Expect = 8.3e-20 Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0
BLAST of MS005969 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 43.9 bits (102), Expect = 4.4e-05 Identity = 21/47 (44.68%), Postives = 24/47 (51.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|