MS005434 (gene) Bitter gourd (TR) v1

Overview


Name	MS005434
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	tobamovirus multiplication protein 2B
Location	scaffold641: 167356 .. 168275 (+)
RNA-Seq Expression	MS005434
Synteny	MS005434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGCTTCCGCGTCAGCTCGAAGCGGCAGAGATGGTACGGCCAAGGCCATGGTGGCCGATCACATTTCTCAGTCGGTACGATCCACTTCAAATCTCCTTCACCTGATGCAGCAATCGTCTCCGGCCCAGGCATGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATTTGATTTCCGAAGCTTTACAAGTTCGTTCAAATGGTGCTCTGATGAGTAGTTTTGATAGATGATAGCTGAATTTTTTTCGATTTATGTTTCTTGAGGTTCCTCTTCCTTCTATTTTCGAATTTTGAGGAAAGTTGATGGAAATCTTGAATTGTATGAATTGATGATTGAACTTCCTAAATTTACTGTTCATTGTATCTTTCTACAACATTTAGATTAAATTCATTGAGATATCATATGATATTATAAATAAAATTTTATAATACTGTACTGATATTTTACCGTGCGAGTATTGTTTGCATCGCAGTCATGATTTCAATTATCCCTACCTTGGACAATGGAATTGAAATTTAGCTCTGATTATTCTCTTCGAATTTTGTCGACGTGAGATGGATTCAACTCAAGTTCTAGTCTTATTGCTGAAATGGAACTTTATTTGGTATTTTCTCTTATTGCATTGCATTCAATTCAGTTTCTCATATAGTGTCGTCTTGTCTGCAGGCTCAGTTAATTAAGTTGCCAAAGAACCTTTTGGCGAAAGCGCCTGCTATAAAAAATACTGGGAAAGTATGTAGATTCGGTTAATAACCTGGACAAGTTCTTATTTTGTTTATTTATTTTTTATGAAACTTCTGAAAGCACTTTCATTTCTTCCTGTGATGCAGATCTTAGAGCAGATGCCGAAGGTGGTTTCATCCTTAGATGCATATGTAGAGAAGGGACTAGAAAGGTTCTTATTGTCC

mRNA sequence

ATGGCGACGGCTTCCGCGTCAGCTCGAAGCGGCAGAGATGGTACGGCCAAGGCCATGGTGGCCGATCACATTTCTCAGTCGGTACGATCCACTTCAAATCTCCTTCACCTGATGCAGCAATCGTCTCCGGCCCAGGCATGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATATAGTGTCGTCTTGTCTGCAGGCTCAGTTAATTAAGTTGCCAAAGAACCTTTTGGCGAAAGCGCCTGCTATAAAAAATACTGGGAAAATCTTAGAGCAGATGCCGAAGGTGGTTTCATCCTTAGATGCATATGTAGAGAAGGGACTAGAAAGGTTCTTATTGTCC

Coding sequence (CDS)

ATGGCGACGGCTTCCGCGTCAGCTCGAAGCGGCAGAGATGGTACGGCCAAGGCCATGGTGGCCGATCACATTTCTCAGTCGGTACGATCCACTTCAAATCTCCTTCACCTGATGCAGCAATCGTCTCCGGCCCAGGCATGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATATAGTGTCGTCTTGTCTGCAGGCTCAGTTAATTAAGTTGCCAAAGAACCTTTTGGCGAAAGCGCCTGCTATAAAAAATACTGGGAAAATCTTAGAGCAGATGCCGAAGGTGGTTTCATCCTTAGATGCATATGTAGAGAAGGGACTAGAAAGGTTCTTATTGTCC

Protein sequence

MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLERFLLS

Homology

[Close]

BLAST of MS005434 vs. NCBI nr
Match: KAG7011526.1 (Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 100/144 (69.44%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSL- 60
           MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQA  LSLSLSLSLSL 
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQACSLSLSLSLSLSLS 60

Query: 61  ------------------SHIV--------------SSCLQAQLIKLPKNLLAKAPAIKN 112
                             S IV              SSCLQAQL KLPKNLLAKA  IKN
Sbjct: 61  LSFVFSEALRVHSNGTLRSRIVSYVLRCFQLSLSYSSSCLQAQLAKLPKNLLAKASTIKN 120

[Close]

BLAST of MS005434 vs. NCBI nr
Match: XP_023553911.1 (tobamovirus multiplication protein 2B isoform X5 [Cucurbita pepo subsp. pepo] >XP_023553912.1 tobamovirus multiplication protein 2B isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-32
Identity = 92/114 (80.70%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLERFL 115
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLER L
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLERLL 102

[Close]

BLAST of MS005434 vs. NCBI nr
Match: XP_022156647.1 (tobamovirus multiplication protein 2B [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-32
Identity = 88/111 (79.28%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA                
Sbjct: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA---------------- 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE 112
                  QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE
Sbjct: 61  -------QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE 88

[Close]

BLAST of MS005434 vs. NCBI nr
Match: XP_022952820.1 (tobamovirus multiplication protein 2B isoform X5 [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 91/114 (79.82%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLERFL 115
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLER L
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLERLL 102

[Close]

BLAST of MS005434 vs. NCBI nr
Match: XP_023553908.1 (tobamovirus multiplication protein 2B isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 91/112 (81.25%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLER 113
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLER
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLER 100

[Close]

BLAST of MS005434 vs. ExPASy Swiss-Prot
Match: Q8H960 (Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLS 60
           MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +              
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSS-------------- 60

Query: 61  LSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL 111
                    QAQL KLPKNLLAKA   K TG+ L Q+P+V+SSLDA++E GL
Sbjct: 61  ---------QAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGL 89

[Close]

BLAST of MS005434 vs. ExPASy TrEMBL
Match: A0A6J1DSI3 (tobamovirus multiplication protein 2B OS=Momordica charantia OX=3673 GN=LOC111023492 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.5e-32
Identity = 88/111 (79.28%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA                
Sbjct: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA---------------- 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE 112
                  QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE
Sbjct: 61  -------QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE 88

[Close]

BLAST of MS005434 vs. ExPASy TrEMBL
Match: A0A6J1GMT7 (tobamovirus multiplication protein 2B isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111455403 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.9e-32
Identity = 91/114 (79.82%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLERFL 115
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLER L
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLERLL 102

[Close]

BLAST of MS005434 vs. ExPASy TrEMBL
Match: A0A6J1GLN3 (tobamovirus multiplication protein 2B isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111455403 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 90/112 (80.36%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLER 113
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLER
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLER 100

[Close]

BLAST of MS005434 vs. ExPASy TrEMBL
Match: A0A6J1GL95 (tobamovirus multiplication protein 2B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455403 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 89/111 (80.18%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLS 60
           MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQ---------LSLSYS 60

Query: 61  HIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE 112
              SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLE
Sbjct: 61  ---SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLE 99

[Close]

BLAST of MS005434 vs. ExPASy TrEMBL
Match: A0A6J1IA79 (tobamovirus multiplication protein 2B isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111470655 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 88/113 (77.88%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 2   ATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSH 61
           A+ASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ          SLS S 
Sbjct: 4   ASASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQ---------FSLSYS- 63

Query: 62  IVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLERFL 115
             SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDA+VEKGLER L
Sbjct: 64  --SSCLQAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAHVEKGLERLL 104

[Close]

BLAST of MS005434 vs. TAIR 10
Match: AT1G32370.1 (tobamovirus multiplication 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.5e-19
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLS 60
           MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +              
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSS-------------- 60

Query: 61  LSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL 111
                    QAQL KLPKNLLAKA   K TG+ L Q+P+V+SSLDA++E GL
Sbjct: 61  ---------QAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGL 89

[Close]

BLAST of MS005434 vs. TAIR 10
Match: AT1G32370.2 (tobamovirus multiplication 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.5e-19
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLS 60
           MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +              
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSS-------------- 60

Query: 61  LSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL 111
                    QAQL KLPKNLLAKA   K TG+ L Q+P+V+SSLDA++E GL
Sbjct: 61  ---------QAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGL 89

[Close]

BLAST of MS005434 vs. TAIR 10
Match: AT1G32370.3 (tobamovirus multiplication 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.5e-19
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLS 60
           MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +              
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSS-------------- 60

Query: 61  LSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL 111
                    QAQL KLPKNLLAKA   K TG+ L Q+P+V+SSLDA++E GL
Sbjct: 61  ---------QAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGL 89

[Close]

BLAST of MS005434 vs. TAIR 10
Match: AT1G32370.4 (tobamovirus multiplication 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.5e-19
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLS 60
           MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +              
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSS-------------- 60

Query: 61  LSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL 111
                    QAQL KLPKNLLAKA   K TG+ L Q+P+V+SSLDA++E GL
Sbjct: 61  ---------QAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGL 89

The following BLAST results are available for this feature:

BLAST of MS005434 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011526.1	2.4e-32	69.44	Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_023553911.1	7.1e-32	80.70	tobamovirus multiplication protein 2B isoform X5 [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022156647.1	9.2e-32	79.28	tobamovirus multiplication protein 2B [Momordica charantia]	[more]
XP_022952820.1	2.1e-31	79.82	tobamovirus multiplication protein 2B isoform X5 [Cucurbita moschata]	[more]
XP_023553908.1	2.1e-31	81.25	tobamovirus multiplication protein 2B isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS005434 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H960	1.3e-17	53.57	Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B P...	[more]

BLAST of MS005434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSI3	4.5e-32	79.28	tobamovirus multiplication protein 2B OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1GMT7	9.9e-32	79.82	tobamovirus multiplication protein 2B isoform X5 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GLN3	2.9e-31	80.36	tobamovirus multiplication protein 2B isoform X3 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GL95	1.1e-30	80.18	tobamovirus multiplication protein 2B isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IA79	4.2e-30	77.88	tobamovirus multiplication protein 2B isoform X4 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of MS005434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32370.1	9.5e-19	53.57	tobamovirus multiplication 2B	[more]
AT1G32370.2	9.5e-19	53.57	tobamovirus multiplication 2B	[more]
AT1G32370.3	9.5e-19	53.57	tobamovirus multiplication 2B	[more]
AT1G32370.4	9.5e-19	53.57	tobamovirus multiplication 2B	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005434.1	MS005434.1	mRNA