MS005446 (gene) Bitter gourd (TR) v1

Overview


Name	MS005446
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glycine cleavage system H protein
Location	scaffold641: 272136 .. 274030 (+)
RNA-Seq Expression	MS005446
Synteny	MS005446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCAGAATGTGGGCTTCTTCTACTGCCAATTCGCTCAAATTGTCTTCTGCATCCAAAACCCATCTCTCTCCTCCATTATTCTCTCTCGCCAGATGCTTTTCCACTGGTAATTTTTCCTATTCCCTCCATTGCCTGCAAACTGTTTGTGTAAATGCTTCTGTGAAGTTGGAGCTTTTTGTTTTTCTTTTTTCTTTTGGTTGGATCCCATTTCCATTCTGTAATGTTGTTTGATTAATTCTCAATTATGATTAGTTTTATTTATTTATTTATCTGGGTAAGATAAAAGAGTGGCAATTTTCTTAGTTGAATATGAAGCAATATTGGTTGAATTTGCAGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGTGACCACCAAACAGATCATTTTTTGAACAATGTAACTCTTGTTTGCATATGTTTTGGGTTAAATTATAATTTCGGTCCTGAACATTTAGTGCTGTGTTTATTTAGCCCATATACTTTAAAGAGTTTCTAATAGGTCCCTACACTTTTATGGCTCGCCTATTTAGTTCCTGTACATTAAAAAGTTTCTAATTAAGTTTGACTTTTTATGTTGTGACTATTAGTGAAAACTTTCAAGTTATAGAGTTAATAGACATAACCCTGAAAACTTAAAAGGACATATTAGAAACTTCTTAGGGTACAAAACACTAAATAGATAGAAATACACACAGTTACCCAACACTTGTTTTTCTAGGAACCAAAGTTATAATTTATAGCCAAAATCTTGTGTTTCCAAATAAATGTGTTTCTAGAAATACAGGAAACAATAAACAAGAAACAAGAATATTACCAAATCACCTTTTAAGAAACAAAGTTATAATTTACTGCCCAAATCTTATTCCTTTGAGTGATGTTTGGATAAGAAAACTTATGGTTGCAATTCATTTTGCTGCTAGTGGAATCATGGAAACTGACTCAATCTTTTATTAGAACAAGTTTGGTATTGAAATATCTGGGTTTATAGTTGGTATTCAAATTAAACTTGGGTTGGAAGCGCTTTTCATGGGTATTGACAGGACCATCTGGGAGAAGTGGTTTTTGTGGAACTGCCAAAATCGGGTGCTCCCGTTTCTCAAGGAAAGAGTTTTGGAGCAGTGGAGAGTGTGAAAGCCACCAGTGATATCAACTCCCCAATCTCTGGTGAGGTTGTTGAAGTGAACTCACAGCTCGAGGACTCACCTGGTTTGGTAAAATTTCAACTCCTCAATTATTTGCTAATCTCTTTGGACTCTGTATTTGGTTTGATAATTTTTTGTTGTTGTTGGTTCAAGTTCCTGTATTGTGCTAACTTTAGCATTATCATTCTCGGGCGTTCACTTGTTTCGTTTTTGCATGAGTTTGGGATACCTTTTGGAAAAAAGTGTTTTTCAGCAAGAACCTATTATATAAACACTTTTGGAAGAAATTAGGGTGAGCGTGAGTTTGACATATATTTTCGTTTAAGCACTTTTTTTGTACTGTTTTTTGAAGTAAGCATCTCTCAAATACTTAAATTACAAGAGTTTCAATCACTTGTTCTTAAAAAGAGTTTTTAAATCGAAAACGTACTAGGTCAACATTAATGTGATGCCACTTCAGCTTCTTAGTTACAATGTAATAGATTGTTATTATTACATTTACAAAAGCATAGAGACTAAAACGAAACACGAGATTGAAGTATATTGTTTTATTTACTTCAGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGGTGAACTAGATTCCTTGTTTGGTCCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCAT

mRNA sequence

ATGGCTCTCAGAATGTGGGCTTCTTCTACTGCCAATTCGCTCAAATTGTCTTCTGCATCCAAAACCCATCTCTCTCCTCCATTATTCTCTCTCGCCAGATGCTTTTCCACTGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGACCATCTGGGAGAAGTGGTTTTTGTGGAACTGCCAAAATCGGGTGCTCCCGTTTCTCAAGGAAAGAGTTTTGGAGCAGTGGAGAGTGTGAAAGCCACCAGTGATATCAACTCCCCAATCTCTGGTGAGGTTGTTGAAGTGAACTCACAGCTCGAGGACTCACCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGGTGAACTAGATTCCTTGTTTGGTCCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCAT

Coding sequence (CDS)

ATGGCTCTCAGAATGTGGGCTTCTTCTACTGCCAATTCGCTCAAATTGTCTTCTGCATCCAAAACCCATCTCTCTCCTCCATTATTCTCTCTCGCCAGATGCTTTTCCACTGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGACCATCTGGGAGAAGTGGTTTTTGTGGAACTGCCAAAATCGGGTGCTCCCGTTTCTCAAGGAAAGAGTTTTGGAGCAGTGGAGAGTGTGAAAGCCACCAGTGATATCAACTCCCCAATCTCTGGTGAGGTTGTTGAAGTGAACTCACAGCTCGAGGACTCACCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGGTGAACTAGATTCCTTGTTTGGTCCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCAT

Protein sequence

MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATIGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLEDSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH

Homology

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BLAST of MS005446 vs. NCBI nr
Match: XP_022131256.1 (glycine cleavage system H protein, mitochondrial [Momordica charantia])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTA SLKLSSASKTH SPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTAKSLKLSSASKTHFSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED
Sbjct: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEE+DAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEDDAAH 166

[Close]

BLAST of MS005446 vs. NCBI nr
Match: XP_022931257.1 (glycine cleavage system H protein, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 4.8e-82
Identity = 154/166 (92.77%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSS+SKTHLSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTANALRLSSSSKTHLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+D
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNQQLKD 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. NCBI nr
Match: XP_023532627.1 (glycine cleavage system H protein 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.3 bits (804), Expect = 6.2e-82
Identity = 154/166 (92.77%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSS+SKTHLSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTANALRLSSSSKTHLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+D
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. NCBI nr
Match: XP_022995342.1 (glycine cleavage system H protein 3, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 153/166 (92.17%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSS+SKT LSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTANALRLSSSSKTLLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+D
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. NCBI nr
Match: KAG6606235.1 (Glycine cleavage system H protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.8 bits (782), Expect = 2.2e-79
Identity = 149/162 (91.98%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 5   MWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATIGITD 64
           MWASSTAN+L+LSS+SKTHLSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVA IGITD
Sbjct: 1   MWASSTANALRLSSSSKTHLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVAAIGITD 60

Query: 65  HAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLEDSPGL 124
           HAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+DSPGL
Sbjct: 61  HAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDSPGL 120

Query: 125 INSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           INSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 INSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 161

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BLAST of MS005446 vs. ExPASy Swiss-Prot
Match: P16048 (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum OX=3888 GN=GDCSH PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.1e-72
Identity = 133/166 (80.12%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+LKLSS+S+ HLS P FS++RCFS VLDGLKYA SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLS-PTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFVELP+ G  V++GK FGAVESVKATSD+NSPISGEV+EVN+ L  
Sbjct: 61  GITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTG 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
            PGLINSSPYE GWMIK+KP++P EL+SL G KEYTKFCEEEDAAH
Sbjct: 121 KPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. ExPASy Swiss-Prot
Match: Q39732 (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.0e-71
Identity = 132/166 (79.52%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSSA++ H SP    L+RCFS+VLDGLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSP----LSRCFSSVLDGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP++G  V++   FGAVESVKATSD+NSPISGE+VEVNS+L +
Sbjct: 61  GITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +PGLINSSPYE GWMIKVKPSNP ELDSL G KEYTKFCEEEDAAH
Sbjct: 121 TPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]

BLAST of MS005446 vs. ExPASy Swiss-Prot
Match: Q9LQL0 (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH3 PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.9e-71
Identity = 135/167 (80.84%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MALRMWASSTANSLKL-SSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVAT 60
           MALRMWASSTAN+LKL SSASK+HL  P FS++RCFS+VL+GLKYA+SHEWVKHEG VAT
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLL-PAFSISRCFSSVLEGLKYANSHEWVKHEGSVAT 60

Query: 61  IGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLE 120
           IGITDHAQDHLGEVVFVELP++ + VS+ KSFGAVESVKATS+I SPISGEV+EVN++L 
Sbjct: 61  IGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLT 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +SPGLINSSPYE GWMIKVKPS+P EL++L GPKEYTKFCEEEDAAH
Sbjct: 121 ESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]

BLAST of MS005446 vs. ExPASy Swiss-Prot
Match: P49359 (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.7e-71
Identity = 130/166 (78.31%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALR+WASSTAN+L+LSSA++ H SP    L+RCFS+VLDGLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRIWASSTANALRLSSATRPHFSP----LSRCFSSVLDGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP++G  V++   FGAVESVKATSD+NSPISGE+VEVNS+L +
Sbjct: 61  GITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +PGLINSSPYE GWMIKVKPSNP ELDSL G KEYTKFCEEED+AH
Sbjct: 121 TPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]

BLAST of MS005446 vs. ExPASy Swiss-Prot
Match: P25855 (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH1 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 135/167 (80.84%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSA-SKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVAT 60
           MALRMWASSTAN+LKLSS+ SK+HLSP  FS +RCFSTVL+GLKYA+SHEWVKHEG VAT
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLSP--FSFSRCFSTVLEGLKYANSHEWVKHEGSVAT 60

Query: 61  IGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLE 120
           IGIT HAQDHLGEVVFVELP+    VS+ KSFGAVESVKATS+I SPISGE++EVN +L 
Sbjct: 61  IGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLT 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +SPGLINSSPYE GWMIKVKPS+P EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 ESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. ExPASy TrEMBL
Match: A0A6J1BP23 (Glycine cleavage system H protein OS=Momordica charantia OX=3673 GN=LOC111004514 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.0e-87
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTA SLKLSSASKTH SPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTAKSLKLSSASKTHFSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED
Sbjct: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEE+DAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEDDAAH 166

[Close]

BLAST of MS005446 vs. ExPASy TrEMBL
Match: A0A6J1ET51 (Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111437487 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 154/166 (92.77%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSS+SKTHLSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTANALRLSSSSKTHLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+D
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNQQLKD 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. ExPASy TrEMBL
Match: A0A6J1JYK8 (Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111490918 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.7e-81
Identity = 153/166 (92.17%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+L+LSS+SKT LSPP FS++RCFSTVLDGLKYASSHEWVKHEGPVATI
Sbjct: 1   MALRMWASSTANALRLSSSSKTLLSPP-FSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SGAPVSQGKSFGAVESVKATSDINSPISGE+VEVN QL+D
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNP ELDSLFGPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. ExPASy TrEMBL
Match: A0A0A0LI67 (Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_3G903520 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.1e-79
Identity = 150/166 (90.36%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+LKLSS+SKTHLSP  FSL+RCFSTVLDGLKYASSHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPS-FSLSRCFSTVLDGLKYASSHEWVKHEGSVATV 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SG+ VSQGKSFGAVESVKATSDINSPISGE+VEVN QL++
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           SPGLINSSPYEGGWMIKVKPSNPGELDSL GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. ExPASy TrEMBL
Match: A0A1S3CQ17 (Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103503516 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.1e-79
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTAN+LKLSS+SKTHLSP  FSL+RCFSTVLDGLKYASSHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPS-FSLSRCFSTVLDGLKYASSHEWVKHEGSVATV 60

Query: 61  GITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLED 120
           GITDHAQDHLGEVVFV+LP+SG+ VSQGKSFGAVESVKATSDINSPISGE+VEVN QL++
Sbjct: 61  GITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +PGLINSSPYEGGWMIKVKPSNPGELDSL GPKEYTKFCEEEDAAH
Sbjct: 121 TPGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. TAIR 10
Match: AT1G32470.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-72
Identity = 135/167 (80.84%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MALRMWASSTANSLKL-SSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVAT 60
           MALRMWASSTAN+LKL SSASK+HL  P FS++RCFS+VL+GLKYA+SHEWVKHEG VAT
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLL-PAFSISRCFSSVLEGLKYANSHEWVKHEGSVAT 60

Query: 61  IGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLE 120
           IGITDHAQDHLGEVVFVELP++ + VS+ KSFGAVESVKATS+I SPISGEV+EVN++L 
Sbjct: 61  IGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLT 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +SPGLINSSPYE GWMIKVKPS+P EL++L GPKEYTKFCEEEDAAH
Sbjct: 121 ESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]

BLAST of MS005446 vs. TAIR 10
Match: AT2G35370.1 (glycine decarboxylase complex H )

HSP 1 Score: 267.3 bits (682), Expect = 8.2e-72
Identity = 135/167 (80.84%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MALRMWASSTANSLKLSSA-SKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVAT 60
           MALRMWASSTAN+LKLSS+ SK+HLSP  FS +RCFSTVL+GLKYA+SHEWVKHEG VAT
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLSP--FSFSRCFSTVLEGLKYANSHEWVKHEGSVAT 60

Query: 61  IGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLE 120
           IGIT HAQDHLGEVVFVELP+    VS+ KSFGAVESVKATS+I SPISGE++EVN +L 
Sbjct: 61  IGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLT 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +SPGLINSSPYE GWMIKVKPS+P EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 ESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]

BLAST of MS005446 vs. TAIR 10
Match: AT2G35120.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 194.9 bits (494), Expect = 5.1e-50
Identity = 105/167 (62.87%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 1   MALRM-WASSTANSLKLSSASKTHLSPPLFSLARCFSTVLDGLKYASSHEWVKHEGPVAT 60
           MA R+ WAS  A+ L++S A +       FS     S VL  LKYA SHEWVK +G  AT
Sbjct: 1   MACRLFWASRVASHLRISVAQRG------FS-----SVVLKDLKYADSHEWVKIDGNKAT 60

Query: 61  IGITDHAQDHLGEVVFVELPKSGAPVSQGKSFGAVESVKATSDINSPISGEVVEVNSQLE 120
            GITDHAQDHLG+VV+VELP  G  VSQGKSFGAVESVKATSDINSP+SG+VVEVN +L 
Sbjct: 61  FGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELT 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPGELDSLFGPKEYTKFCEEEDAAH 167
           +SPGL+NSSPYE GW+IKV+ S+ GE + L    +Y+KFCEEEDA H
Sbjct: 121 ESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

The following BLAST results are available for this feature:

BLAST of MS005446 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131256.1	1.4e-86	98.19	glycine cleavage system H protein, mitochondrial [Momordica charantia]	[more]
XP_022931257.1	4.8e-82	92.77	glycine cleavage system H protein, mitochondrial-like [Cucurbita moschata]	[more]
XP_023532627.1	6.2e-82	92.77	glycine cleavage system H protein 3, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
XP_022995342.1	1.2e-80	92.17	glycine cleavage system H protein 3, mitochondrial-like [Cucurbita maxima]	[more]
KAG6606235.1	2.2e-79	91.98	Glycine cleavage system H protein, mitochondrial, partial [Cucurbita argyrosperm...	[more]

BLAST of MS005446 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16048	6.1e-72	80.12	Glycine cleavage system H protein, mitochondrial OS=Pisum sativum OX=3888 GN=GDC...	[more]
Q39732	1.0e-71	79.52	Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN...	[more]
Q9LQL0	3.9e-71	80.84	Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P49359	6.7e-71	78.31	Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN...	[more]
P25855	1.1e-70	80.84	Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]

BLAST of MS005446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BP23	7.0e-87	98.19	Glycine cleavage system H protein OS=Momordica charantia OX=3673 GN=LOC111004514...	[more]
A0A6J1ET51	2.3e-82	92.77	Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111437487 ...	[more]
A0A6J1JYK8	5.7e-81	92.17	Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111490918 PE...	[more]
A0A0A0LI67	4.1e-79	90.36	Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_3G903520 PE=...	[more]
A0A1S3CQ17	9.1e-79	89.76	Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103503516 PE=3 S...	[more]

BLAST of MS005446 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32470.1	2.8e-72	80.84	Single hybrid motif superfamily protein	[more]
AT2G35370.1	8.2e-72	80.84	glycine decarboxylase complex H	[more]
AT2G35120.1	5.1e-50	62.87	Single hybrid motif superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017453	Glycine cleavage system H-protein, subgroup	TIGRFAM	TIGR00527	TIGR00527	coord: 40..163 e-value: 1.8E-46 score: 155.4
IPR033753	Glycine cleavage system H-protein/Simiate	PFAM	PF01597	GCV_H	coord: 42..161 e-value: 3.5E-48 score: 162.5
IPR033753	Glycine cleavage system H-protein/Simiate	CDD	cd06848	GCS_H	coord: 44..138 e-value: 1.3146E-52 score: 160.777
None	No IPR available	GENE3D	2.40.50.100		coord: 36..166 e-value: 1.1E-53 score: 182.3
None	No IPR available	PANTHER	PTHR11715:SF32	GLYCINE CLEAVAGE SYSTEM H PROTEIN	coord: 1..166
IPR002930	Glycine cleavage system H-protein	PANTHER	PTHR11715	GLYCINE CLEAVAGE SYSTEM H PROTEIN	coord: 1..166
IPR002930	Glycine cleavage system H-protein	HAMAP	MF_00272	GcvH	coord: 39..160 score: 36.471268
IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site	PROSITE	PS00189	LIPOYL	coord: 82..111
IPR000089	Biotin/lipoyl attachment	PROSITE	PS50968	BIOTINYL_LIPOYL	coord: 57..139 score: 28.947098
IPR011053	Single hybrid motif	SUPERFAMILY	51230	Single hybrid motif	coord: 38..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005446.1	MS005446.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019464	glycine decarboxylation via glycine cleavage system
cellular_component	GO:0005960	glycine cleavage complex