MS004219 (gene) Bitter gourd (TR) v1

Overview


Name	MS004219
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNL-type domain-containing protein
Location	scaffold92: 904180 .. 904683 (-)
RNA-Seq Expression	MS004219
Synteny	MS004219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

mRNA sequence

ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

Coding sequence (CDS)

ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

Protein sequence

MAVCTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNNDSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS

Homology

[Close]

BLAST of MS004219 vs. NCBI nr
Match: XP_022138898.1 (uncharacterized protein LOC111009963 [Momordica charantia])

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 4   CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNN 63
           CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKN+
Sbjct: 22  CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKND 81

Query: 64  DSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL 123
           DSAAVKYSV+SNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL
Sbjct: 82  DSAAVKYSVISNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL 141

Query: 124 IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS
Sbjct: 142 IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 186

[Close]

BLAST of MS004219 vs. NCBI nr
Match: XP_038891386.1 (DNL-type zinc finger protein isoform X2 [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 143/168 (85.12%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MAVCTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQE 60
           MA  TC IHPFANS FLTGHRF RRGNQT+A PA+AEDSKDNEDNKL P+SD  DPL + 
Sbjct: 1   MAESTCGIHPFANSWFLTGHRFSRRGNQTVATPAIAEDSKDNEDNKLTPISDLGDPLHEN 60

Query: 61  KNNDSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNN 120
           K +D++AVKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGC+N
Sbjct: 61  K-DDTSAVKYSVLSNLKSSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSN 120

Query: 121 LHLIADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           LHLIADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGKKS
Sbjct: 121 LHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKKS 167

[Close]

BLAST of MS004219 vs. NCBI nr
Match: XP_038891384.1 (DNL-type zinc finger protein isoform X1 [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 141/164 (85.98%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 5   TCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNND 64
           TC IHPFANS FLTGHRF RRGNQT+A PA+AEDSKDNEDNKL P+SD  DPL + K +D
Sbjct: 26  TCGIHPFANSWFLTGHRFSRRGNQTVATPAIAEDSKDNEDNKLTPISDLGDPLHENK-DD 85

Query: 65  SAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLI 124
           ++AVKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGC+NLHLI
Sbjct: 86  TSAVKYSVLSNLKSSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSNLHLI 145

Query: 125 ADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           ADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGKKS
Sbjct: 146 ADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKKS 188

[Close]

BLAST of MS004219 vs. NCBI nr
Match: XP_004142433.2 (uncharacterized protein LOC101207740 [Cucumis sativus] >KGN52257.1 hypothetical protein Csa_009137 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 135/164 (82.32%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 5   TCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNND 64
           TC IH FANS FLTGH+F RR N T A PA+AEDSKDNEDNKL+P+SD   PL + K +D
Sbjct: 61  TCPIHSFANSWFLTGHKFTRRENHTEATPAIAEDSKDNEDNKLRPISDLGKPLHENK-DD 120

Query: 65  SAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLI 124
           +++VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGCNNLHLI
Sbjct: 121 TSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNLHLI 180

Query: 125 ADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           ADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGK S
Sbjct: 181 ADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKTS 223

[Close]

BLAST of MS004219 vs. NCBI nr
Match: KAA0034710.1 (DNL-type zinc finger protein [Cucumis melo var. makuwa] >TYK09263.1 DNL-type zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-67
Identity = 130/161 (80.75%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 8   IHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNNDSAA 67
           +HPFANS FLTG+RFLRR   T A PA+AE+SKDNED KL+P+S+  DPL + K +D+++
Sbjct: 25  VHPFANSWFLTGYRFLRRETHTEATPAIAEESKDNEDTKLRPISELGDPLHENK-DDTSS 84

Query: 68  VKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADH 127
           VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGC+NLHLIADH
Sbjct: 85  VKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSNLHLIADH 144

Query: 128 LGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           LGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGK S
Sbjct: 145 LGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKTS 184

[Close]

BLAST of MS004219 vs. ExPASy Swiss-Prot
Match: Q0IH40 (DNL-type zinc finger protein OS=Xenopus laevis OX=8355 GN=dnlz PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 76  LKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGE-- 135
           L  +P     +I+TCKVC TRS KT+ + +Y KGVV+ RC GC N H+IAD+LGWF +  
Sbjct: 74  LPAAPSSHYRLIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLE 133

Query: 136 -PGSIEDFLAARGEEVRK 151
              +IE+ LAA+GE+V++
Sbjct: 134 GRRNIEEILAAKGEQVQR 151

[Close]

BLAST of MS004219 vs. ExPASy Swiss-Prot
Match: Q9D113 (DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 86  MIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 145
           +++TCKVC TRS K + + +Y +GVV+  C GC N H+IAD+L WF +     +IE+ LA
Sbjct: 75  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILA 134

Query: 146 ARGEEVRKGSVD-SLSLTLD 162
           ARGEEVR+ S D +L L L+
Sbjct: 135 ARGEEVRRVSGDGALELILE 154

[Close]

BLAST of MS004219 vs. ExPASy Swiss-Prot
Match: A1L1P7 (DNL-type zinc finger protein OS=Danio rerio OX=7955 GN=dnlz PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 86  MIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 145
           +++TCKVC TRS+K + + +Y KGVV+  C GC N H+IAD+L WF +     +IE+ LA
Sbjct: 83  LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLEGKRNIEEILA 142

Query: 146 ARGEEVRK 151
           A+GE VR+
Sbjct: 143 AKGESVRR 150

[Close]

BLAST of MS004219 vs. ExPASy Swiss-Prot
Match: Q5SXM8 (DNL-type zinc finger protein OS=Homo sapiens OX=9606 GN=DNLZ PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 86  MIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 145
           +++TCKVC TRS K + + +Y +GVV+  C GC N H+IAD+LGWF +     +IE+ L 
Sbjct: 71  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILT 130

Query: 146 ARGEEV-RKGSVDSLSLTLD 162
           ARGE+V R     +L L L+
Sbjct: 131 ARGEQVHRVAGEGALELVLE 150

[Close]

BLAST of MS004219 vs. ExPASy Swiss-Prot
Match: Q09759 (Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC24H6.02c PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 59  QEKNNDSAAVKYSVLSNL-KMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGG 118
           Q    D A+   SV S+  ++ P+    + FTC VC TRS     + +Y  G V+ +C  
Sbjct: 50  QSDAKDLASGVPSVKSDADQLQPKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPK 109

Query: 119 CNNLHLIADHLGWFGEPG-SIEDFLAARGEEVRKG 152
           C N HL+ADHL  F E   +IED LA +GE  +KG
Sbjct: 110 CKNRHLMADHLKIFSEERVTIEDILAKKGETFKKG 144

[Close]

BLAST of MS004219 vs. ExPASy TrEMBL
Match: A0A6J1CEE4 (uncharacterized protein LOC111009963 OS=Momordica charantia OX=3673 GN=LOC111009963 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.4e-88
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 4   CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNN 63
           CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKN+
Sbjct: 22  CTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKND 81

Query: 64  DSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL 123
           DSAAVKYSV+SNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL
Sbjct: 82  DSAAVKYSVISNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHL 141

Query: 124 IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS
Sbjct: 142 IADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 186

[Close]

BLAST of MS004219 vs. ExPASy TrEMBL
Match: A0A0A0KUY3 (DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622720 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.8e-70
Identity = 135/164 (82.32%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 5   TCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNND 64
           TC IH FANS FLTGH+F RR N T A PA+AEDSKDNEDNKL+P+SD   PL + K +D
Sbjct: 61  TCPIHSFANSWFLTGHKFTRRENHTEATPAIAEDSKDNEDNKLRPISDLGKPLHENK-DD 120

Query: 65  SAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLI 124
           +++VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGCNNLHLI
Sbjct: 121 TSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNLHLI 180

Query: 125 ADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           ADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGK S
Sbjct: 181 ADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKTS 223

[Close]

BLAST of MS004219 vs. ExPASy TrEMBL
Match: A0A1S4DW08 (DNL-type zinc finger protein OS=Cucumis melo OX=3656 GN=LOC103489455 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.8e-67
Identity = 130/161 (80.75%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 8   IHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNNDSAA 67
           +HPFANS FLTG+RFLRR   T A PA+AE+SKDNED KL+P+S+  DPL + K +D+++
Sbjct: 27  VHPFANSWFLTGYRFLRRETHTEATPAIAEESKDNEDTKLRPISELGDPLHENK-DDTSS 86

Query: 68  VKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADH 127
           VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGC+NLHLIADH
Sbjct: 87  VKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSNLHLIADH 146

Query: 128 LGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           LGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGK S
Sbjct: 147 LGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKTS 186

[Close]

BLAST of MS004219 vs. ExPASy TrEMBL
Match: A0A5D3CBP4 (DNL-type zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002580 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.8e-67
Identity = 130/161 (80.75%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 8   IHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNNDSAA 67
           +HPFANS FLTG+RFLRR   T A PA+AE+SKDNED KL+P+S+  DPL + K +D+++
Sbjct: 25  VHPFANSWFLTGYRFLRRETHTEATPAIAEESKDNEDTKLRPISELGDPLHENK-DDTSS 84

Query: 68  VKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADH 127
           VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGC+NLHLIADH
Sbjct: 85  VKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSNLHLIADH 144

Query: 128 LGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           LGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLAGK S
Sbjct: 145 LGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKTS 184

[Close]

BLAST of MS004219 vs. ExPASy TrEMBL
Match: A0A6J1GYW7 (uncharacterized protein C24H6.02c OS=Cucurbita moschata OX=3662 GN=LOC111458755 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.8e-65
Identity = 127/164 (77.44%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 5   TCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNND 64
           TCQIHPFANS FLTG RF  RGNQ++AN ++AEDSKDNE N +            E  +D
Sbjct: 24  TCQIHPFANSWFLTGQRFWIRGNQSLANSSIAEDSKDNERNSV-----------HENKDD 83

Query: 65  SAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLI 124
            +AVKYSV+SNLK SPRHDLAMIFTCKVCETRSIKTVCR SYEKGVVVARCGGCNNLHLI
Sbjct: 84  GSAVKYSVMSNLKSSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNLHLI 143

Query: 125 ADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS 169
           ADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSL+L+DLAGK S
Sbjct: 144 ADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLSLEDLAGKNS 176

[Close]

BLAST of MS004219 vs. TAIR 10
Match: AT3G54826.1 (Zim17-type zinc finger protein )

HSP 1 Score: 148.7 bits (374), Expect = 4.3e-36
Identity = 81/157 (51.59%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 12  ANSRFLTGHRFLRRGNQTIANPAVA-EDSKDNEDNKLQPVSDSIDPLDQEKNNDSAAVKY 71
           +NS F   H + R   + ++    A E S  N  N     ++S         ++   VKY
Sbjct: 65  SNSLFSRSHVYGRLFQRQLSVIREANEASVTNVCNSSNSATESAKVPSPATPSEEMMVKY 124

Query: 72  SVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGW 131
              S LK++PRHD  M+FTCKVC+TRS+K   R SYE GVVV RCGGC+NLHLIAD  GW
Sbjct: 125 K--SQLKINPRHDFMMVFTCKVCDTRSMKMASRESYENGVVVVRCGGCDNLHLIADRRGW 184

Query: 132 FGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKK 168
           FGEPGS+EDFLA++GEE +KGS+DSL+LT +DLAG K
Sbjct: 185 FGEPGSVEDFLASQGEEFKKGSMDSLNLTPEDLAGGK 219

[Close]

BLAST of MS004219 vs. TAIR 10
Match: AT1G68730.1 (Zim17-type zinc finger protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-07
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 43  EDNKLQPVSDSIDPLDQEKNNDSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVC 102
           +D+KL P          E++NDSA V      ++K+ PR  L + FTC  C  R+ + + 
Sbjct: 78  DDSKLNP---------DEESNDSAEV---ASIDIKL-PRRSLQVEFTCNSCGERTKRLIN 137

Query: 103 RSSYEKGVVVARCGGCNNLHLIADHLG 130
           R +YEKG+V  +C GC   H + D+LG
Sbjct: 138 RHAYEKGLVFVQCAGCLKHHKLVDNLG 151

The following BLAST results are available for this feature:

BLAST of MS004219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138898.1	1.3e-87	98.79	uncharacterized protein LOC111009963 [Momordica charantia]	[more]
XP_038891386.1	1.3e-74	85.12	DNL-type zinc finger protein isoform X2 [Benincasa hispida]	[more]
XP_038891384.1	6.3e-74	85.98	DNL-type zinc finger protein isoform X1 [Benincasa hispida]	[more]
XP_004142433.2	1.6e-69	82.32	uncharacterized protein LOC101207740 [Cucumis sativus] >KGN52257.1 hypothetical ...	[more]
KAA0034710.1	5.7e-67	80.75	DNL-type zinc finger protein [Cucumis melo var. makuwa] >TYK09263.1 DNL-type zin...	[more]

BLAST of MS004219 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IH40	2.8e-16	50.00	DNL-type zinc finger protein OS=Xenopus laevis OX=8355 GN=dnlz PE=2 SV=1	[more]
Q9D113	9.0e-15	50.00	DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1	[more]
A1L1P7	7.7e-14	50.00	DNL-type zinc finger protein OS=Danio rerio OX=7955 GN=dnlz PE=2 SV=1	[more]
Q5SXM8	1.7e-13	46.25	DNL-type zinc finger protein OS=Homo sapiens OX=9606 GN=DNLZ PE=1 SV=1	[more]
Q09759	6.7e-10	40.00	Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of MS004219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEE4	6.4e-88	98.79	uncharacterized protein LOC111009963 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0KUY3	7.8e-70	82.32	DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622720 PE...	[more]
A0A1S4DW08	2.8e-67	80.75	DNL-type zinc finger protein OS=Cucumis melo OX=3656 GN=LOC103489455 PE=4 SV=1	[more]
A0A5D3CBP4	2.8e-67	80.75	DNL-type zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1GYW7	5.8e-65	77.44	uncharacterized protein C24H6.02c OS=Cucurbita moschata OX=3662 GN=LOC111458755 ...	[more]

BLAST of MS004219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54826.1	4.3e-36	51.59	Zim17-type zinc finger protein	[more]
AT1G68730.1	2.4e-07	36.78	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 86..146 e-value: 2.9E-25 score: 88.0
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 79..168 score: 17.584902
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..60
None	No IPR available	PANTHER	PTHR20922:SF13	DNL-TYPE ZINC FINGER PROTEIN	coord: 20..167
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 20..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004219.1	MS004219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding