MS005045 (gene) Bitter gourd (TR) v1

Overview


Name	MS005045
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Location	scaffold176: 2308637 .. 2308770 (+)
RNA-Seq Expression	MS005045
Synteny	MS005045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACTAATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

mRNA sequence

TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

Coding sequence (CDS)

TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

Protein sequence

LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP

Homology

[Close]

BLAST of MS005045 vs. NCBI nr
Match: KAG6607722.1 (Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. NCBI nr
Match: XP_022940780.1 (carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata] >XP_022940781.1 carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. NCBI nr
Match: XP_038899248.1 (carbamoyl-phosphate synthase large chain, chloroplastic [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 857 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 899

[Close]

BLAST of MS005045 vs. NCBI nr
Match: KAG7037297.1 (Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 855 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 897

[Close]

BLAST of MS005045 vs. NCBI nr
Match: XP_008447795.1 (PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: B9EXM2 (Carbamoyl-phosphate synthase large chain, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CARB PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L DA EI  DALADS GN+ IGGIM+   E AG+HSGDS CSLP
Sbjct: 838 LIDAIEIDVDALADSVGNVVIGGIME-HIEQAGIHSGDSACSLP 880

[Close]

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: Q42601 (Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CARB PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-07
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  D L DS+GN+ IGGIM+   E AGVHSGDS C LP
Sbjct: 859 LSDAIEIDVDTLTDSYGNVVIGGIME-HIEQAGVHSGDSACMLP 901

[Close]

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: P58942 (Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=carB PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-06
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  D +AD  GN+ IGG+M+   E AGVHSGDS CSLP
Sbjct: 756 LDNAVEVDVDIIADKDGNVLIGGVMEHIEE-AGVHSGDSSCSLP 798

[Close]

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: P58943 (Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=carB PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-06
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  D +AD  GN+ IGG+M+   E AGVHSGDS CSLP
Sbjct: 756 LDNAVEVDVDIIADKDGNVLIGGVMEHIEE-AGVHSGDSSCSLP 798

[Close]

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: Q8YQL2 (Carbamoyl-phosphate synthase large chain OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=carB PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-05
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  DA+AD  G + IGGIM+   E AG+HSGDS CSLP
Sbjct: 780 LENAIEVDVDAIADHTGRVVIGGIME-HIEQAGIHSGDSACSLP 822

[Close]

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1FJE6 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita moschata OX=3662 GN=LOC111446274 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1IZ99 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita maxima OX=3661 GN=LOC111480508 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A5D3DID8 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002620 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 855 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 897

[Close]

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A0A0K592 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis sativus OX=3659 GN=Csa_7G189190 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

[Close]

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1CFG0 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Momordica charantia OX=3673 GN=LOC111010317 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 859 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 901

[Close]

BLAST of MS005045 vs. TAIR 10
Match: AT1G29900.1 (carbamoyl phosphate synthetase B )

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-08
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  D L DS+GN+ IGGIM+   E AGVHSGDS C LP
Sbjct: 859 LSDAIEIDVDTLTDSYGNVVIGGIME-HIEQAGVHSGDSACMLP 901

The following BLAST results are available for this feature:

BLAST of MS005045 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607722.1	7.8e-08	79.55	Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argy...	[more]
XP_022940780.1	7.8e-08	79.55	carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata...	[more]
XP_038899248.1	7.8e-08	79.55	carbamoyl-phosphate synthase large chain, chloroplastic [Benincasa hispida]	[more]
KAG7037297.1	7.8e-08	79.55	Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argy...	[more]
XP_008447795.1	7.8e-08	79.55	PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Cucumis melo...	[more]

BLAST of MS005045 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9EXM2	2.4e-07	68.18	Carbamoyl-phosphate synthase large chain, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q42601	3.1e-07	65.91	Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana ...	[more]
P58942	4.5e-06	56.82	Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri (st...	[more]
P58943	4.5e-06	56.82	Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestri...	[more]
Q8YQL2	1.7e-05	56.82	Carbamoyl-phosphate synthase large chain OS=Nostoc sp. (strain PCC 7120 / SAG 25...	[more]

BLAST of MS005045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJE6	3.8e-08	79.55	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita moschata OX=36...	[more]
A0A6J1IZ99	3.8e-08	79.55	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita maxima OX=3661...	[more]
A0A5D3DID8	3.8e-08	79.55	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis melo var. makuwa...	[more]
A0A0A0K592	3.8e-08	79.55	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis sativus OX=3659 ...	[more]
A0A6J1CFG0	3.8e-08	79.55	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Momordica charantia OX=3...	[more]

BLAST of MS005045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29900.1	2.2e-08	65.91	carbamoyl phosphate synthetase B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.470.20		coord: 1..44 e-value: 5.6E-6 score: 27.6
None	No IPR available	SUPERFAMILY	56059	Glutathione synthetase ATP-binding domain-like	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005045.1	MS005045.1	mRNA