MS004265 (gene) Bitter gourd (TR) v1

Overview


Name	MS004265
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box domain-containing protein
Location	scaffold92: 1325141 .. 1328218 (+)
RNA-Seq Expression	MS004265
Synteny	MS004265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAGTGCAAGAAATTAAGCAGAGAAAGTGGAAGAGAAAAGGCACTTCATGTTCATCCTCCTCGGCTCGTATAAACAATTTGGACGATGGCTGTTTAATGCATATATTCAGCTTCCTTTCCCCCATACCAGGTACCTTTCAATTTGCTATCTGAAATTCTATTCCTTCAATTTTTGGTCCTATTCCGTTTTGAGGTTTTTGGTTTCCTGTTCAAGTTGATTCATTTCGCTGAAATTGAAGGACTTATCCGTTCAATTTGCAAAACCGGGAGGTTATCTGGAGGAAATTTTGAAACCTTGGGTGAAAAACCATTCGATTATAGGAGAAATCGATAGAGTGGACTTTTGAAATCTTTTGGATACTGCTGGAATTAGATTACCGGAAGAAGAAGAATTGTAATTTCGGGTTTGACATGAGTCGGGAATTATTGTTTACTTGTTCCTGTTAGAAAACCTATTGGATAAAAAGATGGGATGCTTGGTTTCTTTACGTTGGACCCATTGGAGTCTATAATTGGGCCTTTTTGGTTTTCGTTAGGTGTGGTTTAGGAGAATTTTTGGACTTTGGATATGAAGAGGTTGGATACTTTGTTATACGATGGCTGAATGCTGATGCAGTTGTTGTTGCTGTATTGCCCTACCTTCCATCAGCTGGTGTATTGTGCCTTTGTGGTCGAGTTGCGAACCAATTGGGGGCGAGGGATAAGAAAAATTTGGAAACAAAAGTGAAGATGTTGATGAAGTTTAAGATGAAGCTAAATATAATTCTTACTGAAACTGATGCTCTAGAATGCCATTTTCTTCTCTCTAGTTATTTTGCTTAGTCTAGTGAGAAAATTTTGTATCGTTAGTTTCATCGAGTTGTAGTTAAGTGGATGCGGTCCGCTTATTTCTTTCTAATTTTAATTGGTAGTAAGTTTTGTTGCGCACGTTTTTAGAAAAAGGATTCTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTCGGCTGTGGCTGCGGGTAGAACGATCTATTAAAGATTTATCTGAGTCTGGAGTTTTCCCAACTATTGAGGCAGCTGTTGCTGCTGCAAGGTAAGTTTTTTAATGTCCATGTTTTTACTTTTCAAGAGAGGAAATAATAAAAGTAGGTTGCTAATAGAGTCTGAAATTGAATGATTTTGTTCTCCATAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGGTATGTTCTTTTTTGTTCCCTTTTTTTTTCTGCTTGGTAGTGACATTTTACTCCTCATATATTGTTTAAATGTCATCCATTTTTTTGTAATGAACCAGACTTTCATTGAGAAAACAAAATATGAAAGAGAACGAAGACAATGGGACATATAAAAGACAACCTAAAGACGGGAATATAAGAGGGGACTCCAACTCAAATTAATATGACCTAAAGAATAAGAACAAAACTCCTTAGTAACCGACGCCCAATCTAGCAAGACACTACACCATCTCTGGAGATTTCTCCCAATCCCTAAATGTTCTATTGTTCCTTTCCAACCAAAGACTCCAAATCACTGCAAAAAGTTTAAATGTCGTCAAATTGTCAGAAATATCTGTTTGTTTGTGCATAATTTAGGTCTCCTTTCAAAGAATAAGTGCCTTGTTATGTTATAATGTGCTAGGATTGTTTACTGATACCAAACAGTCTCTTTAAAGGTCACTATATAGAGCTAGAAGCTAGTTAGCTATTTGGGTTCTGGCTATTCAGCTTTAAAGAAACCTTAGCAGAATTTTTTTCTCTTTTCGATTAGAAACCGAATAACTATTCTGTTTTAAATATTGGTGAGACGGTGGCTTCCTTGTCAAGACGTGCCCAGTTTTTGGACTATAAGATCTTTTAACTTCAAAATTTTTAGTACCCTGTATACTTCTTTTGTTCCATTATGTTCCATCATATTAAAGATTTTCACCTGACATTTTTTGCTGAACTTATGAGTTATGACACACGATAACACCTTCATATAGAACCTAAGTCTCACTATTTTCCATCATTTTCTTAACTCAAAGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACGCTTTTCTGCACTCGTGGTTCGGAAAGGTACACGTTCATAACATATAGTGTAATTTGGAATTGTGATCCTAGAGGTGTTGTCTCCATTCTAACATCTTCAAGAGATCATTTATCATCATCCATTTGGACTTGCTATTGTTATTGATGGTTCTCTAATCTAATTCACCATTTACTTCAAGCTGACTTTGCTCGACGAATATATCATGTTATCATTAAAATATAATAATTTAATCTGGTATTTGAACTTTTGAAAGATCTAATTTAGCGTTAAACTTTCAGAAAGTAACCACTTTGATATTTGTGATTATTTTGCCACCTAATGTACCTATGTGGCTCCTATACATGTTCACATAGCACATTAGTACATATTCTCGAAGCCATTTTCTGCATTCATAAAAAGCAAAAGACTAAAATGATCGACTACGATAGCCGTTTTGAAAGGATAAAAATGGATATTTTGAAAATTCAAAGACCAAATCTTTGAACTATTTTATTTTAGGATTTGTAGAGGCAACTCATTATGTAATTTCTATTTCTTCTTAACAGTGCTTTGGAGTTCCTGTGTACCAGTAAACTTTCAAATTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTTCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTTCAGCAAATCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGCTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGTGCTAAAGCTGTCCTAACAAGCGAGGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTG

mRNA sequence

GTTTCAGTGCAAGAAATTAAGCAGAGAAAGTGGAAGAGAAAAGGCACTTCATGTTCATCCTCCTCGGCTCGTATAAACAATTTGGACGATGGCTGTTTAATGCATATATTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTCGGCTGTGGCTGCGGGTAGAACGATCTATTAAAGATTTATCTGAGTCTGGAGTTTTCCCAACTATTGAGGCAGCTGTTGCTGCTGCAAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACGCTTTTCTGCACTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTGTGTACCAGTAAACTTTCAAATTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTTCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTTCAGCAAATCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGCTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGTGCTAAAGCTGTCCTAACAAGCGAGGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTG

Coding sequence (CDS)

GTTTCAGTGCAAGAAATTAAGCAGAGAAAGTGGAAGAGAAAAGGCACTTCATGTTCATCCTCCTCGGCTCGTATAAACAATTTGGACGATGGCTGTTTAATGCATATATTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTCGGCTGTGGCTGCGGGTAGAACGATCTATTAAAGATTTATCTGAGTCTGGAGTTTTCCCAACTATTGAGGCAGCTGTTGCTGCTGCAAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACGCTTTTCTGCACTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTGTGTACCAGTAAACTTTCAAATTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTTCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTTCAGCAAATCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGCTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGTGCTAAAGCTGTCCTAACAAGCGAGGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTG

Protein sequence

VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYARTALFFWFDVEYKL

Homology

[Close]

BLAST of MS004265 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 518.5 bits (1334), Expect = 3.4e-143
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 241 YARTALFFWFDVEYKL 257
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of MS004265 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 239/256 (93.36%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 79  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258

Query: 241 YARTALFFWFDVEYKL 257
           YARTALFFWFDVEYKL
Sbjct: 259 YARTALFFWFDVEYKL 272

[Close]

BLAST of MS004265 vs. NCBI nr
Match: XP_022966937.1 (F-box protein SKIP5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 481.9 bits (1239), Expect = 3.5e-132
Identity = 236/255 (92.55%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 2   SVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC 61
           ++++ KQRKWKRKGT   SSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC
Sbjct: 6   TMEDNKQRKWKRKGT--PSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC 65

Query: 62  HPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIG 121
           HPRLWLRVERSIKDLSESGVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIG
Sbjct: 66  HPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIG 125

Query: 122 GGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 181
           GGELPEETTLFC+RGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN
Sbjct: 126 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 185

Query: 182 PLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIY 241
           PLDYLSCPIVC+A+PDKL  SSVKGGY DGVSVSQTRIEGGAKA+LTSEDLAL+HVRVIY
Sbjct: 186 PLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIY 245

Query: 242 ARTALFFWFDVEYKL 257
           ARTALFFWFDVE+KL
Sbjct: 246 ARTALFFWFDVEHKL 258

[Close]

BLAST of MS004265 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVER+IKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 79  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258

Query: 241 YARTALFFWFDVEYKL 257
           YARTAL FWFDVEYKL
Sbjct: 259 YARTALLFWFDVEYKL 272

[Close]

BLAST of MS004265 vs. NCBI nr
Match: XP_038889674.1 (F-box protein SKIP5 [Benincasa hispida])

HSP 1 Score: 477.6 bits (1228), Expect = 6.6e-131
Identity = 238/256 (92.97%), Postives = 243/256 (94.92%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGTS SS S  INNLDDGCLMHIFSFLSP+PDRYNTALVCHRWRYLA
Sbjct: 14  VSMEESKQRKWKRKGTSTSSPS--INNLDDGCLMHIFSFLSPMPDRYNTALVCHRWRYLA 73

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 74  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 133

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 134 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 193

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A PDKLLPSSV  GYT GVSVS TRIEGGAKAVLT +DLALQHVRVI
Sbjct: 194 NPLDYLSCPIVCTACPDKLLPSSVSRGYTHGVSVSHTRIEGGAKAVLTGDDLALQHVRVI 253

Query: 241 YARTALFFWFDVEYKL 257
           YARTALFFWFDVEYKL
Sbjct: 254 YARTALFFWFDVEYKL 267

[Close]

BLAST of MS004265 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.3e-93
Identity = 172/261 (65.90%), Postives = 204/261 (78.16%), Query Frame = 0


Query: 4   QEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 63
           + I + K K++    S +S  +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 16  ERIVESKMKKRMKPYSLTS--LNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHP 75

Query: 64  RLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 123
           RLWLRV+R +KDLS+ GVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGG
Sbjct: 76  RLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGG 135

Query: 124 ELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 183
           E+P+ETTL C RGS+SALE L T KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPL
Sbjct: 136 EIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPL 195

Query: 184 DYLSCPIVCSANPDKL--------LPSSVKGGY-TDGVSVSQTRIEGGAKAVLTSEDLAL 243
           D+LSCPIV +A  + +        +  +V G    + V+V QTRIEGGAKAV T  DL L
Sbjct: 196 DHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVL 255

Query: 244 QHVRVIYARTALFFWFDVEYK 256
           Q VRV+Y++  L+FWFDV+Y+
Sbjct: 256 QRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of MS004265 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.6e-143
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 241 YARTALFFWFDVEYKL 257
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of MS004265 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.8e-133
Identity = 239/256 (93.36%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 79  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258

Query: 241 YARTALFFWFDVEYKL 257
           YARTALFFWFDVEYKL
Sbjct: 259 YARTALFFWFDVEYKL 272

[Close]

BLAST of MS004265 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.7e-132
Identity = 236/255 (92.55%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 2   SVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC 61
           ++++ KQRKWKRKGT   SSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC
Sbjct: 6   TMEDNKQRKWKRKGT--PSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLAC 65

Query: 62  HPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIG 121
           HPRLWLRVERSIKDLSESGVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIG
Sbjct: 66  HPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIG 125

Query: 122 GGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 181
           GGELPEETTLFC+RGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN
Sbjct: 126 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 185

Query: 182 PLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIY 241
           PLDYLSCPIVC+A+PDKL  SSVKGGY DGVSVSQTRIEGGAKA+LTSEDLAL+HVRVIY
Sbjct: 186 PLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIY 245

Query: 242 ARTALFFWFDVEYKL 257
           ARTALFFWFDVE+KL
Sbjct: 246 ARTALFFWFDVEHKL 258

[Close]

BLAST of MS004265 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.4e-132
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVER+IKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 79  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258

Query: 241 YARTALFFWFDVEYKL 257
           YARTAL FWFDVEYKL
Sbjct: 259 YARTALLFWFDVEYKL 272

[Close]

BLAST of MS004265 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.4e-132
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 60
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78

Query: 61  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 120
           CHPRLWLRVER+IKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 79  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138

Query: 121 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 180
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198

Query: 181 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 240
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258

Query: 241 YARTALFFWFDVEYKL 257
           YARTAL FWFDVEYKL
Sbjct: 259 YARTALLFWFDVEYKL 272

[Close]

BLAST of MS004265 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-94
Identity = 172/261 (65.90%), Postives = 204/261 (78.16%), Query Frame = 0


Query: 4   QEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 63
           + I + K K++    S +S  +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 16  ERIVESKMKKRMKPYSLTS--LNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHP 75

Query: 64  RLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 123
           RLWLRV+R +KDLS+ GVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGG
Sbjct: 76  RLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGG 135

Query: 124 ELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 183
           E+P+ETTL C RGS+SALE L T KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPL
Sbjct: 136 EIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPL 195

Query: 184 DYLSCPIVCSANPDKL--------LPSSVKGGY-TDGVSVSQTRIEGGAKAVLTSEDLAL 243
           D+LSCPIV +A  + +        +  +V G    + V+V QTRIEGGAKAV T  DL L
Sbjct: 196 DHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVL 255

Query: 244 QHVRVIYARTALFFWFDVEYK 256
           Q VRV+Y++  L+FWFDV+Y+
Sbjct: 256 QRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of MS004265 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 132.1 bits (331), Expect = 6.3e-31
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 4   QEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 63
           + I + K K++    S +S  +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 16  ERIVESKMKKRMKPYSLTS--LNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHP 75

Query: 64  RLWLRVERSIKDLSESGVFPTIEAAVAAAR 94
           RLWLRV+R +KDLS+ GVF  IE+AV+AAR
Sbjct: 76  RLWLRVDRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of MS004265 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139176.1	3.4e-143	99.61	F-box protein SKIP5 [Momordica charantia]	[more]
XP_004142419.1	1.2e-132	93.36	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_022966937.1	3.5e-132	92.55	F-box protein SKIP5 isoform X1 [Cucurbita maxima]	[more]
XP_008446937.1	1.3e-131	92.58	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_038889674.1	6.6e-131	92.97	F-box protein SKIP5 [Benincasa hispida]	[more]

BLAST of MS004265 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	4.3e-93	65.90	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of MS004265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBW5	1.6e-143	99.61	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A0A0KRR7	5.8e-133	93.36	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A6J1HPC3	1.7e-132	92.55	F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ...	[more]
A0A5A7SZI1	6.4e-132	92.58	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	6.4e-132	92.58	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]

BLAST of MS004265 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	3.1e-94	65.90	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	6.3e-31	70.00	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 28..69 e-value: 0.0065 score: 25.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 32..69 e-value: 6.6E-9 score: 35.5
None	No IPR available	GENE3D	1.20.1280.50		coord: 26..66 e-value: 2.4E-12 score: 48.5
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 19..72
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 73..255
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 19..72
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 73..255
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 15..77
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 79..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004265.1	MS004265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding