MS005066 (gene) Bitter gourd (TR) v1

Overview
NameMS005066
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold176: 2432016 .. 2432656 (+)
RNA-Seq ExpressionMS005066
SyntenyMS005066
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCGGAATCTATTTCAGGCAACCGCGTTTATCGGGCACCCAACTGATAGATCCGTCTTACTTTCCCCAATTTCAGGTGCGGGGTTTTTCCCTTTTTCCTTTTCGAATTCTCTCTCACTGAACTGCTCAATTAATTTCATGTATCCGTCTTTGTTTTGATTCGATCCATTTCCACGCACTAGGCTCCGAGGATCTCTTTTATGATTGTTATTTGTTCTTCTTTTGTAGAAATTGTTTACACCCTCGCTTTGGATTTCTCGCTAATTAGAAAGATTCCAGATCGTTTCAATTTGGCGGCTGGAAAGAAATTCGGTTCTTGGTAATTTAATTTCTACCGGGTTTCTGAGGGTTAGTGTATTCGTTTTCTCAATCTGTTTGAATAGGGCTGCGAGAGCTTCTCTAATTGGTATAACTTCGTGCTCGTAATATCACGAATATCGTATAAATGGAATATTCTGAGTATATATGCTACACATATTCACACTTTGTTTCAATAAATTAATGGAAAAAGGAAACAAGTGCGTACTGATTGCTGCTTTCAAGGATCGGAATTTGTTTCCTGGGTATTGGGAAGATAATCAGAGACCGCCAGGATATTGCATTTTGAGATTGGTGGTGTTTGTTGGTATAGCCTGT

mRNA sequence

ATGTTCGTCGGAATCTATTTCAGGCAACCGCGTTTATCGGGCACCCAACTGATAGATCCGTCTTACTTTCCCCAATTTCAGGTGCGGGTATATATGCTACACATATTCACACTTTGTTTCAATAAATTAATGGAAAAAGGAAACAAGTGCGTACTGATTGCTGCTTTCAAGGATCGGAATTTGTTTCCTGGGTATTGGGAAGATAATCAGAGACCGCCAGGATATTGCATTTTGAGATTGGTGGTGTTTGTTGGTATAGCCTGT

Coding sequence (CDS)

ATGTTCGTCGGAATCTATTTCAGGCAACCGCGTTTATCGGGCACCCAACTGATAGATCCGTCTTACTTTCCCCAATTTCAGGTGCGGGTATATATGCTACACATATTCACACTTTGTTTCAATAAATTAATGGAAAAAGGAAACAAGTGCGTACTGATTGCTGCTTTCAAGGATCGGAATTTGTTTCCTGGGTATTGGGAAGATAATCAGAGACCGCCAGGATATTGCATTTTGAGATTGGTGGTGTTTGTTGGTATAGCCTGT

Protein sequence

MFVGIYFRQPRLSGTQLIDPSYFPQFQVRVYMLHIFTLCFNKLMEKGNKCVLIAAFKDRNLFPGYWEDNQRPPGYCILRLVVFVGIAC
Homology
[Close]
BLAST of MS005066 vs. NCBI nr
Match: KGN46832.1 (hypothetical protein Csa_020677 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-27
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 1  MFVGIYFRQPRLSGTQLIDPSYFPQFQVRVYMLHIFTLCFN--KLMEKGNKCVLIAAFKD 60
          MFVG  FRQPR S TQ IDPSYFPQFQ+ ++        +N  +++  GNKC+LIAAFKD
Sbjct: 1  MFVGNSFRQPRTSNTQSIDPSYFPQFQIVLFG------GWNDIQIVRGGNKCLLIAAFKD 60

Query: 61 RNLFPGYWEDNQRPPGYCILRLVVFVGIAC 89
          RNLFPGYWEDNQRPPGYCILRLVVF+G AC
Sbjct: 61 RNLFPGYWEDNQRPPGYCILRLVVFIGTAC 84

[Close]
BLAST of MS005066 vs. ExPASy TrEMBL
Match: A0A0A0KEJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140800 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 1  MFVGIYFRQPRLSGTQLIDPSYFPQFQVRVYMLHIFTLCFN--KLMEKGNKCVLIAAFKD 60
          MFVG  FRQPR S TQ IDPSYFPQFQ+ ++        +N  +++  GNKC+LIAAFKD
Sbjct: 1  MFVGNSFRQPRTSNTQSIDPSYFPQFQIVLFG------GWNDIQIVRGGNKCLLIAAFKD 60

Query: 61 RNLFPGYWEDNQRPPGYCILRLVVFVGIAC 89
          RNLFPGYWEDNQRPPGYCILRLVVF+G AC
Sbjct: 61 RNLFPGYWEDNQRPPGYCILRLVVFIGTAC 84

The following BLAST results are available for this feature:
BLAST of MS005066 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46832.15.2e-2768.89hypothetical protein Csa_020677 [Cucumis sativus][more]
BLAST of MS005066 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS005066 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEJ12.5e-2768.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140800 PE=4 SV=1[more]
BLAST of MS005066 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005066.1MS005066.1mRNA