MS005437 (gene) Bitter gourd (TR) v1

Overview


Name	MS005437
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Prolamin_like domain-containing protein
Location	scaffold641: 181049 .. 181435 (-)
RNA-Seq Expression	MS005437
Synteny	MS005437

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAATCGGTTCGATTTTTCGGCTTCCTTCTCTTTGCCCTAGCGGTTTCATCGTCAATTCAATCGGCCTTCTCTCTCAGGAAGATTCCCGAGCCGGAGGCGATTGATTCGGACGATTGGTCGGCGGCGGCGTGTTGGGACGCGATAAACGCGGTGGAAGGGTGCCAGAATGAGATCGACATGTCGTTGAAGAGCGGTGAGATCGAGGTGAGTTTCGATTGCTGCAAAGTGATATTACATGGCCTGCCGCTCAAATGCAGCGGCGTGATTTTTTCGTCCGGCGGAGAGTTCTCGCCGGAGTTCAGCGGCGCCGTTAACGAATATTGCGACGGGATGGGAATTACTCCGCCGGTGCTTGAGCCGGAGGATAAAACTGAAGAAACT

mRNA sequence

ATGTCGAAATCGGTTCGATTTTTCGGCTTCCTTCTCTTTGCCCTAGCGGTTTCATCGTCAATTCAATCGGCCTTCTCTCTCAGGAAGATTCCCGAGCCGGAGGCGATTGATTCGGACGATTGGTCGGCGGCGGCGTGTTGGGACGCGATAAACGCGGTGGAAGGGTGCCAGAATGAGATCGACATGTCGTTGAAGAGCGGTGAGATCGAGGTGAGTTTCGATTGCTGCAAAGTGATATTACATGGCCTGCCGCTCAAATGCAGCGGCGTGATTTTTTCGTCCGGCGGAGAGTTCTCGCCGGAGTTCAGCGGCGCCGTTAACGAATATTGCGACGGGATGGGAATTACTCCGCCGGTGCTTGAGCCGGAGGATAAAACTGAAGAAACT

Coding sequence (CDS)

ATGTCGAAATCGGTTCGATTTTTCGGCTTCCTTCTCTTTGCCCTAGCGGTTTCATCGTCAATTCAATCGGCCTTCTCTCTCAGGAAGATTCCCGAGCCGGAGGCGATTGATTCGGACGATTGGTCGGCGGCGGCGTGTTGGGACGCGATAAACGCGGTGGAAGGGTGCCAGAATGAGATCGACATGTCGTTGAAGAGCGGTGAGATCGAGGTGAGTTTCGATTGCTGCAAAGTGATATTACATGGCCTGCCGCTCAAATGCAGCGGCGTGATTTTTTCGTCCGGCGGAGAGTTCTCGCCGGAGTTCAGCGGCGCCGTTAACGAATATTGCGACGGGATGGGAATTACTCCGCCGGTGCTTGAGCCGGAGGATAAAACTGAAGAAACT

Protein sequence

MSKSVRFFGFLLFALAVSSSIQSAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQNEIDMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVLEPEDKTEET

Homology

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BLAST of MS005437 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 4.4e-43
Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQSAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQNEI 60
           MSKS RFFGF L ALA+SSS QSAF++RKI   EA+ S D     CWDAINAVEGCQN+I
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKI--AEAVYSAD-----CWDAINAVEGCQNQI 60

Query: 61  DMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVL 120
           D ++KS EIEVS+DCCKVILHG+P KC+ V+FSSGGEFSPE SGAVNEYCDGMGITPPVL
Sbjct: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 117

Query: 121 EPED 125
           E ED
Sbjct: 121 ETED 117

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BLAST of MS005437 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.9e-42
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQ--SAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQN 60
           M KSVRF GFLL ALA+SSSIQ  SAF+LR I  PEA++S DWSAA CWDAI AVEGCQ+
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNI--PEALNSADWSAATCWDAITAVEGCQD 60

Query: 61  EIDMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPP 120
           EIDM++KS EIEVS DCC+ ILHGLP KC+  +FSSGGEFS E SGAVNEYCDGMGITPP
Sbjct: 61  EIDMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPP 120

Query: 121 VLEPED 125
           VLE ++
Sbjct: 121 VLETDE 123

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BLAST of MS005437 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQSAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQNEI 60
           MSKSVRFFGF L AL +SS I SAF+LRK   P+AIDS DWS AAC DA+NAVEGCQ EI
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKF--PKAIDSADWSTAACLDALNAVEGCQGEI 60

Query: 61  DMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVL 120
           DM++ S EIEVS++CC+VILHGLP KC+ V+FSSGGE S E SGAV EYCDGMGITPPVL
Sbjct: 61  DMAINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

[Close]

BLAST of MS005437 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 70  EVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVLEPED-KTEE 129
           +VS+DCCKVILHG+P KC+ V+FSSGGEFSP+ SGAVNEYCDGMGITPPVLE ED K EE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

[Close]

BLAST of MS005437 vs. NCBI nr
Match: KAB2067183.1 (hypothetical protein ES319_A09G209500v1 [Gossypium barbadense] >KAG4184881.1 hypothetical protein ERO13_A09G198350v2 [Gossypium hirsutum] >TYH03608.1 hypothetical protein ES288_A09G233000v1 [Gossypium darwinii] >TYI11744.1 hypothetical protein ES332_A09G228100v1 [Gossypium tomentosum])

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-08
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 11  LLFALAVSSSIQSAFSL-----RKIPEPEAIDSDDWSAAACWDAINAVEGCQNEIDMSLK 70
           L+ ALA + +I  A S+     R +P+P            CW  IN   GC++EI  SL 
Sbjct: 17  LILALAFAIAITPALSVVGWDERHMPDPR----------VCWAQINKANGCEHEIYASLV 76

Query: 71  SGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPP 119
             +I++S+ CC+ +  G+  KC   +F+  G FSPEF   +  YC  +G+T P
Sbjct: 77  KKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

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BLAST of MS005437 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43
Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQSAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQNEI 60
           MSKS RFFGF L ALA+SSS QSAF++RKI   EA+ S D     CWDAINAVEGCQN+I
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKI--AEAVYSAD-----CWDAINAVEGCQNQI 60

Query: 61  DMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVL 120
           D ++KS EIEVS+DCCKVILHG+P KC+ V+FSSGGEFSPE SGAVNEYCDGMGITPPVL
Sbjct: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 117

Query: 121 EPED 125
           E ED
Sbjct: 121 ETED 117

[Close]

BLAST of MS005437 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQSAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQNEI 60
           MSKSVRFFGF L  LA SSS  SAF++RKI   EA+ S D     CWDAINAV+GCQNEI
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKI--AEAVYSSD-----CWDAINAVKGCQNEI 60

Query: 61  DMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPPVL 120
           D ++KS EIEVS+DCCKVILHG+P KC+ V+FSSGGEFSP+ SGAVNEYCDGMGITPPVL
Sbjct: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVL 120

Query: 121 EPED-KTEE 129
           E ED K EE
Sbjct: 121 ETEDTKVEE 122

[Close]

BLAST of MS005437 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MSKSVRFFGFLLFALAVSSSIQ--SAFSLRKIPEPEAIDSDDWSAAACWDAINAVEGCQN 60
           M KSVRF GFLL ALA+SSSIQ  SAF+LR I  PEA++S DWSAA CWDAI AVEGCQ+
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNI--PEALNSADWSAATCWDAITAVEGCQD 60

Query: 61  EIDMSLKSGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPP 120
           EIDM++KS EIEVS DCC+ ILHGLP KC+  +FSSGGEFS E SGAVNEYCDGMGITPP
Sbjct: 61  EIDMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPP 120

Query: 121 VLEPED 125
           VLE ++
Sbjct: 121 VLETDE 123

[Close]

BLAST of MS005437 vs. ExPASy TrEMBL
Match: A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 11  LLFALAVSSSIQSAFSL-----RKIPEPEAIDSDDWSAAACWDAINAVEGCQNEIDMSLK 70
           L+ ALA + +I  A S+     R +P+P            CW  IN   GC++EI  SL 
Sbjct: 17  LILALAFAIAITPALSVVGWDERHMPDPR----------VCWAQINKANGCEHEIYASLV 76

Query: 71  SGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPP 119
             +I++S+ CC+ +  G+  KC   +F+  G FSPEF   +  YC  +G+T P
Sbjct: 77  KKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

[Close]

BLAST of MS005437 vs. ExPASy TrEMBL
Match: A0A5J5UI71 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G209500v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 11  LLFALAVSSSIQSAFSL-----RKIPEPEAIDSDDWSAAACWDAINAVEGCQNEIDMSLK 70
           L+ ALA + +I  A S+     R +P+P            CW  IN   GC++EI  SL 
Sbjct: 17  LILALAFAIAITPALSVVGWDERHMPDPR----------VCWAQINKANGCEHEIYASLV 76

Query: 71  SGEIEVSFDCCKVILHGLPLKCSGVIFSSGGEFSPEFSGAVNEYCDGMGITPP 119
             +I++S+ CC+ +  G+  KC   +F+  G FSPEF   +  YC  +G+T P
Sbjct: 77  KKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

The following BLAST results are available for this feature:

BLAST of MS005437 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038539.1	4.4e-43	75.00	hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136...	[more]
XP_022931003.1	4.9e-42	74.60	uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet...	[more]
KAG6571831.1	6.4e-42	74.17	hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652857.1	4.5e-19	80.00	hypothetical protein Csa_023774, partial [Cucumis sativus]	[more]
KAB2067183.1	7.9e-08	34.51	hypothetical protein ES319_A09G209500v1 [Gossypium barbadense] >KAG4184881.1 hyp...	[more]

BLAST of MS005437 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB28	2.1e-43	75.00	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LEG0	1.4e-42	72.87	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040...	[more]
A0A6J1EX44	2.4e-42	74.60	uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A5D2P8P3	3.8e-08	34.51	Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A5J5UI71	3.8e-08	34.51	Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319...	[more]

BLAST of MS005437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 46..111 e-value: 3.0E-7 score: 30.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005437.1	MS005437.1	mRNA