MS004149 (gene) Bitter gourd (TR) v1

Overview


Name	MS004149
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein GRP1A-like
Location	scaffold92: 342373 .. 342672 (-)
RNA-Seq Expression	MS004149
Synteny	MS004149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAGTCTAATTACCATCAGAAAAGTTACAAAGAAAAATATGGCAAGGATTGGGCTACTAACCAGATTGGCACGAGATACAGTTTAAGCACCGTATCTCATGGTGTTGGTCGTGGAAGCGCAGCCGGCGGAGATAATGGCGGTGGCAGTAGACCTCATTCAGGAGGAGGTTCCGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCTGAAGCACGTCGCCGCCAGGGTCGGCCGCACAATGCAGGAAATCGCTGTGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATT

mRNA sequence

GCAGAGTCTAATTACCATCAGAAAAGTTACAAAGAAAAATATGGCAAGGATTGGGCTACTAACCAGATTGGCACGAGATACAGTTTAAGCACCGTATCTCATGGTGTTGGTCGTGGAAGCGCAGCCGGCGGAGATAATGGCGGTGGCAGTAGACCTCATTCAGGAGGAGGTTCCGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCTGAAGCACGTCGCCGCCAGGGTCGGCCGCACAATGCAGGAAATCGCTGTGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATT

Coding sequence (CDS)

GCAGAGTCTAATTACCATCAGAAAAGTTACAAAGAAAAATATGGCAAGGATTGGGCTACTAACCAGATTGGCACGAGATACAGTTTAAGCACCGTATCTCATGGTGTTGGTCGTGGAAGCGCAGCCGGCGGAGATAATGGCGGTGGCAGTAGACCTCATTCAGGAGGAGGTTCCGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCTGAAGCACGTCGCCGCCAGGGTCGGCCGCACAATGCAGGAAATCGCTGTGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATT

Protein sequence

AESNYHQKSYKEKYGKDWATNQIGTRYSLSTVSHGVGRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI

Homology

[Close]

BLAST of MS004149 vs. NCBI nr
Match: XP_038892711.1 (uncharacterized protein LOC120081693 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 5.3e-28
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS--AAGGDNGGGSRPHSGGG 61
           ESNY QK+Y EK  KD  TNQI  RYS +  TVS+G+G+GS  A GG+NGGGSRPH+GGG
Sbjct: 33  ESNYQQKTYTEKRSKDGITNQIARRYSATEITVSNGIGQGSAVAGGGENGGGSRPHNGGG 92

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGRPHNAGNR ENN GLLVAAVLAAI
Sbjct: 93  TAVIPVYAAGSAQAHHRQGRPHNAGNRHENNRGLLVAAVLAAI 135

[Close]

BLAST of MS004149 vs. NCBI nr
Match: XP_008446752.1 (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo] >KAA0034650.1 uncharacterized protein E6C27_scaffold65G006690 [Cucumis melo var. makuwa] >TYK09201.1 uncharacterized protein E5676_scaffold475G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-25
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHS 61
           ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 62  GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVAAVLAAI
Sbjct: 94  GGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAI 139

[Close]

BLAST of MS004149 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG7032020.1 hypothetical protein SDJN02_06062 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGG 61
           ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VLAAI
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 135

[Close]

BLAST of MS004149 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGG 61
           ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VLAAI
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 135

[Close]

BLAST of MS004149 vs. NCBI nr
Match: KAG6601227.1 (hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGG 61
           ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG
Sbjct: 24  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 83

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VLAAI
Sbjct: 84  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 126

[Close]

BLAST of MS004149 vs. ExPASy TrEMBL
Match: A0A5A7SUI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001940 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHS 61
           ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 62  GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVAAVLAAI
Sbjct: 94  GGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAI 139

[Close]

BLAST of MS004149 vs. ExPASy TrEMBL
Match: A0A1S3BFU8 (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHS 61
           ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 62  GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVAAVLAAI
Sbjct: 94  GGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAI 139

[Close]

BLAST of MS004149 vs. ExPASy TrEMBL
Match: A0A6J1GZ71 (glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC111458855 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGG 61
           ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VLAAI
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 135

[Close]

BLAST of MS004149 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGG 61
           E NYHQK+  EK+G+D  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG
Sbjct: 33  EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 62  SAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           +AVIPVYAAGSA+A  RQGRP NAGN  ENNMGLLVA+VLAAI
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAI 135

[Close]

BLAST of MS004149 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 2   ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS------------AAGGDNG 61
           ESNY QK+Y +K+GK   TNQI  RYS S  TVS+ + RGS            AAGG   
Sbjct: 35  ESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGEN 94

Query: 62  GGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI 101
           GGSRP +GGG+AVIPVYAAGSA+A  RQGR HNAGN  ENNMGLLVAAVLAAI
Sbjct: 95  GGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAI 147

The following BLAST results are available for this feature:

BLAST of MS004149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892711.1	5.3e-28	73.79	uncharacterized protein LOC120081693 [Benincasa hispida]	[more]
XP_008446752.1	7.2e-25	68.87	PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo] >KAA0034650.1 unc...	[more]
XP_023517064.1	2.3e-23	68.93	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG703...	[more]
XP_022957462.1	2.3e-23	68.93	glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]	[more]
KAG6601227.1	2.3e-23	68.93	hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS004149 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUI0	3.5e-25	68.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFU8	3.5e-25	68.87	uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=...	[more]
A0A6J1GZ71	1.1e-23	68.93	glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB47	1.5e-23	67.96	uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159...	[more]
A0A0A0KUR6	1.2e-22	63.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]

BLAST of MS004149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004149.1	MS004149.1	mRNA