MS005280 (gene) Bitter gourd (TR) v1

Overview


Name	MS005280
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold83: 561392 .. 561517 (-)
RNA-Seq Expression	MS005280
Synteny	MS005280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGAGTAGGGAAGTCGTCCCCTCTG

mRNA sequence

GCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGAGTAGGGAAGTCGTCCCCTCTG

Coding sequence (CDS)

GCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGAGTAGGGAAGTCGTCCCCTCTG

Protein sequence

ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRVGKSSPL

Homology

[Close]

BLAST of MS005280 vs. NCBI nr
Match: PPR89037.1 (hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetical protein ES332_D04G101500v1 [Gossypium tomentosum])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
          ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 40 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 75

[Close]

BLAST of MS005280 vs. NCBI nr
Match: KAF3973006.1 (hypothetical protein CMV_003550 [Castanea mollissima])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
           ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 112 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 147

[Close]

BLAST of MS005280 vs. NCBI nr
Match: KAB8477477.1 (hypothetical protein FH972_025343 [Carpinus fangiana])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
          ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 54 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 89

[Close]

BLAST of MS005280 vs. NCBI nr
Match: KAG6621683.1 (hypothetical protein I3842_Q010000 [Carya illinoinensis])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
           ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 83  ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 118

[Close]

BLAST of MS005280 vs. NCBI nr
Match: KAB1226671.1 (hypothetical protein CJ030_MR1G008480 [Morella rubra])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
           ARKLPSCP+SHSVNRKGKP HPSAPLVDRCGFTKR+
Sbjct: 83  ARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRL 118

[Close]

BLAST of MS005280 vs. ExPASy TrEMBL
Match: A0A5D2LBI2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
          ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 40 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 75

[Close]

BLAST of MS005280 vs. ExPASy TrEMBL
Match: A0A5N6L0R1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
          ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 54 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 89

[Close]

BLAST of MS005280 vs. ExPASy TrEMBL
Match: A0A2P5WDA1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
          ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 40 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 75

[Close]

BLAST of MS005280 vs. ExPASy TrEMBL
Match: A0A7N2MTH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
           ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKR+
Sbjct: 112 ARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRL 147

[Close]

BLAST of MS005280 vs. ExPASy TrEMBL
Match: A0A6A1WN45 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   ARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRV 37
           ARKLPSCP+SHSVNRKGKP HPSAPLVDRCGFTKR+
Sbjct: 83  ARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRL 118

The following BLAST results are available for this feature:

BLAST of MS005280 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR89037.1	3.2e-11	94.44	hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetic...	[more]
KAF3973006.1	3.2e-11	94.44	hypothetical protein CMV_003550 [Castanea mollissima]	[more]
KAB8477477.1	3.2e-11	94.44	hypothetical protein FH972_025343 [Carpinus fangiana]	[more]
KAG6621683.1	3.2e-11	94.44	hypothetical protein I3842_Q010000 [Carya illinoinensis]	[more]
KAB1226671.1	1.2e-10	91.67	hypothetical protein CJ030_MR1G008480 [Morella rubra]	[more]

BLAST of MS005280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2LBI2	1.6e-11	94.44	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 P...	[more]
A0A5N6L0R1	1.6e-11	94.44	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1	[more]
A0A2P5WDA1	1.6e-11	94.44	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV...	[more]
A0A7N2MTH6	1.6e-11	94.44	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1WN45	6.0e-11	91.67	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1	[more]

BLAST of MS005280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005280.1	MS005280.1	mRNA