Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTGCAGGAAGTTTGGACCCTATGTAGGATTTTCAGAAGAGTCTCATCTTTCAGAAAGTACACTCCATCAACAAATAACCCTAAGAACCAAAACAATATTATTATTAATAATCCAATACCAATTTCTGATCTCACACTCCAAAACCCTAATTATCATTCCAATACTATTTTCACCTCTAAATCCAACGCCACCTTCCCCTTTTCAACTCCCCTACATCATGAAACCAAGCCAAACCCTAATTCTCAACAACTCAACATCTTCAACCCTAACTTACCCCTATCCCATGCTATTTTCTTGGAACCCTCTTCTTCGTACCCGTCCAGCTTTCAGAACGACGTCGATGGAAAAGAAGGAAGAGACGATATCTTCACGAACAGAGGTTGGGATGAGCTCCGGCCTGTCGTGCAGTTCGCCGTCGATCCTTCTTCCCAACTATATGATTGTATA
mRNA sequence
AATGTGCAGGAAGTTTGGACCCTATGTAGGATTTTCAGAAGAGTCTCATCTTTCAGAAAGTACACTCCATCAACAAATAACCCTAAGAACCAAAACAATATTATTATTAATAATCCAATACCAATTTCTGATCTCACACTCCAAAACCCTAATTATCATTCCAATACTATTTTCACCTCTAAATCCAACGCCACCTTCCCCTTTTCAACTCCCCTACATCATGAAACCAAGCCAAACCCTAATTCTCAACAACTCAACATCTTCAACCCTAACTTACCCCTATCCCATGCTATTTTCTTGGAACCCTCTTCTTCGTACCCGTCCAGCTTTCAGAACGACGTCGATGGAAAAGAAGGAAGAGACGATATCTTCACGAACAGAGGTTGGGATGAGCTCCGGCCTGTCGTGCAGTTCGCCGTCGATCCTTCTTCCCAACTATATGATTGTATA
Coding sequence (CDS)
AATGTGCAGGAAGTTTGGACCCTATGTAGGATTTTCAGAAGAGTCTCATCTTTCAGAAAGTACACTCCATCAACAAATAACCCTAAGAACCAAAACAATATTATTATTAATAATCCAATACCAATTTCTGATCTCACACTCCAAAACCCTAATTATCATTCCAATACTATTTTCACCTCTAAATCCAACGCCACCTTCCCCTTTTCAACTCCCCTACATCATGAAACCAAGCCAAACCCTAATTCTCAACAACTCAACATCTTCAACCCTAACTTACCCCTATCCCATGCTATTTTCTTGGAACCCTCTTCTTCGTACCCGTCCAGCTTTCAGAACGACGTCGATGGAAAAGAAGGAAGAGACGATATCTTCACGAACAGAGGTTGGGATGAGCTCCGGCCTGTCGTGCAGTTCGCCGTCGATCCTTCTTCCCAACTATATGATTGTATA
Protein sequence
NVQEVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSNATFPFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFQNDVDGKEGRDDIFTNRGWDELRPVVQFAVDPSSQLYDCI
Homology
BLAST of MS004630 vs. NCBI nr
Match:
XP_022135374.1 (transcription factor JUNGBRUNNEN 1 [Momordica charantia])
HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 63
EVWTLCRIFRRV SFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN
Sbjct: 191 EVWTLCRIFRRVPSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 250
Query: 64 ATFPFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFQNDVDGKEGRDDI 123
T PFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSF+NDVDGKEGRDDI
Sbjct: 251 TTSPFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFRNDVDGKEGRDDI 310
Query: 124 FTNRGWDELRPVVQFAVDPSSQLYDCI 151
FTNRGWDELRPVVQFAVDPSSQLYDCI
Sbjct: 311 FTNRGWDELRPVVQFAVDPSSQLYDCI 337
BLAST of MS004630 vs. NCBI nr
Match:
XP_038899483.1 (transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida])
HSP 1 Score: 131.3 bits (329), Expect = 6.8e-27
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 63
EVWTLCRIF+R+ SF+KY P+ NN +NN NN L QNPN +SN IF SK N
Sbjct: 170 EVWTLCRIFKRIPSFKKYIPTNNNNVLKNNDDDNNNFNQVSLIPQNPN-NSNIIFNSKPN 229
Query: 64 ATF---PFSTPL-HHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFQNDVDGKEG 123
+ P+S L H ETKP P+ NL +A EPSS PSSF N VDG G
Sbjct: 230 TKYQSQPYSNDLIHLETKPKPS---------NLTPPYASSFEPSSICPSSFWNGVDGGGG 289
Query: 124 RDDIFT-NRGWDELRPVVQFAVDPSSQLYDCI 151
DD FT + GWDELRP+VQF VDPS QLY CI
Sbjct: 290 GDDNFTIDGGWDELRPIVQFVVDPSFQLYGCI 311
BLAST of MS004630 vs. NCBI nr
Match:
XP_038899484.1 (transcription factor JUNGBRUNNEN 1 isoform X2 [Benincasa hispida])
HSP 1 Score: 131.3 bits (329), Expect = 6.8e-27
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 63
EVWTLCRIF+R+ SF+KY P+ NN +NN NN L QNPN +SN IF SK N
Sbjct: 169 EVWTLCRIFKRIPSFKKYIPTNNNNVLKNNDDDNNNFNQVSLIPQNPN-NSNIIFNSKPN 228
Query: 64 ATF---PFSTPL-HHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFQNDVDGKEG 123
+ P+S L H ETKP P+ NL +A EPSS PSSF N VDG G
Sbjct: 229 TKYQSQPYSNDLIHLETKPKPS---------NLTPPYASSFEPSSICPSSFWNGVDGGGG 288
Query: 124 RDDIFT-NRGWDELRPVVQFAVDPSSQLYDCI 151
DD FT + GWDELRP+VQF VDPS QLY CI
Sbjct: 289 GDDNFTIDGGWDELRPIVQFVVDPSFQLYGCI 310
BLAST of MS004630 vs. NCBI nr
Match:
XP_004144678.1 (transcription factor JUNGBRUNNEN 1 [Cucumis sativus] >KAE8649789.1 hypothetical protein Csa_012595 [Cucumis sativus])
HSP 1 Score: 124.8 bits (312), Expect = 6.3e-25
Identity = 84/160 (52.50%), Postives = 95/160 (59.38%), Query Frame = 0
Query: 1 NVQEVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTS 60
N EVWTLCRI +R+ SF+KY P+ +N N N P P QNPN +SN IFTS
Sbjct: 172 NNAEVWTLCRILKRIPSFKKYIPTLHNNNNDNQ---TYPKP------QNPN-NSNIIFTS 231
Query: 61 KSNATF---PFSTPLHH----ETKPNPNSQQLNIFNPNLPL-SHAIFLEPSSSYPSSFQN 120
K F P+ST HH ETKP P Q + NPNL L S A E S SSF N
Sbjct: 232 KPKTNFQSQPYSTGHHHLIHLETKPKPFEQ---LTNPNLTLPSCASSFESSPICLSSFWN 291
Query: 121 DVDGKEGRDD--IFTNRGWDELRPVVQFAVDPSSQLYDCI 151
V+G+ G DD TN GWDELRPVVQFAVDPS QLY+CI
Sbjct: 292 GVEGEGGGDDDNFATNGGWDELRPVVQFAVDPSFQLYECI 318
BLAST of MS004630 vs. NCBI nr
Match:
XP_008466794.1 (PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Cucumis melo])
HSP 1 Score: 124.4 bits (311), Expect = 8.3e-25
Identity = 82/161 (50.93%), Postives = 94/161 (58.39%), Query Frame = 0
Query: 1 NVQEVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTS 60
N EVWTLCRIF+R+ SF+KY P+ NN N N P P QNPN +SN IFTS
Sbjct: 172 NNAEVWTLCRIFKRIPSFKKYIPTHNNNNNNNQ---TYPKP------QNPN-NSNIIFTS 231
Query: 61 KSNATF---PFSTPLH-----HETKPNPNSQQLNIFNPNLPLSHAI--FLEPSSSYPSSF 120
K F P+ST +H HETKP P Q + NPNL L E S SS
Sbjct: 232 KPKTNFQSQPYSTDIHHLIHLHETKPKPFEQ---LTNPNLTLPSCANSSFESSPICLSSL 291
Query: 121 QNDVDGKEGRDDIF-TNRGWDELRPVVQFAVDPSSQLYDCI 151
N V+G G DD F T+ GWDELRP+VQFAVDPS QLY+CI
Sbjct: 292 WNGVEGGGGGDDNFTTSGGWDELRPIVQFAVDPSFQLYECI 319
BLAST of MS004630 vs. ExPASy TrEMBL
Match:
A0A6J1C187 (transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC111007339 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 63
EVWTLCRIFRRV SFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN
Sbjct: 191 EVWTLCRIFRRVPSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 250
Query: 64 ATFPFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFQNDVDGKEGRDDI 123
T PFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSF+NDVDGKEGRDDI
Sbjct: 251 TTSPFSTPLHHETKPNPNSQQLNIFNPNLPLSHAIFLEPSSSYPSSFRNDVDGKEGRDDI 310
Query: 124 FTNRGWDELRPVVQFAVDPSSQLYDCI 151
FTNRGWDELRPVVQFAVDPSSQLYDCI
Sbjct: 311 FTNRGWDELRPVVQFAVDPSSQLYDCI 337
BLAST of MS004630 vs. ExPASy TrEMBL
Match:
A0A1S3CTC4 (transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 82/161 (50.93%), Postives = 94/161 (58.39%), Query Frame = 0
Query: 1 NVQEVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTS 60
N EVWTLCRIF+R+ SF+KY P+ NN N N P P QNPN +SN IFTS
Sbjct: 172 NNAEVWTLCRIFKRIPSFKKYIPTHNNNNNNNQ---TYPKP------QNPN-NSNIIFTS 231
Query: 61 KSNATF---PFSTPLH-----HETKPNPNSQQLNIFNPNLPLSHAI--FLEPSSSYPSSF 120
K F P+ST +H HETKP P Q + NPNL L E S SS
Sbjct: 232 KPKTNFQSQPYSTDIHHLIHLHETKPKPFEQ---LTNPNLTLPSCANSSFESSPICLSSL 291
Query: 121 QNDVDGKEGRDDIF-TNRGWDELRPVVQFAVDPSSQLYDCI 151
N V+G G DD F T+ GWDELRP+VQFAVDPS QLY+CI
Sbjct: 292 WNGVEGGGGGDDNFTTSGGWDELRPIVQFAVDPSFQLYECI 319
BLAST of MS004630 vs. ExPASy TrEMBL
Match:
A0A0A0L479 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 76/153 (49.67%), Postives = 87/153 (56.86%), Query Frame = 0
Query: 1 NVQEVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTS 60
N EVWTLCRI +R+ SF+KY P+ +N N N P P QNPN +SN IFTS
Sbjct: 172 NNAEVWTLCRILKRIPSFKKYIPTLHNNNNDNQ---TYPKP------QNPN-NSNIIFTS 231
Query: 61 KSNATF---PFSTPLHH----ETKPNPNSQQLNIFNPNLPL-SHAIFLEPSSSYPSSFQN 120
K F P+ST HH ETKP P Q + NPNL L S A E S SSF N
Sbjct: 232 KPKTNFQSQPYSTGHHHLIHLETKPKPFEQ---LTNPNLTLPSCASSFESSPICLSSFWN 291
Query: 121 DVDGKEGRDD--IFTNRGWDELRPVVQFAVDPS 144
V+G+ G DD TN GWDELRPVVQFA + S
Sbjct: 292 GVEGEGGGDDDNFATNGGWDELRPVVQFASNNS 311
BLAST of MS004630 vs. ExPASy TrEMBL
Match:
A0A5N5GDT3 (Transcription factor JUNGBRUNNEN 1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035633 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 57/155 (36.77%), Postives = 77/155 (49.68%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQ-NPNYHSNTIFTSKS 63
EVWTLCRIF+R+ S+RKYTP + NP S T + + +
Sbjct: 173 EVWTLCRIFKRIPSYRKYTPDCKESTTR-----QNPTDSSSKTCSFESGIYCSELHVGLE 232
Query: 64 NATF---PFSTPLHHETKPNPNSQQLN-----IFNPNLPLSHAIFLEPSSSYPSSFQNDV 123
++ F S P+H + + + + L I++P P ++ SSF+N
Sbjct: 233 DSVFQRIERSKPIHVDEQVDETNHWLGGELDPIYDPT----------PFATTYSSFRNPG 292
Query: 124 DGKEGRDDIFTNRGWDELRPVVQFAVDPSSQLYDC 150
DG D FTN WDELRPVVQ AVDPSSQ+YDC
Sbjct: 293 DG-----DFFTNGNWDELRPVVQLAVDPSSQVYDC 307
BLAST of MS004630 vs. ExPASy TrEMBL
Match:
A0A498HF39 (NAC domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_027888 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 5.1e-12
Identity = 58/157 (36.94%), Postives = 76/157 (48.41%), Query Frame = 0
Query: 4 EVWTLCRIFRRVSSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 63
EVWTLCRIF+R+ S++KYTP I T QNP S+ + +S
Sbjct: 173 EVWTLCRIFKRIPSYKKYTPDC----------------IESTTKQNPTDSSSKTCSFESG 232
Query: 64 ATFPFSTPLHHETKPN-------PNSQQLNIFNPNL----PLSHAIFLEPSSSYPSSFQN 123
+ + + LH + + P Q++ N L L + P ++ SS N
Sbjct: 233 S---YCSELHFGLEDSVIQRIERPKPVQVDEANQWLVAVGELDSISYPTPFATTYSSLTN 292
Query: 124 DVDGKEGRDDIFTNRGWDELRPVVQFAVDPSSQLYDC 150
DG D FTN WDELRPVVQ AVDPSSQ+YDC
Sbjct: 293 LSDG-----DFFTNGNWDELRPVVQLAVDPSSQVYDC 305
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022135374.1 | 1.4e-77 | 97.28 | transcription factor JUNGBRUNNEN 1 [Momordica charantia] | [more] |
| XP_038899483.1 | 6.8e-27 | 53.29 | transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida] | [more] |
| XP_038899484.1 | 6.8e-27 | 53.29 | transcription factor JUNGBRUNNEN 1 isoform X2 [Benincasa hispida] | [more] |
| XP_004144678.1 | 6.3e-25 | 52.50 | transcription factor JUNGBRUNNEN 1 [Cucumis sativus] >KAE8649789.1 hypothetical ... | [more] |
| XP_008466794.1 | 8.3e-25 | 50.93 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C187 | 7.0e-78 | 97.28 | transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC11100733... | [more] |
| A0A1S3CTC4 | 4.0e-25 | 50.93 | transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... | [more] |
| A0A0A0L479 | 1.9e-19 | 49.67 | NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV... | [more] |
| A0A5N5GDT3 | 1.0e-12 | 36.77 | Transcription factor JUNGBRUNNEN 1-like OS=Pyrus ussuriensis x Pyrus communis OX... | [more] |
| A0A498HF39 | 5.1e-12 | 36.94 | NAC domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_027888 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
