MS005266 (gene) Bitter gourd (TR) v1

Overview


Name	MS005266
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	VQ domain-containing protein
Location	scaffold83: 426413 .. 426781 (-)
RNA-Seq Expression	MS005266
Synteny	MS005266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACCCCACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCGCCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAA

mRNA sequence

ATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACCCCACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCGCCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAA

Coding sequence (CDS)

ATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACCCCACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCGCCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAA

Protein sequence

MGKCGEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ

Homology

[Close]

BLAST of MS005266 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 1   MGKCGEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDA 60
           MGKCGE N++K+  QSQNPTKVQRKPIKVKYISSPMM+KASNA EFRAIVQQLTGF S +
Sbjct: 1   MGKCGE-NEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHS 60

Query: 61  TISPTNHRPPP-AARAPSSTLL-----LEAIGVPDDRSSLLHLDEGGCF-GRENDLPNTF 120
               +NH+PPP AA+ PS++ L     +EA+ + D+ SSLL  D+  CF   +N L N F
Sbjct: 61  PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNF 120

Query: 121 LGFQSSFLFQ 124
           +GFQ+S LFQ
Sbjct: 121 MGFQASCLFQ 129

[Close]

BLAST of MS005266 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 9.8e-24
Identity = 77/140 (55.00%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 1   MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLT 60
           MGKCGE NQY NH      SQ+QNPTKVQRKPIKVKYISSPMM+KASNA+EFRAIVQQLT
Sbjct: 1   MGKCGE-NQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLT 60

Query: 61  GFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVPDDR--SSLLHLDEGGCFGRE 120
           GF+S+      N +     AR PS+        +E +   DD    SLL  D  GCF  +
Sbjct: 61  GFDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 ND---LPNTFLGFQSSFLFQ 124
           N+   LPN  + FQSS  FQ
Sbjct: 121 NNNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of MS005266 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-12
Identity = 59/134 (44.03%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 5   GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISP 64
           G++  ++ H +S+NPTK ++ PIK+KYISSPMMVKASNA EFRAIVQ+LTG NSD    P
Sbjct: 21  GKLRDHRCH-KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG-EP 80

Query: 65  TN----------------HRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGREND 123
           +N                H   P A+    +LL       DD SS L  DEG  +     
Sbjct: 81  SNVPTTLPEEANQVHSPFHVDSPPAKVDDKSLL---DTFQDDMSS-LEFDEGFLW---RA 140

[Close]

BLAST of MS005266 vs. NCBI nr
Match: MBA0699683.1 (hypothetical protein [Gossypium aridum] >MBA0873279.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 15  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAAR 74
           +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N        
Sbjct: 11  KSKKPKKI---PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMG-EPVNVVTTNTKA 70

Query: 75  APSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ 124
                 LL+A   PDD SS+   DEG  +     +     GFQS F+F+
Sbjct: 71  KLDDRNLLDA--YPDDMSSMELFDEGFVW---RGVAENLFGFQSPFVFE 110

[Close]

BLAST of MS005266 vs. NCBI nr
Match: MBA0728360.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-09
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 15  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAAR 74
           +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N        
Sbjct: 11  KSKKPKKI---PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMG-EPVNVVTTNTKA 70

Query: 75  APSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ 124
                 LL+A   PDD SS+   DEG  +     +  T  GFQS  +F+
Sbjct: 71  KLDDRKLLDA--YPDDMSSMELFDEGFVW---RGVAETLFGFQSPSVFE 110

[Close]

BLAST of MS005266 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 77/140 (55.00%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 1   MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLT 60
           MGKCGE NQY NH      SQ+QNPTKVQRKPIKVKYISSPMM+KASNA+EFRAIVQQLT
Sbjct: 1   MGKCGE-NQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLT 60

Query: 61  GFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVPDDR--SSLLHLDEGGCFGRE 120
           GF+S+      N +     AR PS+        +E +   DD    SLL  D  GCF  +
Sbjct: 61  GFDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 ND---LPNTFLGFQSSFLFQ 124
           N+   LPN  + FQSS  FQ
Sbjct: 121 NNNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of MS005266 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 59/134 (44.03%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 5   GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISP 64
           G++  ++ H +S+NPTK ++ PIK+KYISSPMMVKASNA EFRAIVQ+LTG NSD    P
Sbjct: 21  GKLRDHRCH-KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG-EP 80

Query: 65  TN----------------HRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGREND 123
           +N                H   P A+    +LL       DD SS L  DEG  +     
Sbjct: 81  SNVPTTLPEEANQVHSPFHVDSPPAKVDDKSLL---DTFQDDMSS-LEFDEGFLW---RA 140

[Close]

BLAST of MS005266 vs. ExPASy TrEMBL
Match: A0A7J9MSD9 (VQ domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_000177 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 15  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAAR 74
           +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N        
Sbjct: 11  KSKKPKKI---PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMG-EPVNVVTTNTKA 70

Query: 75  APSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ 124
                 LL+A   PDD SS+   DEG  +     +     GFQS F+F+
Sbjct: 71  KLDDRNLLDA--YPDDMSSMELFDEGFVW---RGVAENLFGFQSPFVFE 110

[Close]

BLAST of MS005266 vs. ExPASy TrEMBL
Match: A0A7J8YJB9 (VQ domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_001295 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 15  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAAR 74
           +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N        
Sbjct: 11  KSKKPKKI---PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMG-EPVNVVTTNTKA 70

Query: 75  APSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ 124
                 LL+A   PDD SS+   DEG  +     +     GFQS F+F+
Sbjct: 71  KLDDRNLLDA--YPDDMSSMELFDEGFVW---RGVAENLFGFQSPFVFE 110

[Close]

BLAST of MS005266 vs. ExPASy TrEMBL
Match: A0A7J9AWI4 (VQ domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_001264 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 15  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAAR 74
           +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N        
Sbjct: 11  KSKKPKKI---PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMG-EPVNVVTTNTKA 70

Query: 75  APSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ 124
                 LL+A   PDD SS+   DEG  +     +  T  GFQS  +F+
Sbjct: 71  KLDDRKLLDA--YPDDMSSMELFDEGFVW---RGVAETLFGFQSPSVFE 110

The following BLAST results are available for this feature:

BLAST of MS005266 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599333.1	1.8e-30	61.54	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60779.1	9.8e-24	55.00	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
XP_021282108.1	6.6e-12	44.03	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
MBA0699683.1	2.3e-09	46.79	hypothetical protein [Gossypium aridum] >MBA0873279.1 hypothetical protein [Goss...	[more]
MBA0728360.1	4.0e-09	46.79	hypothetical protein [Gossypium laxum]	[more]

BLAST of MS005266 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	4.7e-24	55.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A6J1A533	3.2e-12	44.03	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A7J9MSD9	1.1e-09	46.79	VQ domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_000177...	[more]
A0A7J8YJB9	1.1e-09	46.79	VQ domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_001295 PE=4 S...	[more]
A0A7J9AWI4	1.9e-09	46.79	VQ domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_001264 PE=4 SV...	[more]

BLAST of MS005266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 32..59 e-value: 6.0E-9 score: 35.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 9..62
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 9..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005266.1	MS005266.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity