MS005753 (gene) Bitter gourd (TR) v1

Overview
NameMS005753
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAbhydrolase_3 domain-containing protein
Locationscaffold254: 1375641 .. 1375799 (+)
RNA-Seq ExpressionMS005753
SyntenyMS005753
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCCGGCGGGAACATCACGTCCAACGCAGCTTTACGAGCACTGGATTCCGATCTCTCGCCACTGAAAATCGTGGGGCATATATTTAATCAGCCGTTTTTCAACCGAACCCAACGGACGGAATCGGAGCTCCGATCGGTGGACGACCAGATTTACCCT

mRNA sequence

AGCTCCGGCGGGAACATCACGTCCAACGCAGCTTTACGAGCACTGGATTCCGATCTCTCGCCACTGAAAATCGTGGGGCATATATTTAATCAGCCGTTTTTCAACCGAACCCAACGGACGGAATCGGAGCTCCGATCGGTGGACGACCAGATTTACCCT

Coding sequence (CDS)

AGCTCCGGCGGGAACATCACGTCCAACGCAGCTTTACGAGCACTGGATTCCGATCTCTCGCCACTGAAAATCGTGGGGCATATATTTAATCAGCCGTTTTTCAACCGAACCCAACGGACGGAATCGGAGCTCCGATCGGTGGACGACCAGATTTACCCT

Protein sequence

SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP
Homology
BLAST of MS005753 vs. NCBI nr
Match: KAG6582576.1 (putative carboxylesterase 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGNIT  AALRALDSDLSP+KIVGHI+NQPFF   +RTESELR V+D+I P
Sbjct: 144 SAGGNITFYAALRALDSDLSPVKIVGHIYNQPFFGGIKRTESELRCVNDRILP 196

BLAST of MS005753 vs. NCBI nr
Match: XP_022924288.1 (probable carboxylesterase 8 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGNIT  AALRALDSDLSP+KIVGHI+NQPFF   +RTESELR V+D+I P
Sbjct: 180 SAGGNITFYAALRALDSDLSPVKIVGHIYNQPFFGGIKRTESELRCVNDRILP 232

BLAST of MS005753 vs. NCBI nr
Match: XP_023526606.1 (probable carboxylesterase 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGNIT  AALRALDSDLSP+KIVGHI+NQPFF   +RTESELR V+D+I P
Sbjct: 180 SAGGNITFYAALRALDSDLSPVKIVGHIYNQPFFGGIKRTESELRCVNDRILP 232

BLAST of MS005753 vs. NCBI nr
Match: XP_022035842.2 (probable carboxylesterase 8 [Helianthus annuus])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNIT NA LRALD DL+P+KIVG I NQPFF+  +RTESELR  DD+I P
Sbjct: 170 SSGGNITYNAGLRALDLDLNPIKIVGLIMNQPFFSGVERTESELRLFDDRIIP 222

BLAST of MS005753 vs. NCBI nr
Match: KAF5811709.1 (putative carboxylesterase [Helianthus annuus])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNIT NA LRALD DL+P+KIVG I NQPFF+  +RTESELR  DD+I P
Sbjct: 186 SSGGNITYNAGLRALDLDLNPIKIVGLIMNQPFFSGVERTESELRLFDDRIIP 238

BLAST of MS005753 vs. ExPASy Swiss-Prot
Match: O64640 (Probable carboxylesterase 8 OS=Arabidopsis thaliana OX=3702 GN=CXE8 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI  N ALR +D+DLSP+KI G I NQ FF   + ++SE R  DD+I P
Sbjct: 161 SSGGNIVYNVALRVVDTDLSPVKIQGLIMNQAFFGGVEPSDSESRLKDDKICP 213

BLAST of MS005753 vs. ExPASy Swiss-Prot
Match: A0A0A1EQ07 (3-O-acetylpapaveroxine carboxylesterase CXE2 OS=Papaver somniferum OX=3469 GN=CXE2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-08
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI  +A+LRA++ DL P+ I G I + PFF   QRTES+L+ ++DQ  P
Sbjct: 158 SSGGNIAYHASLRAIEMDLEPVIINGLILHSPFFGSLQRTESDLKVINDQDLP 210

BLAST of MS005753 vs. ExPASy Swiss-Prot
Match: Q9LVB8 (Probable carboxylesterase 120 OS=Arabidopsis thaliana OX=3702 GN=CXE20 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-08
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1   SSGGNITSNAALRALD--SDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGN+  N  LR++D  SDLSPL+I G I + PFF   +R+ESE+R ++DQ+ P
Sbjct: 166 SAGGNLAYNVGLRSVDSVSDLSPLQIRGLILHHPFFGGEERSESEIRLMNDQVCP 220

BLAST of MS005753 vs. ExPASy Swiss-Prot
Match: O64641 (Probable carboxylesterase 9 OS=Arabidopsis thaliana OX=3702 GN=CXE9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-07
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+G NI    ALR+LD DL+PL+I G +F QP F    RT+SEL++  D + P
Sbjct: 171 SNGANIAFQLALRSLDHDLTPLQIDGCVFYQPLFGGKTRTKSELKNFADPVMP 223

BLAST of MS005753 vs. ExPASy Swiss-Prot
Match: I3PLR2 (3-O-acetylpapaveroxine carboxylesterase CXE1 OS=Papaver somniferum OX=3469 GN=CXE1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-06
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSG N+  +A+LRA++ DL P KI G I + PFF   +RTES+ + +++Q  P
Sbjct: 158 SSGANVAYHASLRAIEMDLEPAKINGLILHCPFFGSLERTESDSKVINNQDLP 210

BLAST of MS005753 vs. ExPASy TrEMBL
Match: A0A6J1EC01 (probable carboxylesterase 8 OS=Cucurbita moschata OX=3662 GN=LOC111431817 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGNIT  AALRALDSDLSP+KIVGHI+NQPFF   +RTESELR V+D+I P
Sbjct: 180 SAGGNITFYAALRALDSDLSPVKIVGHIYNQPFFGGIKRTESELRCVNDRILP 232

BLAST of MS005753 vs. ExPASy TrEMBL
Match: A0A6S7KZY3 (Abhydrolase_3 domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2183 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-11
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI  NA LRALD DL+P+KIVG I NQPFF   +RTESELR V+D+I P
Sbjct: 169 SSGGNIAYNAGLRALDLDLNPIKIVGLIMNQPFFGGVKRTESELRLVNDRIVP 221

BLAST of MS005753 vs. ExPASy TrEMBL
Match: A0A2J6LMJ1 (Abhydrolase_3 domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_7X6341 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-11
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI  NA LRALD DL+P+KIVG I NQPFF   +RTESELR V+D+I P
Sbjct: 169 SSGGNIAYNAGLRALDLDLNPIKIVGLIMNQPFFGGVKRTESELRLVNDRIVP 221

BLAST of MS005753 vs. ExPASy TrEMBL
Match: A0A5B7BFL5 (Putative Gibberellin receptor GID1 OS=Davidia involucrata OX=16924 GN=Din_036439 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI   A LRALD DLSP KIVG I NQP+F   QRTESELR +DD+I P
Sbjct: 158 SSGGNIAYTAGLRALDIDLSPAKIVGLILNQPYFGGVQRTESELRLIDDRIVP 210

BLAST of MS005753 vs. ExPASy TrEMBL
Match: A0A5N6M5D5 (Abhydrolase_3 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_37060 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNIT N  L ALD DL+P+KIVG I NQPFF+  +RT+SELRSV+D I P
Sbjct: 169 SSGGNITYNTGLSALDLDLNPIKIVGLIMNQPFFSGVERTDSELRSVNDPIVP 221

BLAST of MS005753 vs. TAIR 10
Match: AT2G45600.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-10
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           SSGGNI  N ALR +D+DLSP+KI G I NQ FF   + ++SE R  DD+I P
Sbjct: 161 SSGGNIVYNVALRVVDTDLSPVKIQGLIMNQAFFGGVEPSDSESRLKDDKICP 213

BLAST of MS005753 vs. TAIR 10
Match: AT5G62180.1 (carboxyesterase 20 )

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-09
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1   SSGGNITSNAALRALD--SDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+GGN+  N  LR++D  SDLSPL+I G I + PFF   +R+ESE+R ++DQ+ P
Sbjct: 166 SAGGNLAYNVGLRSVDSVSDLSPLQIRGLILHHPFFGGEERSESEIRLMNDQVCP 220

BLAST of MS005753 vs. TAIR 10
Match: AT2G45610.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-08
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQIYP 54
           S+G NI    ALR+LD DL+PL+I G +F QP F    RT+SEL++  D + P
Sbjct: 171 SNGANIAFQLALRSLDHDLTPLQIDGCVFYQPLFGGKTRTKSELKNFADPVMP 223

BLAST of MS005753 vs. TAIR 10
Match: AT5G27320.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.0e-04
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELR 46
           SSGGNI  N A+RA++S +    ++G+I   P F  T+RTESE R
Sbjct: 189 SSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKR 230

BLAST of MS005753 vs. TAIR 10
Match: AT1G68620.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.0e-04
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0

Query: 1   SSGGNITSNAALRALDSDLSPLKIVGHIFNQPFFNRTQRTESELRSVDDQ 51
           S+GGNI    A R    +   LKI G I  QPF++  +RTESE R  +D+
Sbjct: 176 SAGGNIAQQVAARLASPEDLALKIEGTILIQPFYSGEERTESERRVGNDK 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6582576.19.8e-1375.47putative carboxylesterase 8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022924288.19.8e-1375.47probable carboxylesterase 8 [Cucurbita moschata][more]
XP_023526606.19.8e-1375.47probable carboxylesterase 8 [Cucurbita pepo subsp. pepo][more]
XP_022035842.23.1e-1171.70probable carboxylesterase 8 [Helianthus annuus][more]
KAF5811709.13.1e-1171.70putative carboxylesterase [Helianthus annuus][more]
Match NameE-valueIdentityDescription
O646405.2e-0956.60Probable carboxylesterase 8 OS=Arabidopsis thaliana OX=3702 GN=CXE8 PE=2 SV=1[more]
A0A0A1EQ072.0e-0852.833-O-acetylpapaveroxine carboxylesterase CXE2 OS=Papaver somniferum OX=3469 GN=CX... [more]
Q9LVB84.4e-0850.91Probable carboxylesterase 120 OS=Arabidopsis thaliana OX=3702 GN=CXE20 PE=2 SV=1[more]
O646414.9e-0749.06Probable carboxylesterase 9 OS=Arabidopsis thaliana OX=3702 GN=CXE9 PE=2 SV=1[more]
I3PLR22.4e-0645.283-O-acetylpapaveroxine carboxylesterase CXE1 OS=Papaver somniferum OX=3469 GN=CX... [more]
Match NameE-valueIdentityDescription
A0A6J1EC014.7e-1375.47probable carboxylesterase 8 OS=Cucurbita moschata OX=3662 GN=LOC111431817 PE=4 S... [more]
A0A6S7KZY39.9e-1169.81Abhydrolase_3 domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCU... [more]
A0A2J6LMJ19.9e-1169.81Abhydrolase_3 domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_7X6341... [more]
A0A5B7BFL51.3e-1069.81Putative Gibberellin receptor GID1 OS=Davidia involucrata OX=16924 GN=Din_036439... [more]
A0A5N6M5D51.7e-1067.92Abhydrolase_3 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_... [more]
Match NameE-valueIdentityDescription
AT2G45600.13.7e-1056.60alpha/beta-Hydrolases superfamily protein [more]
AT5G62180.13.1e-0950.91carboxyesterase 20 [more]
AT2G45610.13.5e-0849.06alpha/beta-Hydrolases superfamily protein [more]
AT5G27320.11.0e-0448.89alpha/beta-Hydrolases superfamily protein [more]
AT1G68620.13.0e-0444.00alpha/beta-Hydrolases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 1..53
e-value: 6.4E-7
score: 31.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005753.1MS005753.1mRNA