MS005428 (gene) Bitter gourd (TR) v1

Overview


Name	MS005428
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Allyl alcohol dehydrogenase-like protein
Location	scaffold641: 122805 .. 123095 (+)
RNA-Seq Expression	MS005428
Synteny	MS005428

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTTCTCTCATGGTGGAAAGGCGAAGCAGCTCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCTGAAGAATGTATCTCAGCCGGCCGAAGTCCCCGGTCTGAACGGCGCCGTCGAAGTTCCCCGACCGGGCAGTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCGTCCGATAAGGTCACGCTCGCCGGATACTGCCCCGTCTCCGACGACCTCGAGCCGTGCCGCTGGGAGATTCTGCCTGCGACCGGCTCCGATGCTCCCCTTTTTCGCGTCGTCTTC

mRNA sequence

ATGGGCCTTCTCTCATGGTGGAAAGGCGAAGCAGCTCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCTGAAGAATGTATCTCAGCCGGCCGAAGTCCCCGGTCTGAACGGCGCCGTCGAAGTTCCCCGACCGGGCAGTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCGTCCGATAAGGTCACGCTCGCCGGATACTGCCCCGTCTCCGACGACCTCGAGCCGTGCCGCTGGGAGATTCTGCCTGCGACCGGCTCCGATGCTCCCCTTTTTCGCGTCGTCTTC

Coding sequence (CDS)

ATGGGCCTTCTCTCATGGTGGAAAGGCGAAGCAGCTCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCTGAAGAATGTATCTCAGCCGGCCGAAGTCCCCGGTCTGAACGGCGCCGTCGAAGTTCCCCGACCGGGCAGTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCGTCCGATAAGGTCACGCTCGCCGGATACTGCCCCGTCTCCGACGACCTCGAGCCGTGCCGCTGGGAGATTCTGCCTGCGACCGGCTCCGATGCTCCCCTTTTTCGCGTCGTCTTC

Protein sequence

MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSSDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF

Homology

[Close]

BLAST of MS005428 vs. NCBI nr
Match: XP_022157409.1 (uncharacterized protein LOC111024112 [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS 60
          MGLLSWWKGEAAPSESNSKPQPPL NVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS
Sbjct: 1  MGLLSWWKGEAAPSESNSKPQPPLXNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS 60

Query: 61 DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF
Sbjct: 61 DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 97

[Close]

BLAST of MS005428 vs. NCBI nr
Match: XP_038886991.1 (uncharacterized protein LOC120077159 [Benincasa hispida] >XP_038886992.1 uncharacterized protein LOC120077159 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 9.7e-43
Identity = 88/98 (89.80%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG++ PS+SNSKP PP KNVSQPAEVPGLNGAVEVPRP  +VTVFEFGSVSSS
Sbjct: 1  MGLLSWWKGQSPPSDSNSKPPPPQKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSSS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SDKVTLAGYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. NCBI nr
Match: XP_022952897.1 (uncharacterized protein LOC111455443 [Cucurbita moschata] >KAG7011515.1 hypothetical protein SDJN02_26421, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG +APSESNSKPQPP KNVSQPAEVPGLNGAVEVPRP  +VTVFEFGSVS+S
Sbjct: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SD VTL GYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. NCBI nr
Match: XP_023554244.1 (uncharacterized protein LOC111811567 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG +APSESNSKPQPP KNVSQP EVPGLNGAVEVPRP  +VTVFEFGSVS+S
Sbjct: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPPEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SD VTL GYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. NCBI nr
Match: XP_022972011.1 (uncharacterized protein LOC111470658 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG +APSESNSK QPP KNVSQPAEVPGLNGAVEVPRP  +VTVFEFGSVS+S
Sbjct: 1  MGLLSWWKGGSAPSESNSKSQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SD VTL GYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. ExPASy TrEMBL
Match: A0A6J1DWE4 (uncharacterized protein LOC111024112 OS=Momordica charantia OX=3673 GN=LOC111024112 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS 60
          MGLLSWWKGEAAPSESNSKPQPPL NVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS
Sbjct: 1  MGLLSWWKGEAAPSESNSKPQPPLXNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS 60

Query: 61 DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF
Sbjct: 61 DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 97

[Close]

BLAST of MS005428 vs. ExPASy TrEMBL
Match: A0A6J1GLN4 (uncharacterized protein LOC111455443 OS=Cucurbita moschata OX=3662 GN=LOC111455443 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG +APSESNSKPQPP KNVSQPAEVPGLNGAVEVPRP  +VTVFEFGSVS+S
Sbjct: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SD VTL GYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. ExPASy TrEMBL
Match: A0A6J1I4S4 (uncharacterized protein LOC111470658 OS=Cucurbita maxima OX=3661 GN=LOC111470658 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.9e-42
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSSS 60
          MGLLSWWKG +APSESNSK QPP KNVSQPAEVPGLNGAVEVPRP  +VTVFEFGSVS+S
Sbjct: 1  MGLLSWWKGGSAPSESNSKSQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SD VTL GYCPVSDDLEPCRWEILPA+GSDAPLFRVVF
Sbjct: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 98

[Close]

BLAST of MS005428 vs. ExPASy TrEMBL
Match: A0A5D3E692 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004090 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSK-PQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSS 60
          MGLLSWWKG++ PS+S SK PQPP KN+SQPAEVPGLNGA+EVPRP  SVTVFEFGSV++
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPSKNLSQPAEVPGLNGALEVPRPAASVTVFEFGSVTA 60

Query: 61 SSDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SSDKVTLAGYCPVSDD EPCRWEI+PA+GSDAPLFR+VF
Sbjct: 61 SSDKVTLAGYCPVSDDFEPCRWEIMPASGSDAPLFRIVF 99

[Close]

BLAST of MS005428 vs. ExPASy TrEMBL
Match: A0A1S3CQC7 (uncharacterized protein LOC103503504 OS=Cucumis melo OX=3656 GN=LOC103503504 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSK-PQPPLKNVSQPAEVPGLNGAVEVPRP-GSVTVFEFGSVSS 60
          MGLLSWWKG++ PS+S SK PQPP KN+SQPAEVPGLNGA+EVPRP  SVTVFEFGSV++
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPSKNLSQPAEVPGLNGALEVPRPAASVTVFEFGSVTA 60

Query: 61 SSDKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          SSDKVTLAGYCPVSDD EPCRWEI+PA+GSDAPLFR+VF
Sbjct: 61 SSDKVTLAGYCPVSDDFEPCRWEIMPASGSDAPLFRIVF 99

[Close]

BLAST of MS005428 vs. TAIR 10
Match: AT3G59840.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-31
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MGLLSWWKGEAAPSESNSKPQPPLKNVSQPAEVPGLNGAVEVPRPGSVTVFEFGSVSSSS 60
          MG+LSW+ G   PS+S +     ++        PG+NGA+EVPRP   TVFEFGSV+++ 
Sbjct: 1  MGILSWFTGSPKPSQSETSKPEMIQMPKSETPAPGMNGAIEVPRPDRATVFEFGSVAATG 60

Query: 61 DKVTLAGYCPVSDDLEPCRWEILPATGSDAPLFRVVF 98
          D+VTLAGYCPVSDDLEPCRWEILPA G DAP FRVVF
Sbjct: 61 DRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 97

The following BLAST results are available for this feature:

BLAST of MS005428 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157409.1	5.9e-48	98.97	uncharacterized protein LOC111024112 [Momordica charantia]	[more]
XP_038886991.1	9.7e-43	89.80	uncharacterized protein LOC120077159 [Benincasa hispida] >XP_038886992.1 unchara...	[more]
XP_022952897.1	2.2e-42	89.80	uncharacterized protein LOC111455443 [Cucurbita moschata] >KAG7011515.1 hypothet...	[more]
XP_023554244.1	8.2e-42	88.78	uncharacterized protein LOC111811567 [Cucurbita pepo subsp. pepo]	[more]
XP_022972011.1	1.8e-41	88.78	uncharacterized protein LOC111470658 [Cucurbita maxima]	[more]

BLAST of MS005428 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005428 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE4	2.8e-48	98.97	uncharacterized protein LOC111024112 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1GLN4	1.0e-42	89.80	uncharacterized protein LOC111455443 OS=Cucurbita moschata OX=3662 GN=LOC1114554...	[more]
A0A6J1I4S4	8.9e-42	88.78	uncharacterized protein LOC111470658 OS=Cucurbita maxima OX=3661 GN=LOC111470658...	[more]
A0A5D3E692	8.3e-40	82.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQC7	8.3e-40	82.83	uncharacterized protein LOC103503504 OS=Cucumis melo OX=3656 GN=LOC103503504 PE=...	[more]

BLAST of MS005428 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59840.1	1.8e-31	61.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005428.1	MS005428.1	mRNA