MS004169 (gene) Bitter gourd (TR) v1

Overview
NameMS004169
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycosyltransferase
Locationscaffold92: 482075 .. 482313 (+)
RNA-Seq ExpressionMS004169
SyntenyMS004169
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAGTTGGATCAGCCTTATCATGCGAGAGTGGCGGTGGCGGCGGGCGTCGGCATCGAGGCGCTGAGGGAAGCGTTGAGAGAGAAGGGGTGGCGAAGGCAATTAAAGAGGTGGTGTTTGGGAAAACAGGGGAGAATTTGAATGGAAAAGCAAGAGAAATTTGTGAGGTTCTGAAAGCCAAAAAAAGTGAGACTATAAAAGAATGTGTGAACCAACTTAGCCAACTTTGTGGACCAGTT

mRNA sequence

CAACAGTTGGATCAGCCTTATCATGCGAGAGTGGCGGTGGCGGCGGGCGTCGGCATCGAGGCGGAGGGAAGCGTTGAGAGAGAAGGGGTGGCGAAGGCAATTAAAGAGGTGGTGTTTGGGAAAACAGGGGAGAATTTGAATGGAAAAGCAAGAGAAATTTGTGAGGTTCTGAAAGCCAAAAAAAGTGAGACTATAAAAGAATGTGTGAACCAACTTAGCCAACTTTGTGGACCAGTT

Coding sequence (CDS)

CAACAGTTGGATCAGCCTTATCATGCGAGAGTGGCGGTGGCGGCGGGCGTCGGCATCGAGGCGGAGGGAAGCGTTGAGAGAGAAGGGGTGGCGAAGGCAATTAAAGAGGTGGTGTTTGGGAAAACAGGGGAGAATTTGAATGGAAAAGCAAGAGAAATTTGTGAGGTTCTGAAAGCCAAAAAAAGTGAGACTATAAAAGAATGTGTGAACCAACTTAGCCAACTTTGTGGACCAGTT

Protein sequence

QQLDQPYHARVAVAAGVGIEAEGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVLKAKKSETIKECVNQLSQLCGPV
Homology
BLAST of MS004169 vs. NCBI nr
Match: XP_022945623.1 (beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP+H +VAVAAGV +EA    +G+V+REGVAKAIKEV+F K GE L+GKA+EICE L
Sbjct: 364 QLDQPFHGKVAVAAGVAVEAARGVDGAVQREGVAKAIKEVLFEKKGEELSGKAKEICESL 423

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I  CV ++S++
Sbjct: 424 KVKDGKNIDTCVVEISRI 441

BLAST of MS004169 vs. NCBI nr
Match: KAG7012939.1 (Beta-D-glucosyl crocetin beta-1,6-glucosyltransferase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP+H +VAVAAGV +EA    +G+V+REGVAKAIKEV+F K GE L+GKA+EICE L
Sbjct: 236 QLDQPFHGKVAVAAGVAVEAARGVDGAVQREGVAKAIKEVLFEKKGEKLSGKAKEICESL 295

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I  CV ++S++
Sbjct: 296 KVKDGKNIDTCVVEISRI 313

BLAST of MS004169 vs. NCBI nr
Match: KAG6573873.1 (UDP-glucosyltransferase 29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP+H +VAVAAGV +EA    +G+V+REGVAKAIKEV+F K GE L+GKA+EICE L
Sbjct: 178 QLDQPFHGKVAVAAGVAVEAARGVDGAVQREGVAKAIKEVLFEKKGEKLSGKAKEICESL 237

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I  CV ++S++
Sbjct: 238 KVKDGKNIDTCVVEISRI 255

BLAST of MS004169 vs. NCBI nr
Match: XP_023542460.1 (beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP+H +VAVAAGV +EA    +G+V REGVAKAIKEV+F K GE L+GKA+EICE L
Sbjct: 364 QLDQPFHGKVAVAAGVAVEAARGVDGAVTREGVAKAIKEVLFEKKGEELSGKAKEICESL 423

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I  CV  +S++
Sbjct: 424 KVKDGKNIDTCVVAISRI 441

BLAST of MS004169 vs. NCBI nr
Match: XP_022968565.1 (beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP H +VAVAAGV +EA    +G++EREGVAKAIKEV+F K GE L+GKA+EI E L
Sbjct: 153 QLDQPCHGKVAVAAGVAVEAARGVDGAIEREGVAKAIKEVLFEKKGEELSGKAKEISESL 212

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I+ CV ++S++
Sbjct: 213 KVKDGKNIEACVVEISRI 230

BLAST of MS004169 vs. ExPASy Swiss-Prot
Match: A0A0A6ZFY4 (UDP-glucosyltransferase 29 OS=Panax ginseng OX=4054 GN=UGT29 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-08
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 1   QQLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEV 60
           + LDQP + ++A   GVG+E      G  +REG+A+ I++VV  K+GE +  KARE+ E 
Sbjct: 356 RHLDQPLNGKLAAEVGVGMEVVRDENGKYKREGIAEVIRKVVVEKSGEVIRRKARELSEK 415

Query: 61  LKAKKSETIKECVNQLSQLC 77
           +K K  + I   + +L Q+C
Sbjct: 416 MKEKGEQEIDRALEELVQIC 435

BLAST of MS004169 vs. ExPASy Swiss-Prot
Match: Q5NTH0 (Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis OX=41492 GN=UGAT PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIE----AEGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           Q DQPY+AR+    G GIE     EG ++RE +A  +++VV   +GE++  KA+E+ E++
Sbjct: 355 QFDQPYNARLMETVGAGIEVGRDGEGRLKREEIAAVVRKVVVEDSGESIREKAKELGEIM 414

Query: 62  KAK-KSETIKECVNQLSQLC 77
           K   ++E     +  L +LC
Sbjct: 415 KKNMEAEVDGIVIENLVKLC 434

BLAST of MS004169 vs. ExPASy Swiss-Prot
Match: F8WKW8 (Beta-D-glucosyl crocetin beta-1,6-glucosyltransferase OS=Gardenia jasminoides OX=114476 GN=UGT94E5 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 3   LDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVLK 62
           LDQP +AR+ V  G G+E      G  +R+ +A+AIK+ +  KTGEN   K  ++   ++
Sbjct: 359 LDQPLNARLVVEIGAGMEVVRDETGKFDRKEIARAIKDAMVEKTGENTRAKMLDVKGRVE 418

Query: 63  AKKSETIKECVNQLSQL 76
            K+ + + E    L+QL
Sbjct: 419 LKEKQELDEVAELLTQL 435

BLAST of MS004169 vs. ExPASy TrEMBL
Match: A0A6J1G1E9 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111449808 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP+H +VAVAAGV +EA    +G+V+REGVAKAIKEV+F K GE L+GKA+EICE L
Sbjct: 364 QLDQPFHGKVAVAAGVAVEAARGVDGAVQREGVAKAIKEVLFEKKGEELSGKAKEICESL 423

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I  CV ++S++
Sbjct: 424 KVKDGKNIDTCVVEISRI 441

BLAST of MS004169 vs. ExPASy TrEMBL
Match: A0A6J1HXJ1 (beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like OS=Cucurbita maxima OX=3661 GN=LOC111467753 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP H +VAVAAGV +EA    +G++EREGVAKAIKEV+F K GE L+GKA+EI E L
Sbjct: 153 QLDQPCHGKVAVAAGVAVEAARGVDGAIEREGVAKAIKEVLFEKKGEELSGKAKEISESL 212

Query: 62  KAKKSETIKECVNQLSQL 76
           K K  + I+ CV ++S++
Sbjct: 213 KVKDGKNIEACVVEISRI 230

BLAST of MS004169 vs. ExPASy TrEMBL
Match: A0A6J1JEZ0 (Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484427 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP HA+VA  AGV +E     EG+V++EGVAKAIKEVVF K+GE L GKAREI E L
Sbjct: 353 QLDQPCHAKVANLAGVCVETERDDEGNVKKEGVAKAIKEVVFEKSGEALRGKAREIGEAL 412

Query: 62  KAKKSETIKECVNQLSQLCGPV 80
           + ++   + E V++  +L  P+
Sbjct: 413 RKREEGMVDEVVSEFCRLLEPI 434

BLAST of MS004169 vs. ExPASy TrEMBL
Match: A0A6J1H033 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111458713 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 2   QLDQPYHARVAVAAGVGIEA----EGSVEREGVAKAIKEVVFGKTGENLNGKAREICEVL 61
           QLDQP HA+VA  AGV +EA    EG+V+REGVAKAIKEVV  ++GE L GKAREI E L
Sbjct: 364 QLDQPCHAKVANLAGVCVEAERDDEGNVKREGVAKAIKEVVSEESGEALRGKAREIGEAL 423

Query: 62  KAKKSETIKECVNQLSQLCGP 79
           + ++   + E V +   L  P
Sbjct: 424 RKREEGIVDEVVREFCSLSQP 444

BLAST of MS004169 vs. ExPASy TrEMBL
Match: A0A6P6UKV0 (Glycosyltransferase OS=Coffea arabica OX=13443 GN=LOC113711903 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 4   DQPYHARVAVAAGVGIE----AEGSVEREGVAKAIKEVVFGKT--GENLNGKAREICEVL 63
           DQP+HAR+AV  GVGIE     +G ++RE VAK IKEVV  KT  GE++  KA+E+   L
Sbjct: 390 DQPHHARLAVEVGVGIEILRDEDGRIKRENVAKVIKEVVVEKTELGESVKQKAKELSHNL 449

Query: 64  KAKKSETIKECVNQLSQLCG 78
           + +  E ++E V +L  LCG
Sbjct: 450 REEGEEELQEAVEELRNLCG 469

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945623.15.3e-1560.26beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita moschata][more]
KAG7012939.15.3e-1560.26Beta-D-glucosyl crocetin beta-1,6-glucosyltransferase, partial [Cucurbita argyro... [more]
KAG6573873.15.3e-1560.26UDP-glucosyltransferase 29, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023542460.12.7e-1460.26beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita pepo subsp... [more]
XP_022968565.11.0e-1358.97beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A0A6ZFY43.9e-0838.75UDP-glucosyltransferase 29 OS=Panax ginseng OX=4054 GN=UGT29 PE=1 SV=1[more]
Q5NTH01.4e-0536.25Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis OX=41492 G... [more]
F8WKW81.2e-0435.06Beta-D-glucosyl crocetin beta-1,6-glucosyltransferase OS=Gardenia jasminoides OX... [more]
Match NameE-valueIdentityDescription
A0A6J1G1E92.6e-1560.26Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111449808 PE=3 SV=1[more]
A0A6J1HXJ14.9e-1458.97beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like OS=Cucurbita maxima O... [more]
A0A6J1JEZ01.7e-1153.66Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484427 PE=3 SV=1[more]
A0A6J1H0332.5e-1054.32Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111458713 PE=3 SV=1[more]
A0A6P6UKV02.3e-0848.75Glycosyltransferase OS=Coffea arabica OX=13443 GN=LOC113711903 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2000Glycogen Phosphorylase B;coord: 2..58
e-value: 7.2E-7
score: 31.0
NoneNo IPR availableSUPERFAMILY53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004169.1MS004169.1mRNA