MS004619 (gene) Bitter gourd (TR) v1

Overview


Name	MS004619
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	serine/arginine-rich splicing factor SR45
Location	scaffold995: 731855 .. 733714 (+)
RNA-Seq Expression	MS004619
Synteny	MS004619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAACCTTCTCCTGTACGCGAGTCCCTTGTTCTTCACATTGATGCACTTAGCAGGAATGTCCATGAGGGTCATTTAAGAGAAATATTCTGTATGTTTTTTCACTCGCTCTCTTAGTTTCTAAACAATTATCCTGATGGATAAATGAGCTTTTGTTTCCATATCATTTTATTTTATGTTACAAGAAGAATACATTAATTAAAACCAAAAAGTAAGACAAAAGTACAAGTTTTATTTGCCAACATGAGCATAGCTCAACTGGTTAAGGCATTATAATCTGGGCTAAAAGGTCAAAGGATCGAATCCCCGATCCCACACATTGATGAGCTTAACCCAAAAAAAAGTGCAAGTTAGATTTCAAGCTTCAAGCCTTCAACACATCCTTTGAAAGATATAACTCTTTGACTTCATGCACTTAGTATTTTTGTCTTACAAGAAAGACTTGGTATACCTGTTTGTTGGTAATGATACTTGACTATGTTGTTTCATTGGATAGGTATTAATTATTTTGTAAATTTCATATCATCAATGAAATTGTTTCCTATCCAAAAGAAATATACTTTACTATGTTGTTTTGTCCTTAAAAATGATTTATTTGCTATATTGATTGCTCTTCATCACCTCTGTTTGGTTAAGTCACTGCTTGCACATTCCTTCCTTTTCTCTCAACTATTTTTAAATTTTAGATTGGTTATTTTCATAAATTTTATAGCATATAATTAGTTAATTTATTAGTCACGTTTAATCAGATGGGTCATCTTCGAAGGTGAATTTTCCTCCAAAAATCTCTTTATGGTTAATCCTGATGATTAGAGAAGTGAGTAGGTAATCTGTTACATTTGTTTTTTTCCAGCTCTTATGAATTTCAATTTTATGCCCTCTAGGTAACTTTGGCGAAGTAGTCAATGTTGAGCTGGCAATGGATCGTACAGTGAGTTTGCACCATGCACGTTATATTTAAAGATCTTTTTCTTCAACAATACATTAATGCATCTGTTTAAAATGCTTATAGGTCAATCTTCCTAAAGGTTATGGATATGTTGAATTCAAAACGAGACCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGTAGGTTTTTCTAATAAATTCCACACGAGAATTTGAAATGCATCTATTGATAATGTCGTATCCATGGGAGTTGATTGTGCTGATTGGCTAATGTAGGCTCAAATTGATGGAAATGTTATTAGAGTGAGATTTACATTACCTCAAAGACAGAAGATGCCGACTCCTCCAAGGACTGTGGCGATTGCTCCAAAGAGAGATGGTCCCAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGATGACATGAAAAGACAGAGAGAACGTATAACTCTTAATAAGTCCAAATGCTTTTGCTTATTATACTATTTTTTTATGGGAGTATATTATATTAGTAATTTATTTCTGATTTGAACATCAGCTTCACCTCGTCGAAAACCTCCTTCACCTAGAAGGCGCTCACCGGTAGCTCGACGTGGTGGGTCTCCCCCTAGAAGACAACCCGATTCTCCACGCCGCCGTCCAGAGTCTCCTCCACGCCGCCGTGTCGAATCTCCTTTCCGTCGTGATTCTCCACCTAGAAGGAGGCCTGCATCGCCGATTAGAGGCCGTTCTCCATCCCCTTTGCCAAGGCGACATAGATCTCCTCCAAGGTTGGCCAATCATCCCCTGCCCCCAATACAACCCACACACACAAAATACCTTTTTTTTCTTTACATGGTGGTTTGAGTAGCATCAGTATTGCTGAATTTTGGTTGATTAGGCCTTCTCCAAGAAGAATTCGTGGCAGTCCCGTTCGAAGACGTTCCCCACCTCCTCCTAGGCGCCGG

mRNA sequence

AGGAAACCTTCTCCTGTACGCGAGTCCCTTGTTCTTCACATTGATGCACTTAGCAGGAATGTCCATGAGGGTCATTTAAGAGAAATATTCTGTAACTTTGGCGAAGTAGTCAATGTTGAGCTGGCAATGGATCGTACAGTCAATCTTCCTAAAGGTTATGGATATGTTGAATTCAAAACGAGACCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCTCAAATTGATGGAAATGTTATTAGAGTGAGATTTACATTACCTCAAAGACAGAAGATGCCGACTCCTCCAAGGACTGTGGCGATTGCTCCAAAGAGAGATGGTCCCAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAACCTCCTTCACCTAGAAGGCGCTCACCGGTAGCTCGACGTGGTGGGTCTCCCCCTAGAAGACAACCCGATTCTCCACGCCGCCGTCCAGAGTCTCCTCCACGCCGCCGTGTCGAATCTCCTTTCCGTCGTGATTCTCCACCTAGAAGGAGGCCTGCATCGCCGATTAGAGGCCGTTCTCCATCCCCTTTGCCAAGGCGACATAGATCTCCTCCAAGGCCTTCTCCAAGAAGAATTCGTGGCAGTCCCGTTCGAAGACGTTCCCCACCTCCTCCTAGGCGCCGG

Coding sequence (CDS)

AGGAAACCTTCTCCTGTACGCGAGTCCCTTGTTCTTCACATTGATGCACTTAGCAGGAATGTCCATGAGGGTCATTTAAGAGAAATATTCTGTAACTTTGGCGAAGTAGTCAATGTTGAGCTGGCAATGGATCGTACAGTCAATCTTCCTAAAGGTTATGGATATGTTGAATTCAAAACGAGACCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCTCAAATTGATGGAAATGTTATTAGAGTGAGATTTACATTACCTCAAAGACAGAAGATGCCGACTCCTCCAAGGACTGTGGCGATTGCTCCAAAGAGAGATGGTCCCAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAACCTCCTTCACCTAGAAGGCGCTCACCGGTAGCTCGACGTGGTGGGTCTCCCCCTAGAAGACAACCCGATTCTCCACGCCGCCGTCCAGAGTCTCCTCCACGCCGCCGTGTCGAATCTCCTTTCCGTCGTGATTCTCCACCTAGAAGGAGGCCTGCATCGCCGATTAGAGGCCGTTCTCCATCCCCTTTGCCAAGGCGACATAGATCTCCTCCAAGGCCTTCTCCAAGAAGAATTCGTGGCAGTCCCGTTCGAAGACGTTCCCCACCTCCTCCTAGGCGCCGG

Protein sequence

RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR

Homology

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BLAST of MS004619 vs. NCBI nr
Match: XP_022136031.1 (serine/arginine-rich splicing factor SR45 isoform X2 [Momordica charantia])

HSP 1 Score: 429.9 bits (1104), Expect = 1.4e-116
Identity = 227/228 (99.56%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT
Sbjct: 102 RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 161

Query: 61  RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEK 120
           RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGA+AEK
Sbjct: 162 RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGANAEK 221

Query: 121 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP 180
           DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP
Sbjct: 222 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP 281

Query: 181 PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 282 PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 329

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BLAST of MS004619 vs. NCBI nr
Match: XP_022136021.1 (serine/arginine-rich splicing factor SR45 isoform X1 [Momordica charantia])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 102 RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 161

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 162 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 221

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 222 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 281

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 282 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 334

[Close]

BLAST of MS004619 vs. NCBI nr
Match: XP_022136048.1 (serine/arginine-rich splicing factor SR45 isoform X4 [Momordica charantia])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 77  RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 136

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 137 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 196

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 197 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 256

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 257 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 309

[Close]

BLAST of MS004619 vs. NCBI nr
Match: XP_022136040.1 (serine/arginine-rich splicing factor SR45 isoform X3 [Momordica charantia])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 79  RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 138

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 139 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 198

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 199 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 258

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 259 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 311

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BLAST of MS004619 vs. NCBI nr
Match: XP_031740559.1 (serine/arginine-rich splicing factor SR45 [Cucumis sativus] >KAE8649784.1 hypothetical protein Csa_012847 [Cucumis sativus])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 217/230 (94.35%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIF NFGEVVNVELAMDRTVNLPKGYGYVEFKT
Sbjct: 98  RKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKT 157

Query: 61  RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEK 120
           R DAEKAQVYMDGAQIDGNVIR RFTLPQRQKMPTPPRTVA  PKRDGPKPENVG DAEK
Sbjct: 158 RSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEK 217

Query: 121 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDS- 180
           DDMKRQREPSPRRKPPSPRRRSPVARRGGS PRRQPDSPRRRP+SPPRRR+ESPFRRDS 
Sbjct: 218 DDMKRQREPSPRRKPPSPRRRSPVARRGGS-PRRQPDSPRRRPDSPPRRRIESPFRRDSP 277

Query: 181 PPRRRPASPIR-GRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           PPRRRPASP+R GRSPSPL RRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 278 PPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 326

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BLAST of MS004619 vs. ExPASy Swiss-Prot
Match: Q9SEE9 (Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.6e-69
Identity = 160/227 (70.48%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 6   VRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAE 65
           V+ESLVLH+D+LSRNV+E HL+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R DAE
Sbjct: 94  VQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAE 153

Query: 66  KAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKD-DMK 125
           KAQ+YMDGAQIDG V++  FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEKD   +
Sbjct: 154 KAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPR 213

Query: 126 RQREPSPRRKPP-SPRRRSPVARRGGSPPRRQPDSP-RRRPESPPRRRVESPFRRDSPPR 185
           R RE SP+RK   SPRRRSP+ RRG SP RR PDSP RRRP SP RR      R D+PPR
Sbjct: 214 RPRETSPQRKTGLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRR------RGDTPPR 273

Query: 186 RRPASPIRGRSP-SPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRPASP RGRSP SP PRR+RSPPR SPRRIRGSPVRRRSP P RRR
Sbjct: 274 RRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 314

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BLAST of MS004619 vs. ExPASy Swiss-Prot
Match: Q15287 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-VNLPKGYGYVEFK 60
           R PSP  +   +HI  L+RNV + H+ EIF  +G++  +++ ++R   +L KGY YVEF+
Sbjct: 154 RSPSP--KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE 213

Query: 61  TRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAE 120
              +AEKA  +MDG QIDG  I     L      P PP      P+R  P P        
Sbjct: 214 NPDEAEKALKHMDGGQIDGQEITATAVL---APWPRPPPRRFSPPRRMLPPP-------- 273

Query: 121 KDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQ 156
              M R+  P  RR+  SPRRRSPV RR  SP RR+
Sbjct: 274 --PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRR 294

[Close]

BLAST of MS004619 vs. ExPASy Swiss-Prot
Match: Q4R5N1 (RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis OX=9541 GN=RNPS1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-VNLPKGYGYVEFK 60
           R PSP  +   +HI  L+RNV + H+ EIF  +G++  +++ ++R   +L KGY YVEF+
Sbjct: 154 RSPSP--KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE 213

Query: 61  TRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAE 120
              +AEKA  +MDG QIDG  I     L      P PP      P+R  P P        
Sbjct: 214 NPDEAEKALKHMDGGQIDGQEITATAVL---APWPRPPPRRFSPPRRMLPPP-------- 273

Query: 121 KDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQ 156
              M R+  P  RR+  SPRRRSPV RR  SP RR+
Sbjct: 274 --PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRR 294

[Close]

BLAST of MS004619 vs. ExPASy Swiss-Prot
Match: Q99M28 (RNA-binding protein with serine-rich domain 1 OS=Mus musculus OX=10090 GN=Rnps1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-VNLPKGYGYVEFK 60
           R PSP  +   +HI  L+RNV + H+ EIF  +G++  +++ ++R   +L KGY YVEF+
Sbjct: 154 RSPSP--KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE 213

Query: 61  TRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAE 120
              +AEKA  +MDG QIDG  I     L      P PP      P+R  P P        
Sbjct: 214 NPDEAEKALKHMDGGQIDGQEITATAVL---APWPRPPPRRFSPPRRMLPPP-------- 273

Query: 121 KDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQ 156
              M R+  P  RR+  SPRRRSPV RR  SP RR+
Sbjct: 274 --PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRR 294

[Close]

BLAST of MS004619 vs. ExPASy Swiss-Prot
Match: Q5NVM8 (RNA-binding protein with serine-rich domain 1 OS=Pongo abelii OX=9601 GN=RNPS1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-VNLPKGYGYVEFK 60
           R PSP  +   +HI  L+RNV + H+ EIF  +G++  +++ ++R   +L KGY YVEF+
Sbjct: 154 RSPSP--KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE 213

Query: 61  TRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAE 120
              +AEKA  +MDG QIDG  I     L      P PP      P+R  P P        
Sbjct: 214 NPDEAEKALKHMDGGQIDGQEITATAVL---APWPRPPPRRFSPPRRMLPPP-------- 273

Query: 121 KDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQ 156
              M R+  P  RR+  SPRRRSPV RR  SP RR+
Sbjct: 274 --PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRR 294

[Close]

BLAST of MS004619 vs. ExPASy TrEMBL
Match: A0A6J1C2D4 (serine/arginine-rich splicing factor SR45 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007818 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 6.8e-117
Identity = 227/228 (99.56%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT
Sbjct: 102 RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 161

Query: 61  RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEK 120
           RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGA+AEK
Sbjct: 162 RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGANAEK 221

Query: 121 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP 180
           DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP
Sbjct: 222 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSP 281

Query: 181 PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 282 PRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 329

[Close]

BLAST of MS004619 vs. ExPASy TrEMBL
Match: A0A6J1C2R4 (serine/arginine-rich splicing factor SR45 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007818 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.9e-115
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 79  RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 138

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 139 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 198

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 199 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 258

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 259 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 311

[Close]

BLAST of MS004619 vs. ExPASy TrEMBL
Match: A0A6J1C6J2 (serine/arginine-rich splicing factor SR45 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007818 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.9e-115
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 77  RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 136

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 137 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 196

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 197 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 256

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 257 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 309

[Close]

BLAST of MS004619 vs. ExPASy TrEMBL
Match: A0A6J1C2C4 (serine/arginine-rich splicing factor SR45 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007818 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.9e-115
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT-----VNLPKGYGY 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRT     VNLPKGYGY
Sbjct: 102 RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVSLHHVNLPKGYGY 161

Query: 61  VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 120
           VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG
Sbjct: 162 VEFKTRPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVG 221

Query: 121 ADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 180
           A+AEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF
Sbjct: 222 ANAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPF 281

Query: 181 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 282 RRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 334

[Close]

BLAST of MS004619 vs. ExPASy TrEMBL
Match: A0A0A0KZM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.3e-107
Identity = 217/230 (94.35%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 1   RKPSPVRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKT 60
           RKPSPVRESLVLHIDALSRNVHEGHLREIF NFGEVVNVELAMDRTVNLPKGYGYVEFKT
Sbjct: 98  RKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKT 157

Query: 61  RPDAEKAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEK 120
           R DAEKAQVYMDGAQIDGNVIR RFTLPQRQKMPTPPRTVA  PKRDGPKPENVG DAEK
Sbjct: 158 RSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEK 217

Query: 121 DDMKRQREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDS- 180
           DDMKRQREPSPRRKPPSPRRRSPVARRGGS PRRQPDSPRRRP+SPPRRR+ESPFRRDS 
Sbjct: 218 DDMKRQREPSPRRKPPSPRRRSPVARRGGS-PRRQPDSPRRRPDSPPRRRIESPFRRDSP 277

Query: 181 PPRRRPASPIR-GRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           PPRRRPASP+R GRSPSPL RRHRSPPRPSPRRIRGSPVRRRSPPPPRRR
Sbjct: 278 PPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 326

[Close]

BLAST of MS004619 vs. TAIR 10
Match: AT1G16610.1 (arginine/serine-rich 45 )

HSP 1 Score: 261.9 bits (668), Expect = 4.7e-70
Identity = 160/227 (70.48%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 6   VRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAE 65
           V+ESLVLH+D+LSRNV+E HL+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R DAE
Sbjct: 94  VQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAE 153

Query: 66  KAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKD-DMK 125
           KAQ+YMDGAQIDG V++  FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEKD   +
Sbjct: 154 KAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPR 213

Query: 126 RQREPSPRRKPP-SPRRRSPVARRGGSPPRRQPDSP-RRRPESPPRRRVESPFRRDSPPR 185
           R RE SP+RK   SPRRRSP+ RRG SP RR PDSP RRRP SP RR      R D+PPR
Sbjct: 214 RPRETSPQRKTGLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRR------RGDTPPR 273

Query: 186 RRPASPIRGRSP-SPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRPASP RGRSP SP PRR+RSPPR SPRRIRGSPVRRRSP P RRR
Sbjct: 274 RRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 314

[Close]

BLAST of MS004619 vs. TAIR 10
Match: AT1G16610.3 (arginine/serine-rich 45 )

HSP 1 Score: 261.9 bits (668), Expect = 4.7e-70
Identity = 160/227 (70.48%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 6   VRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAE 65
           V+ESLVLH+D+LSRNV+E HL+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R DAE
Sbjct: 94  VQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAE 153

Query: 66  KAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKD-DMK 125
           KAQ+YMDGAQIDG V++  FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEKD   +
Sbjct: 154 KAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPR 213

Query: 126 RQREPSPRRKPP-SPRRRSPVARRGGSPPRRQPDSP-RRRPESPPRRRVESPFRRDSPPR 185
           R RE SP+RK   SPRRRSP+ RRG SP RR PDSP RRRP SP RR      R D+PPR
Sbjct: 214 RPRETSPQRKTGLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRR------RGDTPPR 273

Query: 186 RRPASPIRGRSP-SPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           RRPASP RGRSP SP PRR+RSPPR SPRRIRGSPVRRRSP P RRR
Sbjct: 274 RRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 314

[Close]

BLAST of MS004619 vs. TAIR 10
Match: AT1G16610.2 (arginine/serine-rich 45 )

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-68
Identity = 156/225 (69.33%), Postives = 179/225 (79.56%), Query Frame = 0


Query: 6   VRESLVLHIDALSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAE 65
           V+ESLVLH+D+LSRNV+E HL+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R DAE
Sbjct: 94  VQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAE 153

Query: 66  KAQVYMDGAQIDGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKDDMKR 125
           KAQ+YMDGAQIDG V++  FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEKD   R
Sbjct: 154 KAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPR 213

Query: 126 QREPSPRRKPPSPRRRSPVARRGGSPPRRQPDSP-RRRPESPPRRRVESPFRRDSPPRRR 185
           +    PR +  SPRRRSP+ RRG SP RR PDSP RRRP SP RR      R D+PPRRR
Sbjct: 214 R----PRER-LSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRR------RGDTPPRRR 273

Query: 186 PASPIRGRSP-SPLPRRHRSPPRPSPRRIRGSPVRRRSPPPPRRR 229
           PASP RGRSP SP PRR+RSPPR SPRRIRGSPVRRRSP P RRR
Sbjct: 274 PASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 307

[Close]

BLAST of MS004619 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-05
Identity = 72/232 (31.03%), Postives = 99/232 (42.67%), Query Frame = 0


Query: 17  LSRNVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAEKAQVYMDGAQI 76
           L  +  +  LR  F  FG V ++ L  D     P+G+G+++F    DA +A+  MDG  +
Sbjct: 44  LRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLL 103

Query: 77  DGNVIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKDDMKRQREPSPRR--- 136
            G  + V F    R+K PT  RT      RD     N   D  +   +  R P PRR   
Sbjct: 104 LGRELTVVFAEENRKK-PTEMRT------RDRGGRSNRFQDRRRSPPRYSRSPPPRRGRR 163

Query: 137 ---------KPPSPRRRSPVARRGGSPPRRQPDSPRRRPESPP--------------RRR 196
                     PP+ R +S    R  SP  R+ +  R    SPP              +  
Sbjct: 164 SRSRSRGYNSPPAKRHQS----RSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSH 223

Query: 197 VESPFRRDSPPRRRPASPIRGRSPSPLPRRHRSPPRPSPRRIRGSPVRRRSP 223
             SP R  SP + R  +P + RS SP+PR+ RS P P P   RG+    RSP
Sbjct: 224 SRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRS-PTPVP---RGAQNGDRSP 260

[Close]

BLAST of MS004619 vs. TAIR 10
Match: AT2G29210.1 (splicing factor PWI domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.0e-04
Identity = 60/142 (42.25%), Postives = 75/142 (52.82%), Query Frame = 0


Query: 88  PQRQKMPTPPRTVAIAPKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARR 147
           P+R+++ +P R+ + +P R   +P + G        +R+R PS    PP+ RRRSP    
Sbjct: 272 PRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPS----PPARRRRSP---- 331

Query: 148 GGSPPRRQPDSPRRRPESPPRRRVESPFRRDSPPRRRPASPIRGRSPSPLPRRHRSPPRP 207
             SPP R     RRR  SPP RR  SP    +PP R      + RSPSP  RRHRSPP  
Sbjct: 332 --SPPAR-----RRRSPSPPARRHRSP----TPPAR------QRRSPSPPARRHRSPPPA 388

Query: 208 SPRRIRGSPV-RRRSPPPPRRR 229
             RR    P  RRRSP PP RR
Sbjct: 392 RRRRSPSPPARRRRSPSPPARR 388

The following BLAST results are available for this feature:

BLAST of MS004619 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136031.1	1.4e-116	99.56	serine/arginine-rich splicing factor SR45 isoform X2 [Momordica charantia]	[more]
XP_022136021.1	1.0e-114	97.42	serine/arginine-rich splicing factor SR45 isoform X1 [Momordica charantia]	[more]
XP_022136048.1	1.0e-114	97.42	serine/arginine-rich splicing factor SR45 isoform X4 [Momordica charantia]	[more]
XP_022136040.1	1.0e-114	97.42	serine/arginine-rich splicing factor SR45 isoform X3 [Momordica charantia]	[more]
XP_031740559.1	1.7e-106	94.35	serine/arginine-rich splicing factor SR45 [Cucumis sativus] >KAE8649784.1 hypoth...	[more]

BLAST of MS004619 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE9	6.6e-69	70.48	Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR4...	[more]
Q15287	2.9e-16	40.38	RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 P...	[more]
Q4R5N1	2.9e-16	40.38	RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis OX=9541 GN=...	[more]
Q99M28	2.9e-16	40.38	RNA-binding protein with serine-rich domain 1 OS=Mus musculus OX=10090 GN=Rnps1 ...	[more]
Q5NVM8	2.9e-16	40.38	RNA-binding protein with serine-rich domain 1 OS=Pongo abelii OX=9601 GN=RNPS1 P...	[more]

BLAST of MS004619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2D4	6.8e-117	99.56	serine/arginine-rich splicing factor SR45 isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1C2R4	4.9e-115	97.42	serine/arginine-rich splicing factor SR45 isoform X3 OS=Momordica charantia OX=3...	[more]
A0A6J1C6J2	4.9e-115	97.42	serine/arginine-rich splicing factor SR45 isoform X4 OS=Momordica charantia OX=3...	[more]
A0A6J1C2C4	4.9e-115	97.42	serine/arginine-rich splicing factor SR45 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A0A0KZM9	8.3e-107	94.35	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV...	[more]

BLAST of MS004619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16610.1	4.7e-70	70.48	arginine/serine-rich 45	[more]
AT1G16610.3	4.7e-70	70.48	arginine/serine-rich 45	[more]
AT1G16610.2	4.4e-68	69.33	arginine/serine-rich 45	[more]
AT3G13570.1	6.9e-05	31.03	SC35-like splicing factor 30A	[more]
AT2G29210.1	2.0e-04	42.25	splicing factor PWI domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..84 e-value: 1.3E-18 score: 77.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 14..82 e-value: 3.6E-13 score: 49.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..88 score: 15.95436
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..94 e-value: 4.7E-21 score: 77.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..228
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 4..228
None	No IPR available	PANTHER	PTHR15481:SF9	BNAA09G56240D PROTEIN	coord: 4..228
IPR034201	RNPS1, RNA recognition motif	CDD	cd12365	RRM_RNPS1	coord: 12..84 e-value: 1.89819E-37 score: 123.82
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004619.1	MS004619.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding