MS005692 (gene) Bitter gourd (TR) v1

Overview
NameMS005692
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein phosphatase 2C 29-like
Locationscaffold254: 861401 .. 861646 (+)
RNA-Seq ExpressionMS005692
SyntenyMS005692
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAACAGCACCTGGAAGGAATGAACCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCACAACCAGAATCAGCTCTTTCTTCCAAGCGATCGTCTGGAAAGCTTAGTAGTGAGAACCTCAATCTGGTAAACAACGGGGTAGGCCACAATCTGGTGGAAGGGAAAGAATCCGATGTAGAGAAATATAGATCTGAGCTGATCTCTATTTCCTTCCTTGAATCACCACCTGAC

mRNA sequence

ATGGATATAACAGCACCTGGAAGGAATGAACCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCACAACCAGAATCAGCTCTTTCTTCCAAGCGATCGTCTGGAAAGCTTAGTAGTGAGAACCTCAATCTGGTAAACAACGGGGTAGGCCACAATCTGGTGGAAGGGAAAGAATCCGATGTAGAGAAATATAGATCTGAGCTGATCTCTATTTCCTTCCTTGAATCACCACCTGAC

Coding sequence (CDS)

ATGGATATAACAGCACCTGGAAGGAATGAACCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCACAACCAGAATCAGCTCTTTCTTCCAAGCGATCGTCTGGAAAGCTTAGTAGTGAGAACCTCAATCTGGTAAACAACGGGGTAGGCCACAATCTGGTGGAAGGGAAAGAATCCGATGTAGAGAAATATAGATCTGAGCTGATCTCTATTTCCTTCCTTGAATCACCACCTGAC

Protein sequence

MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGKESDVEKYRSELISISFLESPPD
Homology
BLAST of MS005692 vs. NCBI nr
Match: KAG6582528.1 (hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG N+PEEVTRESLIAISY +PE+ LSSKRSSGKLSSENLNLV NG+ HNLVEGK
Sbjct: 1  MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLV-NGIDHNLVEGK 60

Query: 61 ESDVEKYRSELISISFLESPPD 83
          E DVEKYRSELI+ISFLESPP+
Sbjct: 61 EYDVEKYRSELIAISFLESPPE 81

BLAST of MS005692 vs. NCBI nr
Match: KAG7018913.1 (hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG N+PEEVTRESLIAISY +PE+ LSSKRSSGKLSSENLNLV NG+ HNLVEGK
Sbjct: 1  MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLV-NGIDHNLVEGK 60

Query: 61 ESDVEKYRSELISISFLESPPD 83
          E DVEKYRSELI+ISFLESPP+
Sbjct: 61 EYDVEKYRSELIAISFLESPPE 81

BLAST of MS005692 vs. NCBI nr
Match: KAA0049081.1 (hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK17482.1 hypothetical protein E5676_scaffold434G003470 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PGRN PEEVTRESLI+ISY +PE+ LSSKR S KLSSEN+NL  NG+ HN VEGK
Sbjct: 1  MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLA-NGINHNQVEGK 60

Query: 61 ESD-VEKYRSELISISFLESPPD 83
          E D  EK+RSELI+ISFLES P+
Sbjct: 61 EYDGDEKFRSELIAISFLESLPE 82

BLAST of MS005692 vs. NCBI nr
Match: KAG6597232.1 (DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG+N  EEVTRESLIAISYS+PESALSSKR SGKL+S+NL         NLVEGK
Sbjct: 1  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL---------NLVEGK 60

Query: 61 ESDV-EKYRSELISISFLESPPD 83
          E D  EKYRSELISISFLESPP+
Sbjct: 61 EFDADEKYRSELISISFLESPPE 74

BLAST of MS005692 vs. NCBI nr
Match: XP_022963288.1 (uncharacterized protein LOC111463263 [Cucurbita moschata])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG+N  EEVTRESLIAISYS+PESALSSKR SGKL+S+NL         NLVEGK
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL---------NLVEGK 84

Query: 61 ESDV-EKYRSELISISFLESPPD 83
          E D  EKYRSELISISFLESPP+
Sbjct: 85 EFDADEKYRSELISISFLESPPE 98

BLAST of MS005692 vs. ExPASy TrEMBL
Match: A0A5A7U641 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003470 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.3e-21
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PGRN PEEVTRESLI+ISY +PE+ LSSKR S KLSSEN+NL  NG+ HN VEGK
Sbjct: 1  MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLA-NGINHNQVEGK 60

Query: 61 ESD-VEKYRSELISISFLESPPD 83
          E D  EK+RSELI+ISFLES P+
Sbjct: 61 EYDGDEKFRSELIAISFLESLPE 82

BLAST of MS005692 vs. ExPASy TrEMBL
Match: A0A6J1HHB9 (uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC111463263 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.2e-20
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG+N  EEVTRESLIAISYS+PESALSSKR SGKL+S+NL         NLVEGK
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL---------NLVEGK 84

Query: 61 ESDV-EKYRSELISISFLESPPD 83
          E D  EKYRSELISISFLESPP+
Sbjct: 85 EFDADEKYRSELISISFLESPPE 98

BLAST of MS005692 vs. ExPASy TrEMBL
Match: A0A6J1IHW2 (uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MDIT PG+N  EEVTRESLIAISYS+PESALSSKR SGKL+S+NL         NLVEGK
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL---------NLVEGK 84

Query: 61 ESDV-EKYRSELISISFLESPPD 83
          E D  EKYRSELI+ISFLESPP+
Sbjct: 85 EFDADEKYRSELIAISFLESPPE 98

BLAST of MS005692 vs. ExPASy TrEMBL
Match: A0A0A0L967 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-18
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MD T PGRN PEEVTRESLI+ISY +PE+ LSS + S K+S EN+NL  NG+ HN +EGK
Sbjct: 1  MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLA-NGINHNQMEGK 60

Query: 61 ESD-VEKYRSELISISFLESPPD 83
          E D  EK+RSELI+ISFLES P+
Sbjct: 61 EYDGDEKFRSELIAISFLESLPE 82

BLAST of MS005692 vs. ExPASy TrEMBL
Match: W9RTT6 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023870 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.9e-10
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  MDITAPGRNEPEEVTRESLIAISYSQPESALSSKRSSGKLSSENLNLVNNGVGHNLVEGK 60
          MD TAP +  PEEVTRESLI+ISYS PE+ L+SK SS KL+           G NLV G 
Sbjct: 1  MDKTAPEKEVPEEVTRESLISISYSLPENVLTSKPSSDKLN-----------GENLVGGI 60

Query: 61 ESDVE-KYRSELISISFLESP 81
          + D E K+RSELISIS+ +SP
Sbjct: 61 DCDGEDKFRSELISISYTQSP 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6582528.13.7e-2784.15hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018913.13.7e-2784.15hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0049081.11.5e-2073.49hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK174... [more]
KAG6597232.11.3e-1974.70DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022963288.11.3e-1974.70uncharacterized protein LOC111463263 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6417.3e-2173.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1HHB96.2e-2074.70uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A6J1IHW21.4e-1973.49uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815... [more]
A0A0A0L9673.4e-1866.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1[more]
W9RTT69.9e-1056.79Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35282F5D14.24 PROTEINcoord: 1..80
NoneNo IPR availablePANTHERPTHR35282:SF2F5D14.24 PROTEINcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005692.1MS005692.1mRNA