MS004640 (gene) Bitter gourd (TR) v1

Overview


Name	MS004640
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	TonB-dependent heme receptor A
Location	scaffold564: 78091 .. 78312 (-)
RNA-Seq Expression	MS004640
Synteny	MS004640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGCTAATAGAGGGTTTCACTCAACTGGTGCGAAGAGAATGGGAGGCCATGCACATGGCCACGATGAGCCTTACTATTTGCATGCAAAGCACATGTATAACTTGGACAGGATGAAGAATCAGAAGCTGACCATGACGCTCGGAGTATTCACTGCTTTCAGCATCGGTGTGGCCGTTCCGATCTATGCAGTCATCTTCCAGCAGAAGAAGACGGCCTCTGGT

mRNA sequence

ACAGCTAATAGAGGGTTTCACTCAACTGGTGCGAAGAGAATGGGAGGCCATGCACATGGCCACGATGAGCCTTACTATTTGCATGCAAAGCACATGTATAACTTGGACAGGATGAAGAATCAGAAGCTGACCATGACGCTCGGAGTATTCACTGCTTTCAGCATCGGTGTGGCCGTTCCGATCTATGCAGTCATCTTCCAGCAGAAGAAGACGGCCTCTGGT

Coding sequence (CDS)

ACAGCTAATAGAGGGTTTCACTCAACTGGTGCGAAGAGAATGGGAGGCCATGCACATGGCCACGATGAGCCTTACTATTTGCATGCAAAGCACATGTATAACTTGGACAGGATGAAGAATCAGAAGCTGACCATGACGCTCGGAGTATTCACTGCTTTCAGCATCGGTGTGGCCGTTCCGATCTATGCAGTCATCTTCCAGCAGAAGAAGACGGCCTCTGGT

Protein sequence

TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPIYAVIFQQKKTASG

Homology

[Close]

BLAST of MS004640 vs. NCBI nr
Match: XP_022143637.1 (uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncharacterized protein LOC111013498 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP
Sbjct: 24 SANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAVIFQQKKTASG
Sbjct: 84 IYAVIFQQKKTASG 97

[Close]

BLAST of MS004640 vs. NCBI nr
Match: XP_038899385.1 (uncharacterized protein LOC120086696 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 9.1e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP
Sbjct: 24 SANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAVIFQQKKTASG
Sbjct: 84 IYAVIFQQKKTASG 97

[Close]

BLAST of MS004640 vs. NCBI nr
Match: XP_011659116.1 (uncharacterized protein LOC101215354 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +A RGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGVAVP
Sbjct: 24 SAKRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVAVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAV+FQQKKTASG
Sbjct: 84 IYAVVFQQKKTASG 97

[Close]

BLAST of MS004640 vs. NCBI nr
Match: KAG6607652.1 (hypothetical protein SDJN03_00994, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 8.5e-31
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKL+M LGVFTAFSIGV VP
Sbjct: 24 SANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLSMRLGVFTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAV+FQQKKTASG
Sbjct: 84 IYAVMFQQKKTASG 97

[Close]

BLAST of MS004640 vs. NCBI nr
Match: XP_004138643.2 (uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical protein Csa_022386 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGV TAFSIGV VP
Sbjct: 24 SANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAV+FQQKKTASG
Sbjct: 84 IYAVVFQQKKTASG 97

[Close]

BLAST of MS004640 vs. ExPASy TrEMBL
Match: A0A6J1CR70 (uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013498 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP
Sbjct: 24 SANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAVIFQQKKTASG
Sbjct: 84 IYAVIFQQKKTASG 97

[Close]

BLAST of MS004640 vs. ExPASy TrEMBL
Match: A0A0A0LQ20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.0e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGV TAFSIGV VP
Sbjct: 24 SANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAV+FQQKKTASG
Sbjct: 84 IYAVVFQQKKTASG 97

[Close]

BLAST of MS004640 vs. ExPASy TrEMBL
Match: A0A6J1J2Q3 (uncharacterized protein LOC111480717 OS=Cucurbita maxima OX=3661 GN=LOC111480717 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.2e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHST  KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKL+M LGVFTAFSIGV VP
Sbjct: 24 SANRGFHSTAVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLSMRLGVFTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAVIFQQKKTASG
Sbjct: 84 IYAVIFQQKKTASG 97

[Close]

BLAST of MS004640 vs. ExPASy TrEMBL
Match: A0A6J1EHC8 (uncharacterized protein LOC111433382 OS=Cucurbita moschata OX=3662 GN=LOC111433382 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRG HSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKL+M LGVFTAFSIGV VP
Sbjct: 24 SANRGLHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLSMRLGVFTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          IYAV+FQQKKTASG
Sbjct: 84 IYAVMFQQKKTASG 97

[Close]

BLAST of MS004640 vs. ExPASy TrEMBL
Match: A0A1S3B3R2 (uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGV TAFSIGV VP
Sbjct: 24 SANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTAS 74
          IYAV+FQQKKTAS
Sbjct: 84 IYAVVFQQKKTAS 96

[Close]

BLAST of MS004640 vs. TAIR 10
Match: AT1G72020.1 (unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 4.8e-24
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  TANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVP 60
          +  R FHSTG K+M G  HG  + YYLHAKHMYNLDRMK Q L M+LGVFTAFSIGV VP
Sbjct: 24 SVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSLGVFTAFSIGVGVP 83

Query: 61 IYAVIFQQKKTASG 75
          I+AV+FQQ+KT SG
Sbjct: 84 IFAVVFQQRKTQSG 97

The following BLAST results are available for this feature:

BLAST of MS004640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143637.1	3.1e-33	98.65	uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncha...	[more]
XP_038899385.1	9.1e-33	97.30	uncharacterized protein LOC120086696 [Benincasa hispida]	[more]
XP_011659116.1	2.9e-31	93.24	uncharacterized protein LOC101215354 [Cucumis sativus]	[more]
KAG6607652.1	8.5e-31	91.89	hypothetical protein SDJN03_00994, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004138643.2	1.4e-30	91.89	uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical ...	[more]

BLAST of MS004640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR70	1.5e-33	98.65	uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0LQ20	7.0e-31	91.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1	[more]
A0A6J1J2Q3	9.2e-31	91.89	uncharacterized protein LOC111480717 OS=Cucurbita maxima OX=3661 GN=LOC111480717...	[more]
A0A6J1EHC8	2.0e-30	90.54	uncharacterized protein LOC111433382 OS=Cucurbita moschata OX=3662 GN=LOC1114333...	[more]
A0A1S3B3R2	3.5e-30	91.78	uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=...	[more]

BLAST of MS004640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72020.1	4.8e-24	70.27	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36003:SF5	TONB-DEPENDENT HEME RECEPTOR A	coord: 2..74
None	No IPR available	PANTHER	PTHR36003	TONB-DEPENDENT HEME RECEPTOR A	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004640.1	MS004640.1	mRNA