MS004962 (gene) Bitter gourd (TR) v1

Overview


Name	MS004962
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RPM1-interacting protein 4
Location	scaffold176: 1733191 .. 1733421 (+)
RNA-Seq Expression	MS004962
Synteny	MS004962

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCAGGAAAAAGGCAGTAGCAGTCCATTGCCAAAGTTCGGCGAATGGGACGTCAACGACCCAGCATCCGCCGAGGGGTTCACAGTAATCTTTAACAAGGCCAGGAATGAGAAAAAGACTGGTGGGTTGCCTGACTCTCCAGCGAAGGACGACCCCACGTACAAGCATGGAGCTGTTCTTGGAAAGCCTCAGTCTGTAAGTTCTTTGCAGCAAAATCTTTTCAATTTCTTT

mRNA sequence

CTGCAGGAAAAAGGCAGTAGCAGTCCATTGCCAAAGTTCGGCGAATGGGACGTCAACGACCCAGCATCCGCCGAGGGGTTCACAGTAATCTTTAACAAGGCCAGGAATGAGAAAAAGACTGGTGGGTTGCCTGACTCTCCAGCGAAGGACGACCCCACGTACAAGCATGGAGCTGTTCTTGGAAAGCCTCAGTCTGTAAGTTCTTTGCAGCAAAATCTTTTCAATTTCTTT

Coding sequence (CDS)

CTGCAGGAAAAAGGCAGTAGCAGTCCATTGCCAAAGTTCGGCGAATGGGACGTCAACGACCCAGCATCCGCCGAGGGGTTCACAGTAATCTTTAACAAGGCCAGGAATGAGAAAAAGACTGGTGGGTTGCCTGACTCTCCAGCGAAGGACGACCCCACGTACAAGCATGGAGCTGTTCTTGGAAAGCCTCAGTCTGTAAGTTCTTTGCAGCAAAATCTTTTCAATTTCTTT

Protein sequence

LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQSVSSLQQNLFNFF

Homology

[Close]

BLAST of MS004962 vs. NCBI nr
Match: KAG7010787.1 (hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-29
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 2   QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLG 61
           +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VLG
Sbjct: 99  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLG 158

Query: 62  KPQSVSSLQQNL 74
           KPQ VSSLQ N+
Sbjct: 159 KPQPVSSLQPNV 170

[Close]

BLAST of MS004962 vs. NCBI nr
Match: XP_022140725.1 (RPM1-interacting protein 4 [Momordica charantia])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60

Query: 61 GKPQS 66
          GKPQS
Sbjct: 61 GKPQS 65

[Close]

BLAST of MS004962 vs. NCBI nr
Match: XP_022947540.1 (uncharacterized protein LOC111451376 isoform X2 [Cucurbita moschata] >XP_022971145.1 uncharacterized protein LOC111469905 isoform X2 [Cucurbita maxima] >XP_023534545.1 uncharacterized protein LOC111796087 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. NCBI nr
Match: XP_022947539.1 (uncharacterized protein LOC111451376 isoform X1 [Cucurbita moschata] >XP_022971144.1 uncharacterized protein LOC111469905 isoform X1 [Cucurbita maxima] >XP_023534543.1 uncharacterized protein LOC111796087 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6604921.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. NCBI nr
Match: XP_022943908.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022985731.1 RPM1-interacting protein 4-like [Cucurbita maxima] >XP_023512852.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVL 60

Query: 61 GKPQ 65
          GKPQ
Sbjct: 61 GKPQ 64

[Close]

BLAST of MS004962 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGA 60
          + +KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G 
Sbjct: 1  MSDKG--RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGG 60

Query: 61 VLGKPQ 65
             KPQ
Sbjct: 61 DPSKPQ 64

[Close]

BLAST of MS004962 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-05
Identity = 19/32 (59.38%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 10  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 42
           +PKFG+WD N+P+SA+G+T IFNK R E+ +G
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

[Close]

BLAST of MS004962 vs. ExPASy TrEMBL
Match: A0A6J1CFY0 (RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111011320 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60

Query: 61 GKPQS 66
          GKPQS
Sbjct: 61 GKPQS 65

[Close]

BLAST of MS004962 vs. ExPASy TrEMBL
Match: A0A6J1I4X6 (uncharacterized protein LOC111469905 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469905 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. ExPASy TrEMBL
Match: A0A6J1G769 (uncharacterized protein LOC111451376 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451376 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. ExPASy TrEMBL
Match: A0A6J1I7R1 (uncharacterized protein LOC111469905 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469905 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. ExPASy TrEMBL
Match: A0A6J1G736 (uncharacterized protein LOC111451376 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451376 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVL 60
          + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVL 60

Query: 61 GKPQ 65
          GK Q
Sbjct: 61 GKSQ 64

[Close]

BLAST of MS004962 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-20
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 9  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY-KHGAVLGKP 64
          PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+P Y K+G VL KP
Sbjct: 7  PLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKP 62

[Close]

BLAST of MS004962 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 1  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGA 60
          + +KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G 
Sbjct: 1  MSDKG--RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGG 60

Query: 61 VLGKPQSVSSL 70
             KPQ V  +
Sbjct: 61 DPSKPQPVKKM 69

[Close]

BLAST of MS004962 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 4.5e-17
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 9  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQSV 68
          PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ V
Sbjct: 23 PLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQPV 82

Query: 69 SSL 70
            +
Sbjct: 83 KKM 85

[Close]

BLAST of MS004962 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-16
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 9  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQ 65
          PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ
Sbjct: 23 PLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQ 80

[Close]

BLAST of MS004962 vs. TAIR 10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 2  QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG--------LPDSPAKDDPT 56
          Q +    PLPKFGEWDVNDPASAEGFTVIF KAR++KKT            ++ ++D+PT
Sbjct: 7  QRQQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPT 66

The following BLAST results are available for this feature:

BLAST of MS004962 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010787.1	3.7e-29	88.89	hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022140725.1	1.4e-28	96.92	RPM1-interacting protein 4 [Momordica charantia]	[more]
XP_022947540.1	2.0e-27	95.31	uncharacterized protein LOC111451376 isoform X2 [Cucurbita moschata] >XP_0229711...	[more]
XP_022947539.1	1.0e-26	93.75	uncharacterized protein LOC111451376 isoform X1 [Cucurbita moschata] >XP_0229711...	[more]
XP_022943908.1	3.8e-26	90.63	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022985731.1 RPM1-intera...	[more]

BLAST of MS004962 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	1.9e-15	65.15	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	1.0e-05	59.38	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of MS004962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFY0	6.8e-29	96.92	RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111011320 PE=4 S...	[more]
A0A6J1I4X6	9.9e-28	95.31	uncharacterized protein LOC111469905 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G769	9.9e-28	95.31	uncharacterized protein LOC111451376 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I7R1	4.9e-27	93.75	uncharacterized protein LOC111469905 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G736	4.9e-27	93.75	uncharacterized protein LOC111451376 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MS004962 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04410.1	5.7e-20	80.36	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	2.7e-17	61.97	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	4.5e-17	66.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	1.7e-16	70.69	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	5.7e-12	54.84	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 7..40 e-value: 6.9E-22 score: 76.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..55
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 8..68
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 8..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004962.1	MS004962.1	mRNA