MS005452 (gene) Bitter gourd (TR) v1

Overview


Name	MS005452
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LSD1 zinc finger family protein
Location	scaffold641: 335624 .. 336451 (+)
RNA-Seq Expression	MS005452
Synteny	MS005452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCAGCTGCACAAAGCCAGCTGGTGTGCTCCGGATGCAGAAACCTTTTGCTTTATCCAGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGTATATTCATTCTTCCTCTTCTTCTTCTTTGTCTCCCTTTTTCGGATTTCTACTTTCAACCTGAAAATGAATAGTACAAGTGCGGTAGGGAATTCTGTTCTTTTTCTTTAGAAGAAAGATTATGAGTTTTAGTTGCTTTTATGTGTAAACAGGCACAGAAATGGCACAATTGGTGTGTGGGGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACAAGCGTACAATGTTCTTGTTGCCATACCGTCAACTTAGCTTTGGAAGGTATAGAGATATAACTATTGTCGAGTGCGATTCTTAGTCATCTCGAACAAATCTTAGTAACTTTACAAATCTCGAACAAATCTTGGTAAGTTGCTCGGGATGCCTAGAACAACTCCTAACTAGTTCCCATCATAAATAGCAGCATTATGTTGTTGCATATGTTATAGGTAACTATTGATTCTCTATTCACCAAAGAGCATATATTCGCTTCGGTTCTTCTGAGAATAGTTTGGAGCTGCGGATCTTGGTTTTCTAAGGCATAAACTCATGTGAATTTAGCATCAAATGTGTACTGGTGCAGCGAATCAGGTGGCGCACGTCAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGCGCGCGCTCGGTGAAGTGTGCAGTATGCAATTTTGTGACATCAGTTGGGGTCAGTATAAAACTTCATTTTTGTTCGTTA

mRNA sequence

TCTTCAGCTGCACAAAGCCAGCTGGTGTGCTCCGGATGCAGAAACCTTTTGCTTTATCCAGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGTGGGGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACAAGCGTACAATGTTCTTGTTGCCATACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTCAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGCGCGCGCTCGGTGAAGTGTGCAGTATGCAATTTTGTGACATCAGTTGGGGTCAGTATAAAACTTCATTTTTGTTCGTTA

Coding sequence (CDS)

TCTTCAGCTGCACAAAGCCAGCTGGTGTGCTCCGGATGCAGAAACCTTTTGCTTTATCCAGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGTGGGGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACAAGCGTACAATGTTCTTGTTGCCATACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTCAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGCGCGCGCTCGGTGAAGTGTGCAGTATGCAATTTTGTGACATCAGTTGGGGTCAGTATAAAACTTCATTTTTGTTCGTTA

Protein sequence

SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLHFCSL

Homology

[Close]

BLAST of MS005452 vs. NCBI nr
Match: XP_021670378.1 (protein LOL1 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 237.7 bits (605), Expect = 5.6e-59
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 19  ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 78

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKL 120
           GATSVQCSCCHT+NLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG SI  
Sbjct: 79  GATSVQCSCCHTINLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASINK 138

Query: 121 HF 123
           H+
Sbjct: 139 HY 140

[Close]

BLAST of MS005452 vs. NCBI nr
Match: OMO93183.1 (Zinc finger, LSD1-type [Corchorus olitorius])

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-59
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 2   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 61

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 62  GATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 118

[Close]

BLAST of MS005452 vs. NCBI nr
Match: XP_022155960.1 (protein LOL1 [Momordica charantia] >XP_022155969.1 protein LOL1 [Momordica charantia] >XP_022155974.1 protein LOL1 [Momordica charantia] >XP_022155980.1 protein LOL1 [Momordica charantia])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++AAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  ANAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG+S
Sbjct: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMS 136

[Close]

BLAST of MS005452 vs. NCBI nr
Match: XP_038887481.1 (protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform X1 [Benincasa hispida])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++A QSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  ANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKL 120
           GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGV +  
Sbjct: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVDVNE 139

Query: 121 H 122
           H
Sbjct: 140 H 140

[Close]

BLAST of MS005452 vs. NCBI nr
Match: TXG54321.1 (hypothetical protein EZV62_019577 [Acer yangbiense])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 19  ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 78

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKL 120
           GATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVS+  
Sbjct: 79  GATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSLNK 138

Query: 121 HF 123
            +
Sbjct: 139 RY 140

[Close]

BLAST of MS005452 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-59
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 88  GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of MS005452 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-57
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 2   SAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 61
           + AQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTEMAQLVCGGCHTLLMYIRG
Sbjct: 60  NGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRG 119

Query: 62  ATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           ATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 120 ATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 175

[Close]

BLAST of MS005452 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.7e-39
Identity = 73/118 (61.86%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 5   QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 64
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 65  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLH 122
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ G++   H
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRH 119

[Close]

BLAST of MS005452 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.6e-38
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 5   QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 64
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 65  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ G++
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMN 116

[Close]

BLAST of MS005452 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-34
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 5   QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 64
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 65  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 118
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of MS005452 vs. ExPASy TrEMBL
Match: A0A1R3JED2 (Zinc finger, LSD1-type OS=Corchorus olitorius OX=93759 GN=COLO4_17064 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.6e-59
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 2   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 61

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 62  GATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 118

[Close]

BLAST of MS005452 vs. ExPASy TrEMBL
Match: A0A6J1DRW1 (protein LOL1 OS=Momordica charantia OX=3673 GN=LOC111022949 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.9e-59
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++AAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  ANAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG+S
Sbjct: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMS 136

[Close]

BLAST of MS005452 vs. ExPASy TrEMBL
Match: A0A5C7HBP8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019577 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 19  ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 78

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKL 120
           GATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVS+  
Sbjct: 79  GATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSLNK 138

Query: 121 HF 123
            +
Sbjct: 139 RY 140

[Close]

BLAST of MS005452 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           S+A QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG+S
Sbjct: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMS 136

[Close]

BLAST of MS005452 vs. ExPASy TrEMBL
Match: M1BH58 (LOL1 (LSD ONE LIKE 1) OS=Solanum tuberosum OX=4113 GN=102593263 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           ++  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  NAGTQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK 120
           GATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK
Sbjct: 80  GATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK 138

[Close]

BLAST of MS005452 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-60
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 88  GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of MS005452 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-60
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 177

[Close]

BLAST of MS005452 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-60
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 60
           S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 61  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS 118
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 88  GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of MS005452 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-35
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 5   QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 64
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 65  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 118
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of MS005452 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-35
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 5   QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 64
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 65  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 118
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of MS005452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021670378.1	5.6e-59	92.62	protein LOL1 isoform X2 [Hevea brasiliensis]	[more]
OMO93183.1	9.5e-59	98.29	Zinc finger, LSD1-type [Corchorus olitorius]	[more]
XP_022155960.1	1.6e-58	97.44	protein LOL1 [Momordica charantia] >XP_022155969.1 protein LOL1 [Momordica chara...	[more]
XP_038887481.1	1.6e-58	93.39	protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform...	[more]
TXG54321.1	2.1e-58	92.62	hypothetical protein EZV62_019577 [Acer yangbiense]	[more]

BLAST of MS005452 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	3.4e-59	94.02	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	1.9e-57	91.38	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	6.7e-39	61.86	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	9.6e-38	62.61	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	1.7e-34	58.87	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of MS005452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3JED2	4.6e-59	98.29	Zinc finger, LSD1-type OS=Corchorus olitorius OX=93759 GN=COLO4_17064 PE=4 SV=1	[more]
A0A6J1DRW1	7.9e-59	97.44	protein LOL1 OS=Momordica charantia OX=3673 GN=LOC111022949 PE=4 SV=1	[more]
A0A5C7HBP8	1.0e-58	92.62	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019577 PE=4 SV=1	[more]
A0A0A0LEE4	1.0e-58	97.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
M1BH58	1.0e-58	94.96	LOL1 (LSD ONE LIKE 1) OS=Solanum tuberosum OX=4113 GN=102593263 PE=4 SV=1	[more]

BLAST of MS005452 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	2.4e-60	94.02	lsd one like 1	[more]
AT1G32540.1	2.4e-60	94.02	lsd one like 1	[more]
AT1G32540.3	2.4e-60	94.02	lsd one like 1	[more]
AT4G20380.2	1.2e-35	58.87	LSD1 zinc finger family protein	[more]
AT4G20380.1	1.2e-35	58.87	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 7..37 e-value: 7.6E-13 score: 45.8 coord: 84..114 e-value: 1.4E-11 score: 41.8 coord: 46..75 e-value: 6.8E-15 score: 52.4
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 49..73 e-value: 1.2E-12 score: 47.4 coord: 87..111 e-value: 6.6E-13 score: 48.2 coord: 10..34 e-value: 6.8E-11 score: 41.8
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 2..118
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 2..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005452.1	MS005452.1	mRNA