MS004599 (gene) Bitter gourd (TR) v1

Overview


Name	MS004599
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	At4g19430
Location	scaffold995: 590738 .. 591031 (-)
RNA-Seq Expression	MS004599
Synteny	MS004599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTTGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

mRNA sequence

GAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTTGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

Coding sequence (CDS)

GAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTTGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

Protein sequence

ERERSGHCAYREMVSELGDGKGKRRKRRKKTQFGAVFQLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM

Homology

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BLAST of MS004599 vs. NCBI nr
Match: KAG6608012.1 (hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   ERERSGHCAYRE----MVSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 60
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRREKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 61  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 99
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T  +MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of MS004599 vs. NCBI nr
Match: XP_022940822.1 (uncharacterized protein LOC111446301 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   ERERSGHCAYRE----MVSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 60
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 61  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 99
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T  +MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of MS004599 vs. NCBI nr
Match: TYK01842.1 (hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 6.0e-24
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RER+G+ +Y+E+   +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDAYED ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 87  AKAFYNECCCDAYEDERMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of MS004599 vs. NCBI nr
Match: KAA0052276.1 (hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 6.0e-24
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RER+G+ +Y+E+   +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDAYED ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 87  AKAFYNECCCDAYEDERMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of MS004599 vs. NCBI nr
Match: KGN55571.1 (hypothetical protein Csa_012627 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-23
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RE +G+ +Y+++    E G+ KG +RRKRRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIV--EVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDA+ED ++   EV  +DPYFSMP LP T  +MANCM
Sbjct: 87  AKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYT--TMANCM 130

[Close]

BLAST of MS004599 vs. ExPASy TrEMBL
Match: A0A6J1FKP2 (uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC111446301 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.8e-25
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   ERERSGHCAYRE----MVSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 60
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 61  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 99
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T  +MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of MS004599 vs. ExPASy TrEMBL
Match: A0A5A7UDK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001040 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RER+G+ +Y+E+   +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDAYED ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 87  AKAFYNECCCDAYEDERMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of MS004599 vs. ExPASy TrEMBL
Match: A0A5D3BSQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00900 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RER+G+ +Y+E+   +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDAYED ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 87  AKAFYNECCCDAYEDERMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of MS004599 vs. ExPASy TrEMBL
Match: A0A0A0L609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   ERERSGHCAYREMV--SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRK 60
           +RE +G+ +Y+++    E G+ KG +RRKRRKK QFG    V  +N WYF STISHILRK
Sbjct: 27  KRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFWYFTSTISHILRK 86

Query: 61  AKAFYNECCCDAYEDGKIV--EVTLVDPYFSMPALPCTSYSMANCM 99
           AKAFYNECCCDA+ED ++   EV  +DPYFSMP LP T  +MANCM
Sbjct: 87  AKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYT--TMANCM 130

[Close]

BLAST of MS004599 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 23  KRRKRRKKTQFGAVF--QLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIV--EVTLV 82
           K   R+KK    A+   +L +WY  S+IS+ILRKAKAFYNECCCDA+ED  ++  +VTLV
Sbjct: 40  KYMPRKKKPGHWALQFPRLGIWYMTSSISYILRKAKAFYNECCCDAFEDPVLMGKQVTLV 99

Query: 83  DPYFSMPALP 89
           D YFS P +P
Sbjct: 100 DSYFSTPVVP 109

[Close]

BLAST of MS004599 vs. TAIR 10
Match: AT4G19430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 41  LWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPAL 88
           LWY   +ISHILRKA+AFYNE CCD Y +   + V  V+PYFS+P +
Sbjct: 115 LWYMKCSISHILRKARAFYNEFCCDTYAESNTMAV--VEPYFSIPVI 159

The following BLAST results are available for this feature:

BLAST of MS004599 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608012.1	1.2e-24	60.71	hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940822.1	1.2e-24	60.71	uncharacterized protein LOC111446301 [Cucurbita moschata]	[more]
TYK01842.1	6.0e-24	60.58	hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa]	[more]
KAA0052276.1	6.0e-24	60.58	hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa]	[more]
KGN55571.1	3.0e-23	59.43	hypothetical protein Csa_012627 [Cucumis sativus]	[more]

BLAST of MS004599 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKP2	5.8e-25	60.71	uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A5A7UDK1	2.9e-24	60.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSQ8	2.9e-24	60.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L609	1.4e-23	59.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1	[more]
A0A1Q3D8H6	3.7e-11	55.71	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]

BLAST of MS004599 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19430.1	1.4e-10	57.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004599.1	MS004599.1	mRNA