MS005061 (gene) Bitter gourd (TR) v1

Overview


Name	MS005061
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein transport protein Sec61 subunit beta
Location	scaffold176: 2410463 .. 2410783 (+)
RNA-Seq Expression	MS005061
Synteny	MS005061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGGCACCTCTCAATCTCAATCTGCATCCTCTTCGACATCCAGACCTGGCGTCGCGGCTCCGCGTGGCTCCGCGGCGGCGACCGCCGGCCTCCGTCGACGTCGTCTCACATCCACTGGTTCCGCCGGCTCTGGTGGAGTTGTTGGCGCCGGATCGAGTGGCGGTGGCAACATGTTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCCCCCACCGTCGTCCTCGTCATGAGCCTCTGTTTCATCGGATTCGTTACCGGCCTCCACGTCTTTGGTAAGCTCTATCGAGCGCGATCCGGCGCGGGAGTT

mRNA sequence

ATGGCCAGAGGCACCTCTCAATCTCAATCTGCATCCTCTTCGACATCCAGACCTGGCGTCGCGGCTCCGCGTGGCTCCGCGGCGGCGACCGCCGGCCTCCGTCGACGTCGTCTCACATCCACTGGTTCCGCCGGCTCTGGTGGAGTTGTTGGCGCCGGATCGAGTGGCGGTGGCAACATGTTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCCCCCACCGTCGTCCTCGTCATGAGCCTCTGTTTCATCGGATTCGTTACCGGCCTCCACGTCTTTGGTAAGCTCTATCGAGCGCGATCCGGCGCGGGAGTT

Coding sequence (CDS)

ATGGCCAGAGGCACCTCTCAATCTCAATCTGCATCCTCTTCGACATCCAGACCTGGCGTCGCGGCTCCGCGTGGCTCCGCGGCGGCGACCGCCGGCCTCCGTCGACGTCGTCTCACATCCACTGGTTCCGCCGGCTCTGGTGGAGTTGTTGGCGCCGGATCGAGTGGCGGTGGCAACATGTTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCCCCCACCGTCGTCCTCGTCATGAGCCTCTGTTTCATCGGATTCGTTACCGGCCTCCACGTCTTTGGTAAGCTCTATCGAGCGCGATCCGGCGCGGGAGTT

Protein sequence

MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV

Homology

[Close]

BLAST of MS005061 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 3.6e-46
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of MS005061 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.7 bits (439), Expect = 8.5e-40
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of MS005061 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 95/107 (88.79%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARG SQSQS SSSTSRPGV APRGSAAATAGLRRRR  ST +A S G+VG GSSGGGNM
Sbjct: 1   MARGVSQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPGSTSAAASTGLVGGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of MS005061 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGG 60
           MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST ++ S G+VG GSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of MS005061 vs. NCBI nr
Match: XP_008463929.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0035333.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK14304.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 92/109 (84.40%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGG 60
           MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST +  S G+VG GSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of MS005061 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 19  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISP 78
           G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP
Sbjct: 3   GSGAPQRGSAAATASMRRRKPTS-------GAGGGGASGGAAGSMLQFYTDDAPGLKISP 62

Query: 79  TVVLVMSLCFIGFVTGLHVFGKLY 100
            VVL+MS+ FI FV  LHV GKLY
Sbjct: 63  NVVLIMSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of MS005061 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFY 64
           T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGST--VRQRKNASCGTRSAGRTTSAGT---GGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of MS005061 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFY 64
           T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGST--VRQRKNASCGTRSAGRTTSAGT---GGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of MS005061 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFY 64
           T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGST--VRQRKNASCGTRSAGRTTSAGT---GGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

[Close]

BLAST of MS005061 vs. ExPASy Swiss-Prot
Match: Q5RB31 (Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B PE=3 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFY 64
           T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGST--VRQRKNASCGTRSAGRTTSAGT---GGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of MS005061 vs. ExPASy TrEMBL
Match: A0A6J1CGL0 (Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=LOC111011042 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of MS005061 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of MS005061 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of MS005061 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.5e-37
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGG 60
           MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST ++ S G+VG GSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of MS005061 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 92/109 (84.40%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGG 60
           MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST +  S G+VG GSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of MS005061 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-33
Identity = 81/108 (75.00%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MARGTSQSQ---SASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG 60
           MARG+SQSQ   S  SST+RPG+AAPRGSAAATAG+RRRRL   G   SGG  G G SG 
Sbjct: 1   MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVG-SGS 60

Query: 61  GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGA 106
            NMLRFYTDDAPGLKISPTVVL+MSLCFIGFVT LHVFGKLY  +SG+
Sbjct: 61  SNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]

BLAST of MS005061 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 19  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISP 78
           G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP
Sbjct: 3   GSGAPQRGSAAATASMRRRKPTS-------GAGGGGASGGAAGSMLQFYTDDAPGLKISP 62

Query: 79  TVVLVMSLCFIGFVTGLHVFGKLY 100
            VVL+MS+ FI FV  LHV GKLY
Sbjct: 63  NVVLIMSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of MS005061 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 19  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISP 78
           G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP
Sbjct: 3   GSGAPQRGSAAATASMRRRKPTS-------GAGGGGASGGAAGSMLQFYTDDAPGLKISP 62

Query: 79  TVVLVMSLCFIGFVTGLHVFGKLY 100
            VVL+MS+ FI FV  LHV GKLY
Sbjct: 63  NVVLIMSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of MS005061 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 19  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISP 78
           G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP
Sbjct: 3   GSGAPQRGSAAATASMRRRKPTS-------GAGGGGASGGAAGSMLQFYTDDAPGLKISP 62

Query: 79  TVVLVMSLCFIGFVTGLHVFGKLY 100
            VVL+MS+ FI FV  LHV GKLY
Sbjct: 63  NVVLIMSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of MS005061 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 19  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISP 78
           G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP
Sbjct: 3   GSGAPQRGSAAATASMRRRKPTS-------GAGGGGASGGAAGSMLQFYTDDAPGLKISP 62

Query: 79  TVVLVMSLCFIGFVTGLHVFGKLY 100
            VVL+MS+ FI FV  LHV GKLY
Sbjct: 63  NVVLIMSIGFIAFVAVLHVMGKLY 79

The following BLAST results are available for this feature:

BLAST of MS005061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140347.1	3.6e-46	100.00	protein transport protein Sec61 subunit beta [Momordica charantia]	[more]
XP_022958107.1	8.5e-40	89.72	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_038902812.1	7.2e-39	88.79	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_004149541.1	2.0e-36	84.40	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]
XP_008463929.1	2.6e-36	84.40	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA00353...	[more]

BLAST of MS005061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	1.8e-16	64.29	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P60467	2.6e-07	41.24	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
P60468	2.6e-07	41.24	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]
Q9CQS8	2.6e-07	41.24	Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b ...	[more]
Q5RB31	2.6e-07	41.24	Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B P...	[more]

BLAST of MS005061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGL0	1.7e-46	100.00	Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1JZ65	4.1e-40	89.72	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	4.1e-40	89.72	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KHR1	9.5e-37	84.40	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	1.2e-36	84.40	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of MS005061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	2.8e-33	75.00	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	1.3e-17	64.29	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	1.3e-17	64.29	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	1.3e-17	64.29	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	1.3e-17	64.29	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 58..96 e-value: 1.1E-17 score: 63.8
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 11..104 e-value: 1.9E-27 score: 93.5
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005061.1	MS005061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005784	Sec61 translocon complex