MS005438 (gene) Bitter gourd (TR) v1

Overview


Name	MS005438
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mannan endo-1,4-beta-mannosidase
Location	scaffold641: 182211 .. 182300 (-)
RNA-Seq Expression	MS005438
Synteny	MS005438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTTGGATTTTATGATATCGAAAGCAAGAAAACATGGGATTAAACTGATCCTGAGTTTGGTGAACAATTACGAAAATATGGGAGGGAAG

mRNA sequence

GGGTTGGATTTTATGATATCGAAAGCAAGAAAACATGGGATTAAACTGATCCTGAGTTTGGTGAACAATTACGAAAATATGGGAGGGAAG

Coding sequence (CDS)

GGGTTGGATTTTATGATATCGAAAGCAAGAAAACATGGGATTAAACTGATCCTGAGTTTGGTGAACAATTACGAAAATATGGGAGGGAAG

Protein sequence

GLDFMISKARKHGIKLILSLVNNYENMGGK

Homology

[Close]

BLAST of MS005438 vs. NCBI nr
Match: XP_027913706.1 (mannan endo-1,4-beta-mannosidase 7 [Vigna unguiculata] >QCD91055.1 Glycoside hydrolase superfamily [Vigna unguiculata])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+IS+ARKHGIKLILSLVNNYEN GGK
Sbjct: 109 GLDFVISEARKHGIKLILSLVNNYENFGGK 138

[Close]

BLAST of MS005438 vs. NCBI nr
Match: KAG7037870.1 (Mannan endo-1,4-beta-mannosidase 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +S+ARK+GIKLILSLVNNYENMGGK
Sbjct: 108 GLDFAVSEARKYGIKLILSLVNNYENMGGK 137

[Close]

BLAST of MS005438 vs. NCBI nr
Match: XP_023523795.1 (mannan endo-1,4-beta-mannosidase 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +S+ARK+GIKLILSLVNNYENMGGK
Sbjct: 104 GLDFAVSEARKYGIKLILSLVNNYENMGGK 133

[Close]

BLAST of MS005438 vs. NCBI nr
Match: XP_022941053.1 (mannan endo-1,4-beta-mannosidase 7-like [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +S+ARK+GIKLILSLVNNYENMGGK
Sbjct: 106 GLDFAVSEARKYGIKLILSLVNNYENMGGK 135

[Close]

BLAST of MS005438 vs. NCBI nr
Match: XP_010113415.1 (mannan endo-1,4-beta-mannosidase 7 [Morus notabilis] >EXC35442.1 Mannan endo-1,4-beta-mannosidase 7 [Morus notabilis])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF++++ARKHGIKLILSLVNNYEN GGK
Sbjct: 112 GLDFVVAEARKHGIKLILSLVNNYENFGGK 141

[Close]

BLAST of MS005438 vs. ExPASy Swiss-Prot
Match: Q9FZ03 (Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum OX=4081 GN=MAN2 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+IS+A+K+GI+LILS VNNY + GGK
Sbjct: 119 GLDFVISEAKKYGIRLILSFVNNYNDFGGK 148

[Close]

BLAST of MS005438 vs. ExPASy Swiss-Prot
Match: Q6YM50 (Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum OX=4081 GN=MAN5 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+IS+A+K+GI+LILS VNNY + GGK
Sbjct: 119 GLDFVISEAKKYGIRLILSFVNNYNDFGGK 148

[Close]

BLAST of MS005438 vs. ExPASy Swiss-Prot
Match: Q0JKM9 (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN1 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 1.2e-05
Identity = 20/30 (66.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF++S+ARK+GIK+ILSLV+NY++ GG+
Sbjct: 118 GLDFVLSEARKYGIKVILSLVDNYDSFGGR 147

[Close]

BLAST of MS005438 vs. ExPASy Swiss-Prot
Match: Q9FJZ3 (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana OX=3702 GN=MAN7 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.5e-05
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +++AR+HGIK+ILS  NNYE+ GG+
Sbjct: 111 GLDFALAEARRHGIKIILSFANNYESFGGR 140

[Close]

BLAST of MS005438 vs. ExPASy Swiss-Prot
Match: Q10B67 (Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN4 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.4e-05
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+I++AR+HGI L+L L NN++N GGK
Sbjct: 104 GLDFVIAEARRHGIYLLLCLTNNFDNFGGK 133

[Close]

BLAST of MS005438 vs. ExPASy TrEMBL
Match: A0A4D6LRD9 (Mannan endo-1,4-beta-mannosidase OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2018 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+IS+ARKHGIKLILSLVNNYEN GGK
Sbjct: 109 GLDFVISEARKHGIKLILSLVNNYENFGGK 138

[Close]

BLAST of MS005438 vs. ExPASy TrEMBL
Match: A0A6J1J0U5 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111480874 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +S+ARK+GIKLILSLVNNYENMGGK
Sbjct: 106 GLDFAVSEARKYGIKLILSLVNNYENMGGK 135

[Close]

BLAST of MS005438 vs. ExPASy TrEMBL
Match: A0A5B7B161 (Mannan endo-1,4-beta-mannosidase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_030634 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-06
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+IS+ARK+GIKLILSLVNNYEN+GGK
Sbjct: 98  GLDFVISEARKYGIKLILSLVNNYENLGGK 127

[Close]

BLAST of MS005438 vs. ExPASy TrEMBL
Match: W9SN68 (Mannan endo-1,4-beta-mannosidase OS=Morus notabilis OX=981085 GN=L484_026748 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-06
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF++++ARKHGIKLILSLVNNYEN GGK
Sbjct: 112 GLDFVVAEARKHGIKLILSLVNNYENFGGK 141

[Close]

BLAST of MS005438 vs. ExPASy TrEMBL
Match: A0A6J1FR05 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111446456 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +S+ARK+GIKLILSLVNNYENMGGK
Sbjct: 106 GLDFAVSEARKYGIKLILSLVNNYENMGGK 135

[Close]

BLAST of MS005438 vs. TAIR 10
Match: AT5G66460.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-06
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF +++AR+HGIK+ILS  NNYE+ GG+
Sbjct: 111 GLDFALAEARRHGIKIILSFANNYESFGGR 140

[Close]

BLAST of MS005438 vs. TAIR 10
Match: AT3G10900.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.5e-05
Identity = 18/30 (60.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF+I++A++ GIKLI+ LVNN+++ GGK
Sbjct: 110 GLDFVIAEAKRIGIKLIILLVNNWDDYGGK 139

[Close]

BLAST of MS005438 vs. TAIR 10
Match: AT5G01930.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.9e-05
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 2   LDFMISKARKHGIKLILSLVNNYENMGGK 31
           LDF++S+ARK+ I+LILSLVNN++  GGK
Sbjct: 128 LDFVLSEARKYKIRLILSLVNNWDAYGGK 156

[Close]

BLAST of MS005438 vs. TAIR 10
Match: AT3G10890.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 1.3e-04
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF I++A++ GIK+I++ VNNY + GG+
Sbjct: 111 GLDFAIAEAKRLGIKMIITFVNNYSDFGGR 140

[Close]

BLAST of MS005438 vs. TAIR 10
Match: AT1G02310.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 1.7e-04
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1   GLDFMISKARKHGIKLILSLVNNYENMGGK 31
           GLDF++ +A +  IKLI+SLVNN+E+ GG+
Sbjct: 111 GLDFVVYEAGRFNIKLIISLVNNFEDYGGR 140

The following BLAST results are available for this feature:

BLAST of MS005438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027913706.1	6.5e-06	90.00	mannan endo-1,4-beta-mannosidase 7 [Vigna unguiculata] >QCD91055.1 Glycoside hyd...	[more]
KAG7037870.1	1.9e-05	86.67	Mannan endo-1,4-beta-mannosidase 7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023523795.1	1.9e-05	86.67	mannan endo-1,4-beta-mannosidase 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941053.1	1.9e-05	86.67	mannan endo-1,4-beta-mannosidase 7-like [Cucurbita moschata]	[more]
XP_010113415.1	1.9e-05	83.33	mannan endo-1,4-beta-mannosidase 7 [Morus notabilis] >EXC35442.1 Mannan endo-1,4...	[more]

BLAST of MS005438 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ03	8.9e-06	70.00	Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum OX=4081 GN=MAN2 PE=2 ...	[more]
Q6YM50	8.9e-06	70.00	Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum OX=4081 GN=MAN5 PE=2 ...	[more]
Q0JKM9	1.2e-05	66.67	Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=M...	[more]
Q9FJZ3	1.5e-05	63.33	Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana OX=3702 GN=MAN7 PE=2 ...	[more]
Q10B67	3.4e-05	63.33	Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=M...	[more]

BLAST of MS005438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6LRD9	3.2e-06	90.00	Mannan endo-1,4-beta-mannosidase OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2018 ...	[more]
A0A6J1J0U5	9.2e-06	86.67	Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111480874 PE=...	[more]
A0A5B7B161	9.2e-06	86.67	Mannan endo-1,4-beta-mannosidase (Fragment) OS=Davidia involucrata OX=16924 GN=D...	[more]
W9SN68	9.2e-06	83.33	Mannan endo-1,4-beta-mannosidase OS=Morus notabilis OX=981085 GN=L484_026748 PE=...	[more]
A0A6J1FR05	9.2e-06	86.67	Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111446456 P...	[more]

BLAST of MS005438 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66460.1	1.1e-06	63.33	Glycosyl hydrolase superfamily protein	[more]
AT3G10900.1	4.5e-05	60.00	Glycosyl hydrolase superfamily protein	[more]
AT5G01930.1	5.9e-05	65.52	Glycosyl hydrolase superfamily protein	[more]
AT3G10890.1	1.3e-04	53.33	Glycosyl hydrolase superfamily protein	[more]
AT1G02310.1	1.7e-04	56.67	Glycosyl hydrolase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 1..30 e-value: 8.1E-8 score: 33.9
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 2..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005438.1	MS005438.1	mRNA